BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G22740.2 Length=2588 Score E Sequences producing significant alignments: (Bits) Value Ahg899566 jgi|Araly1|899566|Al_scaffold_0004_216 2748 0.0 Ahg930701 jgi|Araly1|930701|scaffold_303158.1 187 3e-46 Ahg949296 jgi|Araly1|949296|scaffold_801183.1 176 7e-43 Ahg932867 jgi|Araly1|932867|scaffold_400855.1 176 7e-43 > Ahg899566 jgi|Araly1|899566|Al_scaffold_0004_216 Length=2427 Score = 2748 bits (1488), Expect = 0.0 Identities = 2150/2454 (88%), Gaps = 108/2454 (4%) Strand=Plus/Plus Query 126 ATGGAAATGGGAGTTATGGAGAATTTGATGGTACATACGGAGATATCAAAGGTTAAGTC- 184 ||||||||||| ||||||||||||| |||||| |||||||||| ||||||||||||||| Sbjct 1 ATGGAAATGGGTGTTATGGAGAATTCGATGGTGCATACGGAGACATCAAAGGTTAAGTCG 60 Query 185 TCAGAGCAATGGTGA-G-----GTGGAGAAACGAGGAGTGTCAGTTTTGGAGAATGGTGG 238 | ||| |||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 61 T-TGAGTAATGGTGAGGTTTTAGTGGAGAAACGAGGAGTGTCAGTTTTGGAGAATGGTGG 119 Query 239 TGTTTGCAAGCTTGATCGAATGA-GTGGGCTTAAGTTTAAGCGTCGGAAGGTTTTTGCTG 297 ||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||| Sbjct 120 TGTTTGCAAGCTTGATCGAATGACG-GGGCTTAAGTTTAAGCGCCGGAAGGTTTTTGCTG 178 Query 298 TGAGGGACTTTCCACC-GGGT----------TGTGGTTC-G--AGAG-CAATGGAAGTGA 342 ||||||| ||||| || |||| ||||| | | | | | |||||||||| Sbjct 179 TGAGGGATTTTCCGCCGGGGTGCGGGACCCGTGTGGAGCGGTTTGGGTCGATGGAAGTGA 238 Query 343 AGATTGCTTGTGAGAATGGGAATGTTGTTGAAGATGTTAAGGTTGTTGAGTCTTTGGTTA 402 ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct 239 AGAGTGCTTGTGAGAATGGGAATGTTGCTGAAGATGTTAAGGTTGTTGAGTCTTTAGTTA 298 Query 403 AAGAGGAG-GAGA--GT--T-TGG--G--GCA-G-AGAG-A-T-GCCTCTGAAAACGTGA 447 |||||||| |||| || | ||| | || | ||| | | | | || || | || Sbjct 299 AAGAGGAGAGAGATGGTGGTGTGGATGTATCAGGTGGAGAACTGGAAGCGGAGAATGGGA 358 Query 448 GTGATATCAGAATGGCTGAGCCGGTGGAGGTTCAGCC-TCTGAGAATTTGTTTGCCAGGA 506 ||||| | || ||||||||| |||||||||||||||| | |||| ||||||||||||| | Sbjct 359 GTGATGTTAGTATGGCTGAGGCGGTGGAGGTTCAGCCGT-TGAGCATTTGTTTGCCAGAA 417 Query 507 GGTGATGTGGTAAGAGACTTGTCTGTTACCG-C-G-GGA-G--AC-GAGT-GTTCAAACA 558 || ||||||| ||||| ||| || || | | | ||| | | | || | | ||| Sbjct 418 GGGGATGTGG--AGAGAAATGT-TG-AACAGACTGTGGAGGTTGCTGGGTCGATGGGACA 473 Query 559 GTGAACAG--ATTGTGG---CGGGTTCTGGTGTTAGCAGCAGCAGCGGAACTGAAAACAT 613 | | | ||| || |||||||||||| |||||||||| | |||||||||||| Sbjct 474 GAGCTTGGTTCTTGAGGATTCGGGTTCTGGTGCTAGCAGCAGCGGAACAACTGAAAACAT 533 Query 614 TGTCAGGGATATCGTTGTTTACGCAGATGAGAGCAGTCTAGGAATGGATAATTTGGATCA 673 || |||||| |||||||||| ||||||||||||||||| ||||| ||| |||||||| | Sbjct 534 GGTGAGGGATGTCGTTGTTTATGCAGATGAGAGCAGTCTGGGAATAGATGATTTGGATTA 593 Query 674 AACTCAGCCGCTAGAAATTGAAATGTCAGATGTTGCAGTTGCAAAACCGAGGCTTGTTGC 733 ||| ||||| | |||||||| |||||||||||| | |||||||||||||| |||||||| Sbjct 594 TACTGAGCCGTTGGAAATTGAGATGTCAGATGTTTCTGTTGCAAAACCGAGTCTTGTTGC 653 Query 734 GGGTAGAAAG-AAGGCAAAGAAAGGAATTGCATGTCATTCATCCTTGAAGGTT------- 785 |||||| ||| |||||||||||||||||||||| |||||||||||||||| || Sbjct 654 GGGTAG-AAGAAAGGCAAAGAAAGGAATTGCATTTCATTCATCCTTGAAGCTTACCAAAA 712 Query 786 -G-TTAGCCGAGAGTTTGGTGAAGGATCTAGGAAGAAGAAGAGTAAGAAG-AATTTATAT 842 | | |||||||| ||||||||||||||| |||| ||| |||||| || ||| ||||| Sbjct 713 AGAACAACCGAGAGTATGGTGAAGGATCTAGTAAGAGGAACAGTAAG-AGCAATATATAT 771 Query 843 TGGCGTGATAGGGAAAGTCTGGATTCTCCTGAGCA-GCTTCGGATACT-AGGTG-TT-GG 898 |||| | |||||||||||||||||| |||| | || | | || || || | || || Sbjct 772 TGGCTTTATAGGGAAAGTCTGGATTTTCCTCATCAGGAAAC--AT-CTCGGGAGCTTCGG 828 Query 899 -GACAAGCA-G-CGGTTCAAGCAG-CG-G-TGATAGTAGTCGGAACAAAGTAAAGGAAAC 952 || || | | ||||||||||| | | |||||||| |||||||||||| |||||||| Sbjct 829 ATACTAG-ATGTTGGTTCAAGCAGTGGTGATGATAGTATTCGGAACAAAGTTAAGGAAAC 887 Query 953 TCTACGTCTTTTCCATGGCGTTTGCAGAAA-GATTCTGCAGGAGGATGAAGCAAAGCCTG 1011 ||| ||||||||||||||||| |||| ||| |||| |||||||||||||||||||||||| Sbjct 888 TCTGCGTCTTTTCCATGGCGTGTGCA-AAAGGATTTTGCAGGAGGATGAAGCAAAGCCTG 946 Query 1012 AGGACCAAAGGAGAAAAGGTAAAGGTCTTAGAATAGATTTTGAGGCTTCGACCATTCTCA 1071 ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| Sbjct 947 AGGACCAAAGGAGAAAAGGTAAAGGTCTTAGAATAGATTTTGACGCTTCGAAGATTCTCA 1006 Query 1072 AAAGGAATGGCAAATTTCTCAACTCTGGTGTGCATATTTTGGGAGAAGTGCCTGGGGTTG 1131 |||||||||| |||| |||||| |||||| || ||||||||| | || ||||| |||| Sbjct 1007 AAAGGAATGGGAAATATCTCAATTCTGGTACACAGATTTTGGGACATGTACCTGGAGTTG 1066 Query 1132 AGGTTGGTGATGAGTTCCAATATAGGATGGAGCTGAACATTCTTGGTATACATAAACCAA 1191 |||||||||||||||||| |||||||||||||||||||||||||||| |||| | ||||| Sbjct 1067 AGGTTGGTGATGAGTTCCTATATAGGATGGAGCTGAACATTCTTGGTGTACACAGACCAA 1126 Query 1192 GCCAGGCCGGTATCGATTATATGAAATATGGTAAGGCCAAAGTTGCGACAAGTATTGTAG 1251 |||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 1127 GCCAAGCCGGTATCGATTATATGAAATATGGTAAGGGCATAGTTGCGACAAGTATTGTAG 1186 Query 1252 CCTCTGGAGGGTATGACGACCATCTGGATAACTCGGATGTCTTGACCTACACTGGTCAAG 1311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1187 CCTCTGGAGGGTATGACGACCATCTGGATAACTCGGATGTCTTGACCTACACTGGTCAAG 1246 Query 1312 GCGGAAACGTGATGCAAGTAAAGAAGAAGGG-AGAGGAACTGAAAGAGCCTGAAGACCAA 1370 ||||||| ||||||||||||||||||||||| | |||||||||||||||| ||||||||| Sbjct 1247 GCGGAAATGTGATGCAAGTAAAGAAGAAGGGCA-AGGAACTGAAAGAGCCCGAAGACCAA 1305 Query 1371 AAGCTTATTACC-GGAAACCTCGCGTTAGCAACCAGCATAGAAAAACAA-ACCCCTGTGC 1428 |||||||| | | |||||||||||||||||||||||| || || || || || ||||||| Sbjct 1306 AAGCTTAT-ATCAGGAAACCTCGCGTTAGCAACCAGCTTA-AAGAAGAAGACACCTGTGC 1363 Query 1429 GTGTCATTAGAGGCAAACATAAGTCAACTCATGATAA-ATCAAAAGGTGGAAATTATGTT 1487 ||||||||||||||||||||||||||||| | | || |||| |||||||||||||| Sbjct 1364 GTGTCATTAGAGGCAAACATAAGTCAACTT-TAAAAACATCATCTGGTGGAAATTATGTC 1422 Query 1488 TACGACGGATTATATCTTGTGGAAA-AGTATTGGCAACAAGTCGGATCTCACGGTATGAA 1546 |||||||| || ||||||||| ||| | ||||||||| |||||||||||||||| ||| | Sbjct 1423 TACGACGGTTTGTATCTTGTG-AAAGATTATTGGCAAGAAGTCGGATCTCACGGGATGTA 1481 Query 1547 TGTCTTCAAGTTTCAACTTAGGCGCATACCTGGACAACCTGAACTTTCTTGGGTAGAGGT 1606 ||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||| Sbjct 1482 TGTCTTCAAGTTTCAACTTAGGCGCATACCTGGACAATCTGAACTTTCATGGATAGAGGT 1541 Query 1607 GAAGAAATCTAAGTCAAAATACCGGGAAGGTCTATGCAAGCTTGACATCTCAGAAGGGAA 1666 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1542 GAAGAAATCTAAGTCAAAATACCGGGAAGGTATATGCAAGCTTGACATCTCAGAAGGGAA 1601 Query 1667 AGAGCAGTCACCCATTAGCGCTGTGAACGAAATAGACGACGAGAAACCGCCTTTGTTCAC 1726 ||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 1602 AGAGCTGTCACCCATTAGCGCTGTGAATGAAATAGATGACGAGAAACCGCCTTTGTTCAC 1661 Query 1727 CTACACTGTTAAACTGATTTACCCAGATTGGTGCAGACCAGTTCCTCCAAAGTCATGCTG 1786 |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1662 CTACACAGTTAAAATGATTTACCCAGATTGGTGCAGACCAGTTCCTCCAAAGTCATGCGG 1721 Query 1787 TTGCACCACGCGCTGCACCGAAGCTGAAGCGAGGGTGTGCGCTTGTGTGGAGAAAAACGG 1846 ||||||||| |||||||| ||||| | | || | || ||| | |||||| |||||||| Sbjct 1722 TTGCACCACACGCTGCACAGAAGCC-A-G-GAAG-TGCGCG-T-GTGTGGTGAAAAACGA 1775 Query 1847 TGGAGAGATACCGTACAACTTCGATGGAGCCATTGTTGGTGCAAAACCTACTATCTATGA 1906 ||||||||||||||||||| |||||||||||||||||| || || | | ||||||||| Sbjct 1776 CGGAGAGATACCGTACAACTACGATGGAGCCATTGTTGGGGCTAAGCTTTTTATCTATGA 1835 Query 1907 ATGTGGCCCACTCTGCAAATGCCCTTCTAGTTGCTACCTAAGAGTCACACAGCATGGGAT 1966 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1836 ATGTGGCCCGCTCTGCAAATGCCCTTCTAGTTGCTACCTAAGAGTCACACAGCACGGGAT 1895 Query 1967 CAAGTTACCGCTTGAGATCTTCAAAACCAAGTCAAGAGGTTGGGGAGTGAGAT-GTCTTA 2025 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 1896 CAAGTTACCGCTTGAGATCTTCAAAACCAAGTCAAGAGGTTGGGGAGTGAGATCG-CTTA 1954 Query 2026 AGTCGATCCCTATTGGTAGCTTCATATGTGAATACGTTGGTGAACTTTTAGAGGATAGTG 2085 | ||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||| | Sbjct 1955 AATCGATCCCTATTGGTAGTTTCATATGCGAATACGTTGGTGAACTCTTAGATGATAGCG 2014 Query 2086 AAGCAGAAAGAAGAATCGGGAACGACGAGTATCTCTTTGATATTGGTAACAGATATGATA 2145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2015 AAGCAGAAAGAAGAATCGGGAACGACGAGTATCTCTTTGATATTGGTAACAGATATGATA 2074 Query 2146 ACTCTTTAGCTCAAGGGATGTCAGAGCTAATGCTGGGGACACAGGCAGGCCGATCTATGG 2205 |||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 2075 ACTCTTTAGCGCAAGGGATGTCAGAGCTAATGCCAGGGACACAGGCAGGCCGAGCTATGG 2134 Query 2206 CAGAAGGTGATGAGTCGAGTGGATTCACCATTGATGCAGCAA-GTAAGGGTAATGTTGGG 2264 |||||||||||||| || |||||||||||||||||||||||| | ||||| ||| ||||| Sbjct 2135 CAGAAGGTGATGAGGCGGGTGGATTCACCATTGATGCAGCAAAG-AAGGGGAATATTGGG 2193 Query 2265 AGGTTCATAAACCATAGCTGCTCGCCAAATCTGTACGCCCAAAACGTTTTGTATGATCAT 2324 ||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||| Sbjct 2194 AGGTTCATAAACCATAGCTGCTCGCCAAATCTGTATGCACAAAACGTATTGTATGATCAT 2253 Query 2325 GAAGACTCTAGAATCCCTCACGTGATGTTCTTCGCACAGGACAATATACCTCCGCTTCAA 2384 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 2254 GAAGACAAGAGAATCCCTCACGTGATGTTCTTTGCACAGGACAATATACCTCCGCTTCAA 2313 Query 2385 GAACTCTGTTACGACTACAATTACGCGCTCGATCAGGTACGTGACTCTAAGGGTAATATC 2444 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 2314 GAACTCTGTTACGACTACAATTATGCGCTCGATCAGGTACGCGACTCTAAGGGTAATATC 2373 Query 2445 AAGCAGAAACCTTGCTTTTGTGGTGCTGCCGTATGTAGGCGTAGGCTCTATTGA 2498 ||| ||||||||||| ||||||||||| ||| |||||||| ||||||||||||| Sbjct 2374 AAGAAGAAACCTTGCCTTTGTGGTGCTCCCGGATGTAGGCATAGGCTCTATTGA 2427 > Ahg930701 jgi|Araly1|930701|scaffold_303158.1 Length=304 Score = 187 bits (101), Expect = 3e-46 Identities = 183/219 (84%), Gaps = 19/219 (9%) Strand=Plus/Plus Query 120 TTGTGAATGGAAAT-GG-G--AGT-TATGGAGAAT--T-TGATGGTACATACGGAGATAT 171 |||||||||||||| || | | | |||||||||| | ||| ||||||| |||| || Sbjct 1 TTGTGAATGGAAATAGGTGTTA-TATATGGAGAATAATAAGATAGTACATAAAGAGACAT 59 Query 172 CAAAGGTTAAGTC-TCAGAGCAATGGTGA-G-----GTGGAGAAACGAGGAGTGTCAGTT 224 ||||| ||||||| | ||||||||| || | |||||||||||||||||||||||| Sbjct 60 CAAAGATTAAGTCGT-TGAGCAATGGAGAGGTTTTAGTGGAGAAACGAGGAGTGTCAGTT 118 Query 225 TTGGAGAATGGTGGTGTTTGCAAGCTTGATCGAATGAGTGGGCTTAAGTTTAAGCGTCGG 284 ||||||||||| |||||||||||| ||||||| |||| ||||| ||||| ||||| ||| Sbjct 119 TTGGAGAATGGAGGTGTTTGCAAGATTGATCGTATGACAGGGCTAAAGTTCAAGCGCCGG 178 Query 285 AAGGTTTTTGCTGTGAGGGACTTTCC-ACCGGGTTGTGG 322 || ||||||||||||||||| ||||| |||||||||||| Sbjct 179 AATGTTTTTGCTGTGAGGGA-TTTCCCACCGGGTTGTGG 216 > Ahg949296 jgi|Araly1|949296|scaffold_801183.1 Length=301 Score = 176 bits (95), Expect = 7e-43 Identities = 150/174 (86%), Gaps = 13/174 (7%) Strand=Plus/Plus Query 160 ATACGGAGATATCAAAGGTTAAGTC-TCAGAGCAATGGTGA-G-----GTGGAGAAACGA 212 |||| |||| ||||||| ||||||| | ||||||||| || | ||||| |||||| Sbjct 43 ATACAGAGACATCAAAGATTAAGTCGT-TGAGCAATGGAGAGGTTTTAGTGGAAAAACGA 101 Query 213 GGAGTGTCAGTTTTGGAGAATGGTGGTGTTTGCAAGCTTGATCGAATGA-GT-GGG-CTT 269 |||||||||||||||||||||||||||||||||||||||||| | |||| | ||| ||| Sbjct 102 GGAGTGTCAGTTTTGGAGAATGGTGGTGTTTGCAAGCTTGATTGTATGACGACGGGGCTT 161 Query 270 AAGTTTAAGCGTCGGAAGGTTTTTGCTGTGAGGGACTTTCC-ACCGGGTTGTGG 322 ||||||||||| ||||||||||||||||||| ||| ||||| |||||||||||| Sbjct 162 AAGTTTAAGCGCCGGAAGGTTTTTGCTGTGAAGGA-TTTCCCACCGGGTTGTGG 214 > Ahg932867 jgi|Araly1|932867|scaffold_400855.1 Length=304 Score = 176 bits (95), Expect = 7e-43 Identities = 181/219 (83%), Gaps = 19/219 (9%) Strand=Plus/Plus Query 120 TTGTGAATGGAAAT-GG-G--AGT-TATGGAGAAT--T-TGATGGTACATACGGAGATAT 171 |||||||||||||| || | | | |||||||||| | ||| ||||||| |||| || Sbjct 1 TTGTGAATGGAAATAGGTGTTA-TATATGGAGAATAATAAGATAGTACATAAAGAGACAT 59 Query 172 CAAAGGTTAAGTC-TCAGAGCAATGGTGA-G-----GTGGAGAAACGAGGAGTGTCAGTT 224 ||||| ||||||| | || |||| | || | |||||||||||||||||||||||| Sbjct 60 CAAAGATTAAGTCGT-TGAACAATAGAGAGGTTTTAGTGGAGAAACGAGGAGTGTCAGTT 118 Query 225 TTGGAGAATGGTGGTGTTTGCAAGCTTGATCGAATGAGTGGGCTTAAGTTTAAGCGTCGG 284 ||||||||||| |||||||||||| ||||||| |||| ||||| ||||| ||||| ||| Sbjct 119 TTGGAGAATGGAGGTGTTTGCAAGATTGATCGTATGACAGGGCTAAAGTTCAAGCGCCGG 178 Query 285 AAGGTTTTTGCTGTGAGGGACTTTCC-ACCGGGTTGTGG 322 || ||||||||||||||||| ||||| |||||||||||| Sbjct 179 AATGTTTTTGCTGTGAGGGA-TTTCCCACCGGGTTGTGG 216 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 97587207690 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5