BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22740.2
Length=2588
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899566 jgi|Araly1|899566|Al_scaffold_0004_216 2748 0.0
Ahg930701 jgi|Araly1|930701|scaffold_303158.1 187 3e-46
Ahg949296 jgi|Araly1|949296|scaffold_801183.1 176 7e-43
Ahg932867 jgi|Araly1|932867|scaffold_400855.1 176 7e-43
> Ahg899566 jgi|Araly1|899566|Al_scaffold_0004_216
Length=2427
Score = 2748 bits (1488), Expect = 0.0
Identities = 2150/2454 (88%), Gaps = 108/2454 (4%)
Strand=Plus/Plus
Query 126 ATGGAAATGGGAGTTATGGAGAATTTGATGGTACATACGGAGATATCAAAGGTTAAGTC- 184
||||||||||| ||||||||||||| |||||| |||||||||| |||||||||||||||
Sbjct 1 ATGGAAATGGGTGTTATGGAGAATTCGATGGTGCATACGGAGACATCAAAGGTTAAGTCG 60
Query 185 TCAGAGCAATGGTGA-G-----GTGGAGAAACGAGGAGTGTCAGTTTTGGAGAATGGTGG 238
| ||| |||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 61 T-TGAGTAATGGTGAGGTTTTAGTGGAGAAACGAGGAGTGTCAGTTTTGGAGAATGGTGG 119
Query 239 TGTTTGCAAGCTTGATCGAATGA-GTGGGCTTAAGTTTAAGCGTCGGAAGGTTTTTGCTG 297
||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||
Sbjct 120 TGTTTGCAAGCTTGATCGAATGACG-GGGCTTAAGTTTAAGCGCCGGAAGGTTTTTGCTG 178
Query 298 TGAGGGACTTTCCACC-GGGT----------TGTGGTTC-G--AGAG-CAATGGAAGTGA 342
||||||| ||||| || |||| ||||| | | | | | ||||||||||
Sbjct 179 TGAGGGATTTTCCGCCGGGGTGCGGGACCCGTGTGGAGCGGTTTGGGTCGATGGAAGTGA 238
Query 343 AGATTGCTTGTGAGAATGGGAATGTTGTTGAAGATGTTAAGGTTGTTGAGTCTTTGGTTA 402
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 239 AGAGTGCTTGTGAGAATGGGAATGTTGCTGAAGATGTTAAGGTTGTTGAGTCTTTAGTTA 298
Query 403 AAGAGGAG-GAGA--GT--T-TGG--G--GCA-G-AGAG-A-T-GCCTCTGAAAACGTGA 447
|||||||| |||| || | ||| | || | ||| | | | | || || | ||
Sbjct 299 AAGAGGAGAGAGATGGTGGTGTGGATGTATCAGGTGGAGAACTGGAAGCGGAGAATGGGA 358
Query 448 GTGATATCAGAATGGCTGAGCCGGTGGAGGTTCAGCC-TCTGAGAATTTGTTTGCCAGGA 506
||||| | || ||||||||| |||||||||||||||| | |||| ||||||||||||| |
Sbjct 359 GTGATGTTAGTATGGCTGAGGCGGTGGAGGTTCAGCCGT-TGAGCATTTGTTTGCCAGAA 417
Query 507 GGTGATGTGGTAAGAGACTTGTCTGTTACCG-C-G-GGA-G--AC-GAGT-GTTCAAACA 558
|| ||||||| ||||| ||| || || | | | ||| | | | || | | |||
Sbjct 418 GGGGATGTGG--AGAGAAATGT-TG-AACAGACTGTGGAGGTTGCTGGGTCGATGGGACA 473
Query 559 GTGAACAG--ATTGTGG---CGGGTTCTGGTGTTAGCAGCAGCAGCGGAACTGAAAACAT 613
| | | ||| || |||||||||||| |||||||||| | ||||||||||||
Sbjct 474 GAGCTTGGTTCTTGAGGATTCGGGTTCTGGTGCTAGCAGCAGCGGAACAACTGAAAACAT 533
Query 614 TGTCAGGGATATCGTTGTTTACGCAGATGAGAGCAGTCTAGGAATGGATAATTTGGATCA 673
|| |||||| |||||||||| ||||||||||||||||| ||||| ||| |||||||| |
Sbjct 534 GGTGAGGGATGTCGTTGTTTATGCAGATGAGAGCAGTCTGGGAATAGATGATTTGGATTA 593
Query 674 AACTCAGCCGCTAGAAATTGAAATGTCAGATGTTGCAGTTGCAAAACCGAGGCTTGTTGC 733
||| ||||| | |||||||| |||||||||||| | |||||||||||||| ||||||||
Sbjct 594 TACTGAGCCGTTGGAAATTGAGATGTCAGATGTTTCTGTTGCAAAACCGAGTCTTGTTGC 653
Query 734 GGGTAGAAAG-AAGGCAAAGAAAGGAATTGCATGTCATTCATCCTTGAAGGTT------- 785
|||||| ||| |||||||||||||||||||||| |||||||||||||||| ||
Sbjct 654 GGGTAG-AAGAAAGGCAAAGAAAGGAATTGCATTTCATTCATCCTTGAAGCTTACCAAAA 712
Query 786 -G-TTAGCCGAGAGTTTGGTGAAGGATCTAGGAAGAAGAAGAGTAAGAAG-AATTTATAT 842
| | |||||||| ||||||||||||||| |||| ||| |||||| || ||| |||||
Sbjct 713 AGAACAACCGAGAGTATGGTGAAGGATCTAGTAAGAGGAACAGTAAG-AGCAATATATAT 771
Query 843 TGGCGTGATAGGGAAAGTCTGGATTCTCCTGAGCA-GCTTCGGATACT-AGGTG-TT-GG 898
|||| | |||||||||||||||||| |||| | || | | || || || | || ||
Sbjct 772 TGGCTTTATAGGGAAAGTCTGGATTTTCCTCATCAGGAAAC--AT-CTCGGGAGCTTCGG 828
Query 899 -GACAAGCA-G-CGGTTCAAGCAG-CG-G-TGATAGTAGTCGGAACAAAGTAAAGGAAAC 952
|| || | | ||||||||||| | | |||||||| |||||||||||| ||||||||
Sbjct 829 ATACTAG-ATGTTGGTTCAAGCAGTGGTGATGATAGTATTCGGAACAAAGTTAAGGAAAC 887
Query 953 TCTACGTCTTTTCCATGGCGTTTGCAGAAA-GATTCTGCAGGAGGATGAAGCAAAGCCTG 1011
||| ||||||||||||||||| |||| ||| |||| ||||||||||||||||||||||||
Sbjct 888 TCTGCGTCTTTTCCATGGCGTGTGCA-AAAGGATTTTGCAGGAGGATGAAGCAAAGCCTG 946
Query 1012 AGGACCAAAGGAGAAAAGGTAAAGGTCTTAGAATAGATTTTGAGGCTTCGACCATTCTCA 1071
||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 947 AGGACCAAAGGAGAAAAGGTAAAGGTCTTAGAATAGATTTTGACGCTTCGAAGATTCTCA 1006
Query 1072 AAAGGAATGGCAAATTTCTCAACTCTGGTGTGCATATTTTGGGAGAAGTGCCTGGGGTTG 1131
|||||||||| |||| |||||| |||||| || ||||||||| | || ||||| ||||
Sbjct 1007 AAAGGAATGGGAAATATCTCAATTCTGGTACACAGATTTTGGGACATGTACCTGGAGTTG 1066
Query 1132 AGGTTGGTGATGAGTTCCAATATAGGATGGAGCTGAACATTCTTGGTATACATAAACCAA 1191
|||||||||||||||||| |||||||||||||||||||||||||||| |||| | |||||
Sbjct 1067 AGGTTGGTGATGAGTTCCTATATAGGATGGAGCTGAACATTCTTGGTGTACACAGACCAA 1126
Query 1192 GCCAGGCCGGTATCGATTATATGAAATATGGTAAGGCCAAAGTTGCGACAAGTATTGTAG 1251
|||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1127 GCCAAGCCGGTATCGATTATATGAAATATGGTAAGGGCATAGTTGCGACAAGTATTGTAG 1186
Query 1252 CCTCTGGAGGGTATGACGACCATCTGGATAACTCGGATGTCTTGACCTACACTGGTCAAG 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 CCTCTGGAGGGTATGACGACCATCTGGATAACTCGGATGTCTTGACCTACACTGGTCAAG 1246
Query 1312 GCGGAAACGTGATGCAAGTAAAGAAGAAGGG-AGAGGAACTGAAAGAGCCTGAAGACCAA 1370
||||||| ||||||||||||||||||||||| | |||||||||||||||| |||||||||
Sbjct 1247 GCGGAAATGTGATGCAAGTAAAGAAGAAGGGCA-AGGAACTGAAAGAGCCCGAAGACCAA 1305
Query 1371 AAGCTTATTACC-GGAAACCTCGCGTTAGCAACCAGCATAGAAAAACAA-ACCCCTGTGC 1428
|||||||| | | |||||||||||||||||||||||| || || || || || |||||||
Sbjct 1306 AAGCTTAT-ATCAGGAAACCTCGCGTTAGCAACCAGCTTA-AAGAAGAAGACACCTGTGC 1363
Query 1429 GTGTCATTAGAGGCAAACATAAGTCAACTCATGATAA-ATCAAAAGGTGGAAATTATGTT 1487
||||||||||||||||||||||||||||| | | || |||| ||||||||||||||
Sbjct 1364 GTGTCATTAGAGGCAAACATAAGTCAACTT-TAAAAACATCATCTGGTGGAAATTATGTC 1422
Query 1488 TACGACGGATTATATCTTGTGGAAA-AGTATTGGCAACAAGTCGGATCTCACGGTATGAA 1546
|||||||| || ||||||||| ||| | ||||||||| |||||||||||||||| ||| |
Sbjct 1423 TACGACGGTTTGTATCTTGTG-AAAGATTATTGGCAAGAAGTCGGATCTCACGGGATGTA 1481
Query 1547 TGTCTTCAAGTTTCAACTTAGGCGCATACCTGGACAACCTGAACTTTCTTGGGTAGAGGT 1606
||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||
Sbjct 1482 TGTCTTCAAGTTTCAACTTAGGCGCATACCTGGACAATCTGAACTTTCATGGATAGAGGT 1541
Query 1607 GAAGAAATCTAAGTCAAAATACCGGGAAGGTCTATGCAAGCTTGACATCTCAGAAGGGAA 1666
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1542 GAAGAAATCTAAGTCAAAATACCGGGAAGGTATATGCAAGCTTGACATCTCAGAAGGGAA 1601
Query 1667 AGAGCAGTCACCCATTAGCGCTGTGAACGAAATAGACGACGAGAAACCGCCTTTGTTCAC 1726
||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1602 AGAGCTGTCACCCATTAGCGCTGTGAATGAAATAGATGACGAGAAACCGCCTTTGTTCAC 1661
Query 1727 CTACACTGTTAAACTGATTTACCCAGATTGGTGCAGACCAGTTCCTCCAAAGTCATGCTG 1786
|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1662 CTACACAGTTAAAATGATTTACCCAGATTGGTGCAGACCAGTTCCTCCAAAGTCATGCGG 1721
Query 1787 TTGCACCACGCGCTGCACCGAAGCTGAAGCGAGGGTGTGCGCTTGTGTGGAGAAAAACGG 1846
||||||||| |||||||| ||||| | | || | || ||| | |||||| ||||||||
Sbjct 1722 TTGCACCACACGCTGCACAGAAGCC-A-G-GAAG-TGCGCG-T-GTGTGGTGAAAAACGA 1775
Query 1847 TGGAGAGATACCGTACAACTTCGATGGAGCCATTGTTGGTGCAAAACCTACTATCTATGA 1906
||||||||||||||||||| |||||||||||||||||| || || | | |||||||||
Sbjct 1776 CGGAGAGATACCGTACAACTACGATGGAGCCATTGTTGGGGCTAAGCTTTTTATCTATGA 1835
Query 1907 ATGTGGCCCACTCTGCAAATGCCCTTCTAGTTGCTACCTAAGAGTCACACAGCATGGGAT 1966
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1836 ATGTGGCCCGCTCTGCAAATGCCCTTCTAGTTGCTACCTAAGAGTCACACAGCACGGGAT 1895
Query 1967 CAAGTTACCGCTTGAGATCTTCAAAACCAAGTCAAGAGGTTGGGGAGTGAGAT-GTCTTA 2025
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1896 CAAGTTACCGCTTGAGATCTTCAAAACCAAGTCAAGAGGTTGGGGAGTGAGATCG-CTTA 1954
Query 2026 AGTCGATCCCTATTGGTAGCTTCATATGTGAATACGTTGGTGAACTTTTAGAGGATAGTG 2085
| ||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||| |
Sbjct 1955 AATCGATCCCTATTGGTAGTTTCATATGCGAATACGTTGGTGAACTCTTAGATGATAGCG 2014
Query 2086 AAGCAGAAAGAAGAATCGGGAACGACGAGTATCTCTTTGATATTGGTAACAGATATGATA 2145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2015 AAGCAGAAAGAAGAATCGGGAACGACGAGTATCTCTTTGATATTGGTAACAGATATGATA 2074
Query 2146 ACTCTTTAGCTCAAGGGATGTCAGAGCTAATGCTGGGGACACAGGCAGGCCGATCTATGG 2205
|||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 2075 ACTCTTTAGCGCAAGGGATGTCAGAGCTAATGCCAGGGACACAGGCAGGCCGAGCTATGG 2134
Query 2206 CAGAAGGTGATGAGTCGAGTGGATTCACCATTGATGCAGCAA-GTAAGGGTAATGTTGGG 2264
|||||||||||||| || |||||||||||||||||||||||| | ||||| ||| |||||
Sbjct 2135 CAGAAGGTGATGAGGCGGGTGGATTCACCATTGATGCAGCAAAG-AAGGGGAATATTGGG 2193
Query 2265 AGGTTCATAAACCATAGCTGCTCGCCAAATCTGTACGCCCAAAACGTTTTGTATGATCAT 2324
||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 2194 AGGTTCATAAACCATAGCTGCTCGCCAAATCTGTATGCACAAAACGTATTGTATGATCAT 2253
Query 2325 GAAGACTCTAGAATCCCTCACGTGATGTTCTTCGCACAGGACAATATACCTCCGCTTCAA 2384
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2254 GAAGACAAGAGAATCCCTCACGTGATGTTCTTTGCACAGGACAATATACCTCCGCTTCAA 2313
Query 2385 GAACTCTGTTACGACTACAATTACGCGCTCGATCAGGTACGTGACTCTAAGGGTAATATC 2444
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 2314 GAACTCTGTTACGACTACAATTATGCGCTCGATCAGGTACGCGACTCTAAGGGTAATATC 2373
Query 2445 AAGCAGAAACCTTGCTTTTGTGGTGCTGCCGTATGTAGGCGTAGGCTCTATTGA 2498
||| ||||||||||| ||||||||||| ||| |||||||| |||||||||||||
Sbjct 2374 AAGAAGAAACCTTGCCTTTGTGGTGCTCCCGGATGTAGGCATAGGCTCTATTGA 2427
> Ahg930701 jgi|Araly1|930701|scaffold_303158.1
Length=304
Score = 187 bits (101), Expect = 3e-46
Identities = 183/219 (84%), Gaps = 19/219 (9%)
Strand=Plus/Plus
Query 120 TTGTGAATGGAAAT-GG-G--AGT-TATGGAGAAT--T-TGATGGTACATACGGAGATAT 171
|||||||||||||| || | | | |||||||||| | ||| ||||||| |||| ||
Sbjct 1 TTGTGAATGGAAATAGGTGTTA-TATATGGAGAATAATAAGATAGTACATAAAGAGACAT 59
Query 172 CAAAGGTTAAGTC-TCAGAGCAATGGTGA-G-----GTGGAGAAACGAGGAGTGTCAGTT 224
||||| ||||||| | ||||||||| || | ||||||||||||||||||||||||
Sbjct 60 CAAAGATTAAGTCGT-TGAGCAATGGAGAGGTTTTAGTGGAGAAACGAGGAGTGTCAGTT 118
Query 225 TTGGAGAATGGTGGTGTTTGCAAGCTTGATCGAATGAGTGGGCTTAAGTTTAAGCGTCGG 284
||||||||||| |||||||||||| ||||||| |||| ||||| ||||| ||||| |||
Sbjct 119 TTGGAGAATGGAGGTGTTTGCAAGATTGATCGTATGACAGGGCTAAAGTTCAAGCGCCGG 178
Query 285 AAGGTTTTTGCTGTGAGGGACTTTCC-ACCGGGTTGTGG 322
|| ||||||||||||||||| ||||| ||||||||||||
Sbjct 179 AATGTTTTTGCTGTGAGGGA-TTTCCCACCGGGTTGTGG 216
> Ahg949296 jgi|Araly1|949296|scaffold_801183.1
Length=301
Score = 176 bits (95), Expect = 7e-43
Identities = 150/174 (86%), Gaps = 13/174 (7%)
Strand=Plus/Plus
Query 160 ATACGGAGATATCAAAGGTTAAGTC-TCAGAGCAATGGTGA-G-----GTGGAGAAACGA 212
|||| |||| ||||||| ||||||| | ||||||||| || | ||||| ||||||
Sbjct 43 ATACAGAGACATCAAAGATTAAGTCGT-TGAGCAATGGAGAGGTTTTAGTGGAAAAACGA 101
Query 213 GGAGTGTCAGTTTTGGAGAATGGTGGTGTTTGCAAGCTTGATCGAATGA-GT-GGG-CTT 269
|||||||||||||||||||||||||||||||||||||||||| | |||| | ||| |||
Sbjct 102 GGAGTGTCAGTTTTGGAGAATGGTGGTGTTTGCAAGCTTGATTGTATGACGACGGGGCTT 161
Query 270 AAGTTTAAGCGTCGGAAGGTTTTTGCTGTGAGGGACTTTCC-ACCGGGTTGTGG 322
||||||||||| ||||||||||||||||||| ||| ||||| ||||||||||||
Sbjct 162 AAGTTTAAGCGCCGGAAGGTTTTTGCTGTGAAGGA-TTTCCCACCGGGTTGTGG 214
> Ahg932867 jgi|Araly1|932867|scaffold_400855.1
Length=304
Score = 176 bits (95), Expect = 7e-43
Identities = 181/219 (83%), Gaps = 19/219 (9%)
Strand=Plus/Plus
Query 120 TTGTGAATGGAAAT-GG-G--AGT-TATGGAGAAT--T-TGATGGTACATACGGAGATAT 171
|||||||||||||| || | | | |||||||||| | ||| ||||||| |||| ||
Sbjct 1 TTGTGAATGGAAATAGGTGTTA-TATATGGAGAATAATAAGATAGTACATAAAGAGACAT 59
Query 172 CAAAGGTTAAGTC-TCAGAGCAATGGTGA-G-----GTGGAGAAACGAGGAGTGTCAGTT 224
||||| ||||||| | || |||| | || | ||||||||||||||||||||||||
Sbjct 60 CAAAGATTAAGTCGT-TGAACAATAGAGAGGTTTTAGTGGAGAAACGAGGAGTGTCAGTT 118
Query 225 TTGGAGAATGGTGGTGTTTGCAAGCTTGATCGAATGAGTGGGCTTAAGTTTAAGCGTCGG 284
||||||||||| |||||||||||| ||||||| |||| ||||| ||||| ||||| |||
Sbjct 119 TTGGAGAATGGAGGTGTTTGCAAGATTGATCGTATGACAGGGCTAAAGTTCAAGCGCCGG 178
Query 285 AAGGTTTTTGCTGTGAGGGACTTTCC-ACCGGGTTGTGG 322
|| ||||||||||||||||| ||||| ||||||||||||
Sbjct 179 AATGTTTTTGCTGTGAGGGA-TTTCCCACCGGGTTGTGG 216
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97587207690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5