BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22790.1
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932241 jgi|Araly1|932241|scaffold_400229.1 1308 0.0
> Ahg932241 jgi|Araly1|932241|scaffold_400229.1
Length=1010
Score = 1308 bits (708), Expect = 0.0
Identities = 897/985 (91%), Gaps = 26/985 (3%)
Strand=Plus/Plus
Query 1 ATGAATCATCGTCTCGCCGGAATAATTAGCCCACTTGGCCACATTACTACAGATCCAATT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGAATCATCGTCTCGCCGGAATAATTAGCCCACTTGGCCACATTACTACAGATCCAATT 80
Query 61 CGTTCCTCCTCCGTGAACCCTTCGTCTCCGGTTTACTACAAAACCATTGTTAACCATTTC 120
|| ||||||||||| || || ||||||||||||||||||||||||| ||||||||||
Sbjct 81 CGCTCCTCCTCCGTTAAGCCACCGTCTCCGGTTTACTACAAAACCATAATTAACCATTTG 140
Query 121 AAATCTCAAACCGGTAACCACGTTTCACCTGGGCTTACCAATCAAGAGATCTCAGCCGTT 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 AAATCTCAAACCGGTATCCACGTTTCACCTGGGCTTACCAATCAAGAGATCTCAGCCGTT 200
Query 181 GAATCCTCTCATGGTTTCTCTTTCCCTCTTGATCTCCGTTCGATTCTCCAAACCGGTCTT 240
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 201 GAATCCTCTCTTGGTTTCTCTTTCCCTCTTGATCTCCGTTCGATTCTTCAAACCGGTCTT 260
Query 241 CCGGTTGGTACCAATTTTCCCAATTGGCGAACCGGGTCGAACCGGAATAATCTTCTTCTC 300
|||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 261 CCGGTTAGTACCAATTTTCCCAATTGGCGAACCGGGTCGAACCGGAATCATCTCCTTCTC 320
Query 301 CCTCTTCTTAATCTGTCTCAACA-CGTCGTCAGAAATGGATTCTGGGTCGATTCTTGGGG 359
||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||
Sbjct 321 CCTCTTCTTAATCTGTCTCAA-ATCGTCGTCAGAAACGGATTCTGGGTCGATTCTTGGGG 379
Query 360 GATCCGACCCGGAAATGACGCGGAGGCTTTGTCACTCGTGAAGAAATTGATTGAGATCGC 419
||||||||||||||| ||| |||||||||| | ||||||||||||||||| ||||||||
Sbjct 380 GATCCGACCCGGAAACGACTCGGAGGCTTTATTGCTCGTGAAGAAATTGATCGAGATCGC 439
Query 420 TCCGGTACTCGTCCCTGTATACGGCGATTTTTACGTCCCTTCGACGACGCCAAATTTGGC 479
|||||| |||||||| || | ||||||||| |||||||||||||||||||||||||||||
Sbjct 440 TCCGGTTCTCGTCCCCGTGTTCGGCGATTTCTACGTCCCTTCGACGACGCCAAATTTGGC 499
Query 480 GGGAAATCCAGTTTTCCAAATCGACGGCGACGGAGTTAGGGAATTGAGTTGCGACGTAGT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 500 GGGAAATCCAGTTTTCCAAATCGACGGCGACGGAGTTAGGGAATTGAGTTGCGACGTTGC 559
Query 540 CGGATTTCTCAAGGGAATCGGTCGATCAGAAACGCCGACGGAGGATCGACGACGAAGGAG 599
|||||| ||||||||| |||||||||| ||| || ||||||||||||| |||| | ||
Sbjct 560 CGGATTCCTCAAGGGACTCGGTCGATCGGAAGTGCAGACGGAGGATCGAAGACG--G-AG 616
Query 600 ACGACCACGGAGAGTGGAGTTTTGGAGCGATGTGGCGGAGGGATGGAGATTTGTGGTGGC 659
|||| | | || ||||||| ||||| |||||||||||| || ||||||||||||||||
Sbjct 617 ACGA--A-G-AG--TGGAGTTCTGGAGTGATGTGGCGGAGCGAGGGAGATTTGTGGTGGC 670
Query 660 GCGTGATTAC-ACGCGCGATTGGTGGAGCGCGTTAGGTTTTGAGGGGTTAACGGCGTGTT 718
||||||| || ||||||||||||||||| ||||| ||||| |||||||||| || ||||
Sbjct 671 GCGTGAT-ACCACGCGCGATTGGTGGAGTGCGTTGGGTTTAGAGGGGTTAAGGGATTGTT 729
Query 719 TGGACGACGCGTTTTGGAAGCTGAGGGAAGCAGGATGGACGGAAGATGATGTTCGCGATA 778
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 730 TGGACGACGCGTTTTGGAAGCTGAGGGAAGGAGGATGGACGGAAGATGAGGTTCGCGATA 789
Query 779 TGATGATGATGGACAGCGTAGATCAAAACACGTG-TATCC-AGCAGCAAACGCAAACGCA 836
|||||||||||||| | ||||||| | ||||||| | | | | |||| |||||||||
Sbjct 790 TGATGATGATGGACGGTGTAGATCGAGACACGTGGTGTACTA--AGCA---GCAAACGCA 844
Query 837 ATCGCGGGATGTGGTGTACGCGTTTGGCGATGAGG-GAATGAACGAAAGAGATAGA-GAC 894
||||||||||||||||||||||||||||| ||||| || || ||||| ||||| || |||
Sbjct 845 ATCGCGGGATGTGGTGTACGCGTTTGGCGGTGAGGAGA-TGGACGAAGGAGAT-GAAGAC 902
Query 895 ACGTGTACAGAGGACGAGGATCATCA-GAAAGGCGAAGTAACGACGTTGAGGCATTTGTT 953
|||||||| ||||| |||||||| || |||| ||||||| |||||||||||||||||| |
Sbjct 903 ACGTGTACGGAGGAAGAGGATCA-CAAGAAACGCGAAGTGACGACGTTGAGGCATTTGCT 961
Query 954 GCTTTATGATCGTTTGATGAGCTAA 978
||||| |||||||||||||||||||
Sbjct 962 GCTTTTTGATCGTTTGATGAGCTAA 986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36331139901
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5