BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22780.1
Length=1876
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481139 jgi|Araly1|481139|fgenesh2_kg.4__199__AT2G22780.1 2061 0.0
> Ahg481139 jgi|Araly1|481139|fgenesh2_kg.4__199__AT2G22780.1
Length=1615
Score = 2061 bits (1116), Expect = 0.0
Identities = 1401/1526 (92%), Gaps = 69/1526 (5%)
Strand=Plus/Plus
Query 75 TCTTGCCACACTTCCCAATACATGGATCCA-TTT--TGACGTCATCTTTATCACTA--TC 129
||||||||| |||||||||||||||||||| ||| |||||||||||| ||||||| ||
Sbjct 1 TCTTGCCACGCTTCCCAATACATGGATCCATTTTGCTGACGTCATCTTCATCACTATCTC 60
Query 130 TCTCTATTATATAAATCTCTTCGTACCCTTTTACCGATTCTTCACCGTGATCGCTTAATC 189
||||||||||||||||||||||||| | || || || ||| || | ||
Sbjct 61 TCTCTATTATATAAATCTCTTCGTA--C-----CC--TT-TT-ACC--GA-----T--TC 100
Query 190 AGACCTCAATTTCGTTGTTAAAGAACAAAGCTTTAAGCAGCCATGGATCCAAACCAACGT 249
|||||||||||||| | | | || ||||||| |||||||||||||||||
Sbjct 101 AGACCTCAATTTCG--G-T----------G-TTGAAGCAGCTATGGATCCAAACCAACGC 146
Query 250 ATCGCGAGAATCTCTGCTCATCTCAATCCTCCTAATCTTCATAATCAGATTGCTGACGGG 309
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 147 ATCGCGAGAATCTCTGCTCATCTCAATCCTCCTAATCTTGATAATCAGATTGTTGACGGG 206
Query 310 TCAGGTTTGAATCGGGTGGCTTGTCGGGCAAAAGGTGGATCACCCGGATTCAAAGTGGCG 369
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 207 TCGGGTTTGAATCGGGTGGCTTGTCGGGCAAAAGGTGGATCACCTGGATTCAAAGTGGCG 266
Query 370 ATACTTGGAGCAGCTGGTGGAATTGGACAACCTCTTGCGATGTTGATGAAGATGAATCCT 429
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 267 ATACTTGGAGCAGCTGGAGGAATTGGGCAACCTCTTGCGATGTTGATGAAGATGAATCCT 326
Query 430 TTGGTTTCGGTTCTTCATCTCTATGATGTTGCTAATGCTCCTGGTGTTACTGCTGATATT 489
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 327 TTGGTTTCGGTTCTTCATCTTTATGATGTTGCTAATGCTCCTGGTGTTACTGCTGATATT 386
Query 490 AGTCATATGGATACTAGTGCCGTTGTTCGTGGATTTCTCGGGCAGCCGCAGTTAGAGGAA 549
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 387 AGTCACATGGATACTAGTGCCGTTGTTCGTGGATTTCTCGGGCAACCGCAGTTAGAGGAA 446
Query 550 GCACTTACGGGTATGGATTTAGTGATCATACCTGCTGGTGTTCCGAGGAAACCAGGGATG 609
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 447 GCACTTACGGGTATGGATTTAGTGATTATACCTGCTGGTGTTCCGAGGAAACCAGGGATG 506
Query 610 ACGAGGGATGATCTGTTTAACATTAATGCTGGGATTGTGAGGACACTCTCTGAAGCTATA 669
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 507 ACGAGGGATGATCTGTTTAACATTAATGCTGGGATCGTGAGGACACTCTCTGAAGCTATA 566
Query 670 GCTAAATGTTGTCCTAAAGCAATTGTGAATATAATCAGTAATCCGGTGAACTCCACGGTG 729
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 567 GCTAAATGTTGTCCTAAAGCAGTTGTGAATATAATCAGTAATCCGGTGAACTCCACGGTG 626
Query 730 CCAATCGCAGCTGAGGTTTTCAAGAAAGCTGGAACCTTTGATCCAAAGAAACTCATGGGT 789
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 627 CCTATCGCAGCTGAGGTTTTTAAGAAAGCTGGAACCTTTGATCCAAAGAAACTCATGGGA 686
Query 790 GTCACTATGCTTGATGTTGTTAGAGCTAATACCTTTGTGGCGGAAGTAATGAGTCTTGAT 849
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 687 GTCACTATGCTTGATGTTGTTAGAGCTAATACTTTTGTGGCGGAAGTAATGAGTCTTGAT 746
Query 850 CCCCGTGAAGTTGAAGTTCCGGTTGTTGGAGGACACGCAGGAGTTACGATTTTACCACTG 909
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 747 CCCCGTGAAGTTGATGTTCCGGTTGTTGGAGGACACGCAGGAGTTACGATTTTACCGCTG 806
Query 910 CTTTCGCAGGTGAAACCTCCTTGCTCGTTCACTCAAAAAGAGATTGAATATCTCACAGAC 969
||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 807 CTTTCTCAGGTGAAACCCCCTTGCTCATTCACTCAAAAAGAGATTGAATATCTCACAGAC 866
Query 970 CGCATCCAAAACGGTGGCACTGAAGTTGTTGAGGCTAAAGCTGGAGCAGGTTCTGCAACA 1029
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 867 CGCATCCAAAACGGTGGCACTGAAGTTGTTGAGGCTAAAGCTGGTGCAGGTTCTGCAACA 926
Query 1030 CTATCCATGGCATATGCAGCAGTGGAGTTTGCAGATGCTTGCCTCAGGGGTCTACGAGGT 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 CTATCCATGGCATATGCAGCAGTGGAGTTTGCAGATGCTTGCCTCAGGGGTCTACGAGGT 986
Query 1090 GATGCAAACATCGTTGAGTGCGCATATGTGGCATCCCATGTGACTGAGCTTCCCTTCTTC 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 GATGCAAACATCGTTGAGTGCGCATATGTGGCATCCCATGTGACTGAGCTTCCCTTCTTC 1046
Query 1150 GCATCGAAGGTGCGTCTGGGACGATGTGGGATCGATGAAGTGTACGGCCTTGGACCATTG 1209
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1047 GCATCGAAGGTGCGTCTGGGACGATGTGGGATCGACGAAGTGTACGGTCTTGGACCATTG 1106
Query 1210 AACGAATATGAGAGGATGGGATTAGAGAAGGCAAAGAAAGAGCTTTCAGTAAGTATTCAT 1269
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1107 AACGAATATGAGAGGATGGGATTAGAGAAGGCAAAGAAAGAGCTTTCAGGAAGTATTGAG 1166
Query 1270 AAAGGTGTTACCTTTGCGAAGAAATAAAGAGACTCGATCGTGAATAAACACACTT--AAG 1327
|||||||||||||||||||||||||||||||||| |||||||||| || |||||| |||
Sbjct 1167 AAAGGTGTTACCTTTGCGAAGAAATAAAGAGACTTGATCGTGAAT-AA-ACACTTGAAAG 1224
Query 1328 CGATGGTTTTGGAATAGTCAGAGTTTTGGAATAAGAATAATGCCTCACAATAAAAGCTCT 1387
||||||||||||||||| | |||||| | |||||| | || || || |
Sbjct 1225 TGATGGTTTTGGAATAGTGATAGTTTT----T--GAATAA-G------AA-CAACGC-C- 1268
Query 1388 TGCGGTCTTCTTGGATCCAATCTTAAAGGTTCAAGAAACTCATCTCCTTTAGGTAAAATC 1447
| | | | || || | ||||||||||||||||||||||||| |||||||||||
Sbjct 1269 T-C-G----C---AATAAAAGC-TAAAGGTTCAAGAAACTCATCTCCTCTAGGTAAAATC 1318
Query 1448 TTCGATTGTTTTATCGTTCCATCGAACCACTTTGTTCTTAGATACAAGAACGTTTATGAT 1507
|||||||||||||||||||| ||||||||| ||||||||||||| ||||| ||||||||
Sbjct 1319 TTCGATTGTTTTATCGTTCCGTCGAACCACACTGTTCTTAGATACGAGAACATTTATGAT 1378
Query 1508 TTATGTAGTTGGGCTATAAAAGTGAGAACAGAGCAATAATCTTGCAACATTTTTTCTCAT 1567
| |||| ||||| || |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1379 CTGTGTACTTGGGTTACAAAAGTGAGAACAGAGCAATAATCTTGCGTCATTTTTTCTCAT 1438
Query 1568 CTTCTTGGTGTGttttttttttGTTG 1593
||||||||| ||||||||||||||||
Sbjct 1439 CTTCTTGGTATGTTTTTTTTTTGTTG 1464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70466953250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5