BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22750.2
Length=920
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481136 jgi|Araly1|481136|fgenesh2_kg.4__196__AT2G22750.1 1186 0.0
> Ahg481136 jgi|Araly1|481136|fgenesh2_kg.4__196__AT2G22750.1
Length=1120
Score = 1186 bits (642), Expect = 0.0
Identities = 837/923 (91%), Gaps = 45/923 (5%)
Strand=Plus/Plus
Query 1 CATGAACTCACTCGTCGGAGATGTTCCACAGTCTCTCTCATCTCTTGATGATACCACCAC 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CATGAATTCACTCGTCGGAGATGTTCCACAGTCTCTCTCATCTCTTGATGATACCACCAC 60
Query 61 TTGTTATAACCTTGATGCTTCTTGTAATAAAAG-TTTGGTAGAAGA-AAGACCTTCAAAG 118
|||||||||| |||||||||||| |||| | | |||||| ||||| || ||||||||||
Sbjct 61 TTGTTATAACTTTGATGCTTCTTATAAT-GATGATTTGGTCGAAGAGAA-ACCTTCAAAG 118
Query 119 ATCCTCAAGACCACTCACATATCACCAAACTTACATCCTTTTTCTTCTTCTAATCCTCCT 178
|||||||||||||||| |||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 119 ATCCTCAAGACCACTCTCATATCGCCAAAGTTACATCCTTTTTCTTCTTCCAATCCTCCT 178
Query 179 CCTCCAAAGCACCAGCCCTCTTCTAGGATTCTTTCTTTTGAAAAGACAGGTTTACATGTT 238
||||||||| ||||||||||||||| |||| ||||||| |||||||| |||||| ||||
Sbjct 179 CCTCCAAAGGACCAGCCCTCTTCTACGATTATTTCTTTCGAAAAGACGGGTTTAAATGTA 238
Query 239 ATGAATCACAACTCTCCAAACTTAATATTTAGCCCCAAGGACGAAGAAATTGGATTACCA 298
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 239 ATGAATCACAACTCTCCAAACTTAATATTTAGCACCAAGGAAGAAGAAATTGGATTACCA 298
Query 299 GAGCATAAGAAAGCCGAGCTGATAATAAGAGGGACAAAGAGAGCTCAATCCTTGACTCGA 358
| || || ||| |||||||||||||||||||||||||||| || ||| |||||||||||
Sbjct 299 AACCAGAAAAAAACCGAGCTGATAATAAGAGGGACAAAGAGGGCGCAACCCTTGACTCGA 358
Query 359 AGCCAATCAAATGCTCAAGATCACATACTGGCAGAGAGAAAACGGAGAGAGAAGCTTACT 418
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 359 AGCCAATCAAATGCTCAAGATCACATACTCGCAGAGAGAAAACGGAGAGAGAAGCTTACT 418
Query 419 CAAAGATTTGTAGCTCTTTCCGCGCTAATTCCTGGCCTAAAGAAGATGGACAAGGCTTCT 478
|||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||
Sbjct 419 CAAAGATTTGTAGCTCTTTCAGCCCTAGTTCCTGGCCTAAAGAAGATGGACAAGGCTTCT 478
Query 479 GTGTTGGGAGATGCAATAAAGCATATAAAGTACCTCCAAGAGAGTGTGAAAGAGTATGAG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GTGTTGGGAGATGCAATAAAGCATATAAAGTACCTCCAAGAGAGTGTGAAAGAGTATGAG 538
Query 539 GAACAAAAGAAGGAAAAGACAATGGAATCAGTGGTTCTTGTAAAGAAGTCT-AGTCTGGT 597
||||||||||||||||| ||||||| | || || |||||||||||| || || ||
Sbjct 539 GAACAAAAGAAGGAAAAAACAATGG--T---TG-TT---GTAAAGAAGTCTCAG-CTAGT 588
Query 598 TTTAGATGAAAATCATCAACCATCATCATCATCTTCCTCAGATGGAAATCGCAATAGCTC 657
|||||| |||||||||||| ||||||||||| | || || | | | |
Sbjct 589 TTTAGACGAAAATCATCAA---TCATCATCATC--C-TC-GA-G----T-----T--C-- 627
Query 658 GAGCTCAAATCTTCCAGAAATAGAAGTTAGGGTTTCAGGAAAAGATGTTCTTATTAAGAT 717
| || ||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 628 -A----AA-TCTTCCAGAGATAGAAGTTAGGGTTTCGGGAAAAGATGTTCTTATTAAGAT 681
Query 718 CCTATGCGAGAAGCAAAAGGGTAATGTGATCAAGATTATGGGGGAGATTGAAAAGCTTGG 777
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 682 CCTATGCGAGAAGCAAAAGGGTAATGTGATCAAGATTATGGGGGAAATTGAGAAGCTTGG 741
Query 778 TTTGTCTATCACCAACAGCAATGTCTTGCCCTTTGGACCCACTTTTGACATCTCTATTAT 837
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 742 TTTGTCTATCACCAACAGCAATGTCTTGCCCTTTGGACCCGCTTTTGACATCTCTATTAT 801
Query 838 CGCTCAGAAGAATAACAATTTTGATATGAAAATCGAGGATGTTGTGAAGAACTTGAGTTT 897
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 802 CGCTCAGAA---TAACAATTTTGATATGAAAATCGATGATGTTGTGAAGAACTTGAGTTG 858
Query 898 TGGCTTATCAAAGCTCACTTAAT 920
|||||||||||||||||||||||
Sbjct 859 TGGCTTATCAAAGCTCACTTAAT 881
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34120010715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5