BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22760.1
Length=1219
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481137 jgi|Araly1|481137|fgenesh2_kg.4__197__AT2G22760.1 1153 0.0
> Ahg481137 jgi|Araly1|481137|fgenesh2_kg.4__197__AT2G22760.1
Length=1047
Score = 1153 bits (624), Expect = 0.0
Identities = 880/996 (88%), Gaps = 48/996 (5%)
Strand=Plus/Plus
Query 132 TATGGATGAAGATTTTTTCTTACCCGATTTCTCACTAGTAGACATTGATTTCGACTTTAA 191
|||||||||||| || |||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 49 TATGGATGAAGACTTCTTCTTAACCGATTTCTCACTAGAAGACATTGATTTCGACTTTAA 108
Query 192 TATTTACGAAGAAAATAATTTATCACCTGATGAATCTTTATCAAATTCACGAAGAGCTGA 251
||||||||| ||||| ||| |||||||||||| || | | ||||||
Sbjct 109 TATTTACGAGGAAAAAAATCTATCACCTGATG-----------AA-T--C----AGCTGA 150
Query 252 TCAATCGTCAAAGTTTGATCATCAAATGCATTTTGAGTGCCTCAGAGAGAAGCCAAAGGC 311
|||||| ||||| |||||||||||||||||| |||||| |||||||||| ||||||| ||
Sbjct 151 TCAATCATCAAAATTTGATCATCAAATGCATCTTGAGTTCCTCAGAGAGCAGCCAAA-GC 209
Query 312 AGCGGTGAAGCCTATGATGAAGATCAACAACAAGCAACAACTGATTTCTTTTGATTTCTC 371
| || || ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 210 --C-----AG----TGGTGAAGATCAACAACAAGCAACAACTGATTTCTTTTGACTTCTC 258
Query 372 TAGTAATGTTAT-TTCTTCTCCAGCCGCGGAGGAGATCATTATGGATAAATTGGTTGGTC 430
|||||||| | | ||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 259 TAGTAATG-TGTCTTCTTCTCCAGCCACGGAGGAGATCATTATGGATAAATTGGTTGGAC 317
Query 431 GTGGAACCAAAAGAAAAACATGTTCTCATGGCACAAGATCTCCGGTTCTTGCGAAAGAAC 490
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 318 ATGGAACCAAAAGAAAAACATGTTTTCATGGCACAAGATCTCCGGTTCTAGCGAAAGAAC 377
Query 491 ATGTTTTAGCCGAGAGAAAGCGCCGTGAGAAGCTTTCTGAAAAATTCATTGCTCTTTCAG 550
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 378 ATGTTTTAGCCGAGAGAAATCGCCGTGAGAAGCTTTCTCAAAAATTCATTGCTCTTTCAG 437
Query 551 CTCTCCTTCCCGGGCTTAAGAAGGCGGACAAGGTAACGATTCTTGATGACGCGATCTCGC 610
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 438 CTCTTCTTCCCGGGCTTAAGAAGGCGGACAAGGTAACGATTCTTGATGACGCGATCTCAC 497
Query 611 GTATGAAACAACTCCAAGAACAACTAAGAACGCTCAAGGAAGAAAAAGAAGCAACGAGAC 670
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||
Sbjct 498 GTATGAAACAACTCCAAGAACAACTAAGAAAGCTCAAAGAAGAAAAAGAAGCAACAAGAG 557
Query 671 AAATGGAATCCA-TGATTCTTGTAAAGAAATCTAAAGTGTTTTTCGACGAGGAACCTAAC 729
|||| ||||| | |||||||| |||||||||||| | ||||||||| ||||||||||
Sbjct 558 AAATTCAATCCCGT-ATTCTTGTGAAGAAATCTAAACTACTTTTCGACGCGGAACCTAAC 616
Query 730 CTATCATGTTCTCCT-TCAGTTCAT-ATTGAATTCGATCAAGCATTACCAGAAATCGAAG 787
||||||| |||| || | || |||| || |||| |||||||| || ||||||||||| |
Sbjct 617 CTATCATCTTCTACTCT-AGATCATGATC-AATTTGATCAAGCGTTGCCAGAAATCGATG 674
Query 788 CGAAAATTTCTCAAAATGACATTCTCATCCGAATCCTTTGCGAGAAAAGCAAAGGGTGCA 847
| ||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 675 CAAAAATATCTCAAAACGACATTCTCATCCGAATCCACTGCGAGAAAAGCAAAGGGTGCA 734
Query 848 TGATCAACATACTAAACACAATTGAAAA-CTTTCAATTGCGCATTGAAAATAGCATCGTA 906
|||| ||||||||||| ||| ||||||| ||| ||| ||||||| ||||||||||||||
Sbjct 735 TGATTAACATACTAAAGACAGTTGAAAATCTT-CAACTGCGCATCGAAAATAGCATCGTT 793
Query 907 TTGCCATTCGGAGACTCGACTCTCGACATCACAGTCCTTGCACAGATGGATAAAGATTTT 966
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 TTGCCATTCGGAGACTCAACTCTCGACATCACAGTCCTTGCACAGATGGATAAAGATTTT 853
Query 967 TCGATGAGTATACTTAAGGATCTTGTACGGAACCTGAGACTCGCAATGGTTTAGGTCTTC 1026
||| ||||| ||||||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct 854 TCGGTGAGTGTACTTAAGGATCTCGTAAGGGACCTGAGACTCGCAATGGTTTAGGTCTTC 913
Query 1027 TTTCAAGTTTTAGTAACCTGAGAC-T-GTACAT---T-GACACAATCGTTTCGTGGATTT 1080
|| ||||||| |||||||||||| | |||||| | ||| ||||||||||||||||||
Sbjct 914 TTCCAAGTTTCAGTAACCTGAGAGATTGTACATGCATTGACGCAATCGTTTCGTGGATTT 973
Query 1081 GCTATCGTTTTCTTCTTGAG-ATTTTTTCACACGTG 1115
||| ||||||||||| | || |||||| ||||||||
Sbjct 974 GCTGTCGTTTTCTTCCTAAGGATTTTT-CACACGTG 1008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45518762898
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5