BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22770.1
Length=1370
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481138 jgi|Araly1|481138|fgenesh2_kg.4__198__AT2G22770.1 1975 0.0
> Ahg481138 jgi|Araly1|481138|fgenesh2_kg.4__198__AT2G22770.1
Length=1336
Score = 1975 bits (1069), Expect = 0.0
Identities = 1249/1333 (94%), Gaps = 23/1333 (2%)
Strand=Plus/Plus
Query 30 ATATACTCCTAAAGttttctttcctttagcttcttgtttagttttattctttcaacatta 89
||||| ||||||||||||||||||||| ||||||||||||| ||||||||| |
Sbjct 18 ATATA-TCCTAAAGTTTTCTTTCCTTTCGCTTCTTGTTTAG--------TTTCAACATAA 68
Query 90 acttttttttACTCTCTTG-TCAAAAGAGAAAAAGAGTTCTTG---TAATGGATGATTCA 145
|||||||||| || ||||| || |||| ||||| || | ||| |||||| ||||||
Sbjct 69 ACTTTTTTTTGCTTTCTTGATC-TAAGA-AAAAAAAG-T-TTGAAAAAATGGAAGATTCA 124
Query 146 AGCTTTATGGATTTGATGATCGACACTGACGAGTATCTGATCGATGACTGGGAATCCGAT 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 AGCTTTATGGATTTGATGATCGACACTGACGAGTATCTGATCGATGACTGGGAATCCGAT 184
Query 206 TTCCCGATATGCGGGGAAACTAACACCAACCCCGGTTCCGAGTCTGGATCTGGAACCGGG 265
|||||||||| ||| |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 185 TTCCCGATATACGGAGAAACTAACACCAAACCCGGTTCTGAGTCTGGATCTGGAACCGGG 244
Query 266 TTTGAGTTGCTAGCAGAAAGACCAACGAAGCAAATGAAAACCAACAACAACATGAATTCA 325
||||||||| || |||| |||||||| |||||||||||||||||||||||||| || |||
Sbjct 245 TTTGAGTTGGTACCAGAGAGACCAACAAAGCAAATGAAAACCAACAACAACATCAACTCA 304
Query 326 ACAtcttcttctccgtcgtcttcttcttcttc-t-g-gttctCGCACGTCACAAGTGATC 382
|||||||||||||||||||| ||||||||||| | | |||| ||||||||||||||||||
Sbjct 305 ACATCTTCTTCTCCGTCGTCGTCTTCTTCTTCTTCGTGTTCGCGCACGTCACAAGTGATC 364
Query 383 TCATTTGGGTCTCCAGACACGAAAACCAACCCGGTCGAGACATCTTTGAACTTCTCCAAC 442
||||| ||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 365 TCATTCGGGTCTCCAGACACGAAGACAAACCCGGTCGAGACATCATTGAACTTCTCCAAC 424
Query 443 CAAGTAAGCATGGATCAGAAAGTGGGGTCGAAAAGAAAAGATTGTGTTAACAATGGAGGA 502
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 425 CAAGTAAGCATGGATGAGAAAGTGGGGTCCAAAAGAAAAGATTGTGTTAACAATGGAGGA 484
Query 503 AGAAGAGAACCACATCTATTGAAAGAACATGTTTTGGCTGAACGAAAACGTCGACAAAAG 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 AGAAGAGAACCACATCTATTGAAAGAACATGTTTTGGCTGAACGAAAACGTCGACAAAAG 544
Query 563 CTCAACGAGCGTTTGATTGCTCTCTCTGCTCTTCTTCCTGGCCTCAAAAAGACGGACAAG 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 CTCAACGAGCGTTTGATTGCTCTCTCTGCTCTTCTTCCTGGCCTCAAAAAGACGGACAAG 604
Query 623 GCAACAGTTCTTGAAGATGCCATCAAACATTTGAAACAACTTCAAGAGCGGGTAAAGAAG 682
||||| ||||||||||| || ||||| |||||||||||||||||||| ||||||||||||
Sbjct 605 GCAACCGTTCTTGAAGACGCGATCAAGCATTTGAAACAACTTCAAGAACGGGTAAAGAAG 664
Query 683 CTGGAGGAGGAGCGAGT-GGTGACCAAGAAAATGGATCAATCAATTATATTGGTGAAGAG 741
|| ||||| |||||||| || ||||||||| ||||||||||| ||||||||||||||||
Sbjct 665 CTAGAGGAAGAGCGAGTCGG-GACCAAGAATATGGATCAATCGGTTATATTGGTGAAGAG 723
Query 742 ATCTCAAGTGTATTTAGATGATGATTCTTCATCTTATTCTTCTACTTGCTCTGCTGCGTC 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 ATCTCAAGTGTATTTAGATGATGATTCTTCATCTTATTCTTCTACTTGCTCTGCTGCGTC 783
Query 802 TCCTCTGTCTTCTTCTTCGGACGAAGTTTCGATCTTCAAACAAACAATGCCTATGATCGA 861
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 784 TCCTCTGTCTTCTTCTTCGGACGAAGTTTCGATCTTGAAACAAACAATGCCTATGATCGA 843
Query 862 AGCCCGAGTTTCAGACAGAGATTTGTTGATTAGAGTCCATTGTGAGAAGAACAAAGGGTG 921
||| |||| |||| || ||||||| |||||| ||| |||||||||||||||||||||||
Sbjct 844 AGCAAGAGTGTCAGGCAAAGATTTGCTGATTACAGTTCATTGTGAGAAGAACAAAGGGTG 903
Query 922 TATGATTAAGATCTTAAGTTCCTTGGAGAAGTTTCGTCTTGAAGTAGTCAATAGCTTCAC 981
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 904 TATGATTAAGATCTTAAGTTCCTTGGAGAATTTTCGTCTTGAAGTAGTCAATAGCTTCAC 963
Query 982 TTTACCATTTGGAAATTCAACTCTCGTTATAACCATTCTCACTAAGATGGACAACAAATT 1041
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||
Sbjct 964 TTTACCATTTGGAAATTCAACTATCGTTATAACCATTCTCTCTAAGATGGACAACAAGTT 1023
Query 1042 TTCTCGACCAGTTGAAGAAGTGGTGAAGAACATAAGAGTTGCGTTAGCTGAATAATATTT 1101
||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||| |||
Sbjct 1024 TTCTCGACCTGTTGAAGAAGTGGTGAAGAACATTAGACTTGCGTTAGCTGAATAATCTTT 1083
Query 1102 TAAAAAACGTTT-ATGTGAATTTCGCAGTGGTTAAACGTGTTAGATTTGGTCTCCAATTT 1160
| |||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1084 TTAAAAACGTTTTATGTGAATTTCGCAGTGAATAAACGTGTTAGATTTGGTCCCCAATTT 1143
Query 1161 TGACCAGATCACTCGGTTTAGTTGAATAATGAGTAGTTGGATAATAAAACCAGATATATG 1220
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1144 TGACCAGATCACTCGGTTTAGTTGAATAATGACTAGTTGGATAATAAAACCAGAGATATG 1203
Query 1221 CACGAAATATGGGATTTTGTCGTTTGTTGAGTGCAAAAGCTGGATTGGTGTGTGTACCTA 1280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 CACGAAATATGGGATTTTGTCGTTTGTTGAGTGCAAAAGCTGGATTGGTGTGTGTACCTA 1263
Query 1281 ATTATGGCTGTATCATTGGTTTTGATACTTTGATATATATTTTTCCCCAATATCATTGGG 1340
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1264 ATTATGGCTGTATCATTGGTTTTGATACTTTGATATATATTTTTCCCCAATGTCATTGGG 1323
Query 1341 TTGGTTCAATAAT 1353
|||| ||||||||
Sbjct 1324 TTGGATCAATAAT 1336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51275323365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5