BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22795.1
Length=2530
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481141 jgi|Araly1|481141|fgenesh2_kg.4__201__AT2G22795.1 1502 0.0
> Ahg481141 jgi|Araly1|481141|fgenesh2_kg.4__201__AT2G22795.1
Length=2278
Score = 1502 bits (813), Expect = 0.0
Identities = 1407/1671 (84%), Gaps = 131/1671 (8%)
Strand=Plus/Plus
Query 899 gaagagagtagggagaagagtggtaccgaagagagtgaggttgaagagaagaaagacaat 958
|||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 626 GAAGAGAGTAAAGAAAAGAGTGGTACTGAAGAGAGTGAGGTTGAGGAGAAGAAAGACAAT 685
Query 959 ggtagtagcgaagagagtgaggttgaagagaagaaagaaaacagaggt----at-aga-c 1012
||| ||| |||||||||||||||||||||||||||||||||| ||||| || ||| |
Sbjct 686 GGTGGTACCGAAGAGAGTGAGGTTGAAGAGAAGAAAGAAAACGGAGGTACAGATGAGAGC 745
Query 1013 ga-gagcg---ag-g-aga------gta---aagagaaagatatagatgagaaagcgaat 1057
|| ||| | || | ||| ||| ||||||| ||| |||||||||||||||||
Sbjct 746 GAGGAGAGTAAAGAGAAGAGTGGTGGTACGGAAGAGAAGGATGTAGATGAGAAAGCGAAT 805
Query 1058 attgaagaggcaagagagaaTAATTACAAGGGAGATGATGCTTCTAGTGAGGTAGTTCAT 1117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 806 ATTGAAGAGGCAAGAGAGAATAATTACAAGGGAGATGATGCTTCTAGTGAGGTAGTCCAT 865
Query 1118 GAGTCTGAGGAGAAGACTAGTGAGTCGGAGAACAGTGAGAAAGTGGAAGACAAGTCGGGT 1177
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 866 GAGTCTGAGGAGAAGACTAGTGAGTCGGAGAACGGTGAGAAAGTGGAAGACAAGTCGGGT 925
Query 1178 ATAAAGACTGAAGAAGTGGAAGATTCTGTTATCAAGAGTGTTTTGCCTAACACAACAGAT 1237
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 926 ATAAAGACTGAAGAAGTGGAGGATTCTGTTATCAAGAGTGTTTTGCCTAACACAACCGAT 985
Query 1238 AATGGGGAAAGCAGTAGTGATGAGAAGAGTACTGGTTCGTCTTCAGGTCATGAATCGGAT 1297
|||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||
Sbjct 986 AATGGGGAAAGCAGTAGTGATGAGAAGA---CTGGTTCATCCTCAGGTCATGAATCGGAT 1042
Query 1298 TCCTTGGAGGGAATAAAATCTGAGGGTGAATCTATGGAGAAGAATGAGTTGTTGGAGAAG 1357
|| | ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 TCGTCGGAAGGAATCAAATCTGAGGGTGAATCTATGGAGAAGAATGAGTTGTTGGAGAAG 1102
Query 1358 GAGTTCAATGATTCTAACGGTGAGTCCTCTGTGACCGGTAAATCCACGGGTTCTGGAGAC 1417
|||||| ||||||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 1103 GAGTTCCATGATTCTAACGGTGAGTCTTCTGTGACCGGGAAATCAACGGGTTCTGGAGAC 1162
Query 1418 GGAGGTTCTCAAGAAACTTCTGAAGTGTCATCTCAAGAGGAGAGTAAAGGCAAGGAAAGT 1477
||| |||||||||||||| ||| | || |||| |||| || | | | || ||
Sbjct 1163 GGAAGTTCTCAAGAAACTAG-GAAA-G--ATG--AAGATGAGA--AA-G--A-G-AAGGT 1209
Query 1478 GAGACAAAGGATAAGGAAGAATCTTCGTCTCAAGAGGAAAGTAAAGACAGAG-AAACTGA 1536
||| | | | ||| | | | |||||||||||||||||||||| || ||| |||
Sbjct 1210 -AGA-ATCTTCT--G-AAG--TGT-CATCTCAAGAGGAAAGTAAAGACA-AGGAAAGTGA 1260
Query 1537 GACAAAGGAGAAAGAAGAGTCTTCATCGCAAGAGGAAACTATGGACAAAGAAACCGA-AG 1595
|||||||||||| ||||| ||||| || |||||||||| || || |||||||| || |
Sbjct 1261 GACAAAGGAGAAGGAAGAATCTTCGTCTCAAGAGGAAAGTAAAGATAAAGAAACTGAGA- 1319
Query 1596 CAAAGGAGAAAGTAGAGTCTTCTTCTCAAGAGAAAAACGAA-GACAAGGAAACTGA-G-A 1652
|||||||||||| ||||||||| || |||||| ||| | || ||||| ||||| || | |
Sbjct 1320 CAAAGGAGAAAGAAGAGTCTTCGTCGCAAGAGGAAA-CTAAAGACAAAGAAACCGAAGCA 1378
Query 1653 AA--ATA--GA-G--TCTTCGTTC-CTagaggaaa-ctaaagaaaaagaagac-gagaca 1702
|| | | || | ||||| | | | |||| ||| | || || || ||| || |||||
Sbjct 1379 AAGGAGAAAGAAGAGTCTTCAT-CACAAGAGAAAAACGAA-GACAAGGAA-ACTGAGACC 1435
Query 1703 aaggagaaagaaga---g-----tcttcttcccaagagaaaaccgaagaaaaggaaaCCG 1754
|||||||||||||| | ||||| ||||||||| |||| ||||||| |||||||
Sbjct 1436 AAGGAGAAAGAAGAAAAGCCGAGTCTTCGTCCCAAGAGGAAACTAAAGAAAAAGAAACCG 1495
Query 1755 AGACAAAGGATAACGAAGAGTCTTCGTCTCAAGAGGAAACTaaagacaaagagaat-gag 1813
|||| ||||| || ||||||||||| || |||||| ||||| ||||||| || || |||
Sbjct 1496 AGACGAAGGAGAAAGAAGAGTCTTCTTCCCAAGAGAAAACTGAAGACAAGGA-AACCGAG 1554
Query 1814 a-agattgagaaagaagaggcttcatcgcaagaagaatctaaaga-aaatgaaa-CTgag 1870
| | | ||||| |||||| |||| || ||||| ||| ||||||| ||| |||| | |||
Sbjct 1555 ACAAAG-GAGAACGAAGAGTCTTCGTCTCAAGAGGAAACTAAAGAGAAA-GAAAAC-GAG 1611
Query 1871 acaaag-gagaaagaagagtcttcttctcaagaggaaactaaagagaaagaaaacgagaa 1929
| | | ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1612 A-AGATTGAGAAAGAAGAGTCTTCGTCTCAAGAGGAAACTAAAGAGAAAGAAAACGAGAA 1670
Query 1930 gattgagaaagaagagtctgcaccgcaagaggaaactaaagag-aaagaaaacgagaaga 1988
||||||||||||||||||| || | |||||||||||||||| | ||||||||| |||| |
Sbjct 1671 GATTGAGAAAGAAGAGTCTTCATCTCAAGAGGAAACTAAAG-GCAAAGAAAACAAGAACA 1729
Query 1989 ttgaaaaagaag-agt-ct-gca--tcgc-aa-gaggaaact--a----aagag-aa-a- 2032
|||| ||||||| | | | | | | || || || || | ||||| || |
Sbjct 1730 TTGAGAAAGAAGGAACACGAGAAGATTGAGAAAGAAGAGTCTGCATCGCAAGAGGAAGAC 1789
Query 2033 ---gaaaccgagacaaaagagaaagaagagTCATCGTCCAACGAATCACAGGAAAATGTA 2089
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
Sbjct 1790 AAAGAAACCGAGACAAAAGAGAAAGAAGAGTCATCGTCCAACGATTCACAAGAAAATGGA 1849
Query 2090 AACACCGAGAGTGAGAAGAAAGAACAGGTTGAGGAAAACGAGAAGAAGACTGACGAAGAC 2149
| | |||| ||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 1850 AGTAGTGAGAATGAAAAGAAGGAACAGGT---------CGAGAAGAAGACTGACGAAGAC 1900
Query 2150 ACAAGTGAATCTAGCAAAGAAAATAGCGTTTCAGATACTGAACAAAAGCAATCAGAGGAA 2209
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1901 ACAAGTGAATCGAGCAAAGAAAATAGCAACTCAGATACTGAACAAAAGCAATCAGAGGAA 1960
Query 2210 ACATCAGAGA----AG-GA--G-G-AAAGCAACAAGAATGGTGAAACAGAGGTAACTCAA 2260
|||||||| | || || | | |||||||||||||||||||||||||||||||||||
Sbjct 1961 ACATCAGAAACTTCAGAGAAAGAGGAAAGCAACAAGAATGGTGAAACAGAGGTAACTCAA 2020
Query 2261 GAACAATCTGATTCTTCTTCGGATACTAATCTTCCTCAAGAAGTCAAAGATGTTCGCACC 2320
||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 2021 GAACATTCTGATTCTTCTTCAAATACTAATCTTCCTCAAGAAGTAAAAGATGTTCGCACC 2080
Query 2321 GATCTTGAAACTTTACCGGATTCTGGAAATGGAGGGAGCAATGAGAGTGTTGCGGCTGAG 2380
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 2081 GATCTTGAAACTTTGCCTGACTCTGGAAATGGAGGGAGCAATGAGAGTGTTGCGGCTGAG 2140
Query 2381 TAAATCTTACAATGGTTGCTCAAATTCTCTCATTCGATGTTGTTT-AGTAGAGAGTTTT- 2438
||||||| | |||||| ||||||| ||||||| |||||||||| |||||||||||||
Sbjct 2141 TAAATCTCCCC-TGGTTGATCAAATTTTCTCATTTGATGTTGTTTTAGTAGAGAGTTTTT 2199
Query 2439 -----ACGAATTCAATTTGTGTCATTGTAATTTGTTGTAATCttttttttt 2484
||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2200 TTTTTACGAATTGAATTTGTGTCATTGTAATTTGTTGTAATCTTTTTTTTT 2250
Score = 789 bits (427), Expect = 0.0
Identities = 504/538 (94%), Gaps = 18/538 (3%)
Strand=Plus/Plus
Query 3 TTTGATTCCAATTGAAGGGACGCACGATTTTAATGGCAGTTTAACGGGAACACTtctctc 62
|||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||
Sbjct 1 TTTGATTCCAATTGAAGGGACGCACGATTTTAGTGGCAGTTTAACGGGAACAC-T-ACT- 57
Query 63 tctctctctAGATCCCAAAACTCAAAATCGTTCCTTTTTGCAAAAATTGTTCATCTTTCT 122
|||||||||||||||||||| |||||||| ||||||| | |||||||| |||||||||||
Sbjct 58 TCTCTCTCTAGATCCCAAAAATCAAAATCTTTCCTTTAT-CAAAAATTCTTCATCTTTCT 116
Query 123 GTTTTCCCAGAAATAAAAAAGCTCTCTTGATTTGCCTTTCCTGGTATTGAGGAAATATGT 182
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 117 GTTTTCCCAGAAATAAAAAAGCTCTCTTGATTTGCCTTTCCTGGTTTTGAGGAAGTATGT 176
Query 183 TTAGATCATCACCGAGAAGAGGACAGAGATCAAAGGGTTTCAAGGTGAAGCATTGTATTC 242
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 TTAGATCATCACCAAGAAGAGGACAGAGATCAAAGGGTTTCAAGGTGAAGCATTGTATTC 236
Query 243 AATTGACTTTGTTGCTTAGTGTTGGGATATGGTTGCTTTATCAAGTTAAGCATTCTCATG 302
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 237 AATTGACTTTGTTACTTAGTGTTGGAATATGGTTGCTTTATCAAGTTAAGCATTCTCATG 296
Query 303 AGAAGAAAGCTCAGTTTGAGGAAAGTGCAAAGATTGTTGTTGGTGGTG-T--TG---ATA 356
|||||||| ||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 297 AGAAGAAATCTCAGTTTGAGGAAAGTGCAAAGATTGTTGTTGGTGGTGGTGGTGGTGATA 356
Query 357 AAGTTGTCAAGCTTGGTAGGAAAGATCTTATCCCTCGTGTTGTTGAGGTAGATGAAGCTG 416
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 357 AAGTTGTCAAGCTTGGTAGGAAAGATCTTATCCCTCGTGTTGTGGA---AGATGAAGCTG 413
Query 417 AGGATGAAGGAAGTAAGAATGTTGTTGAGAGTTTTAATT-CGGGTAATGGTGATGATAAG 475
|||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 414 AGGATGAAGGAAGTAAGAATGTTGTTGAGAGTTTTAATGGCGG-T---GGTGATGATAAG 469
Query 476 GAGAATGAGATTGTTGAAGGAGGTGAAGAGAATAAGGAGAAGGAAAGTGAAGGGATTG 533
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 470 GAGAATGAGATTGTAGAAGGAGGTGAAGAGAGTAAGGAGAAGGAAAGTGAAGGGATTG 527
Score = 640 bits (346), Expect = 0.0
Identities = 478/537 (89%), Gaps = 27/537 (5%)
Strand=Plus/Plus
Query 1429 AGAAACTTCTGAAGTGTCATCTCAAGAGGAGAGTAAAGGCAAGGAAAGTGAGACAAAGGA 1488
|||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 1210 AGAATCTTCTGAAGTGTCATCTCAAGAGGAAAGTAAAGACAAGGAAAGTGAGACAAAGGA 1269
Query 1489 TAAGGAAGAATCTTCGTCTCAAGAGGAAAGTAAAGACAGAGAAACTGAGACAAAGGAGAA 1548
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1270 GAAGGAAGAATCTTCGTCTCAAGAGGAAAGTAAAGATAAAGAAACTGAGACAAAGGAGAA 1329
Query 1549 AGAAGAGTCTTCATCGCAAGAGGAAACTATGGACAAAGAAACCGAAGCAAAGGAGAAAGT 1608
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1330 AGAAGAGTCTTCGTCGCAAGAGGAAACTAAAGACAAAGAAACCGAAGCAAAGGAGAAAGA 1389
Query 1609 AGAGTCTTCTTCTCAAGAGAAAAACGAAGACAAGGAAACT-----------G--AGAA-A 1654
||||||||| || ||||||||||||||||||||||||||| | |||| |
Sbjct 1390 AGAGTCTTCATCACAAGAGAAAAACGAAGACAAGGAAACTGAGACCAAGGAGAAAGAAGA 1449
Query 1655 ATA---GAGTCTTCGTTCCTagaggaaactaaagaaaaagaaga-cgagacaaaggagaa 1710
| | |||||||||| || |||||||||||||||||||||| | |||||| ||||||||
Sbjct 1450 AAAGCCGAGTCTTCGTCCCAAGAGGAAACTAAAGAAAAAGAA-ACCGAGACGAAGGAGAA 1508
Query 1711 agaagagtcttcttcccaagagaaaaccgaagaaaaggaaaCCGAGACAAAGGATAACGA 1770
||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 1509 AGAAGAGTCTTCTTCCCAAGAGAAAACTGAAGACAAGGAAACCGAGACAAAGGAGAACGA 1568
Query 1771 AGAGTCTTCGTCTCAAGAGGAAACTaaagacaaagagaatgagaagattgagaaagaaga 1830
|||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||
Sbjct 1569 AGAGTCTTCGTCTCAAGAGGAAACTAAAGAGAAAGAAAACGAGAAGATTGAGAAAGAAGA 1628
Query 1831 ggcttcatcgcaagaagaatctaaaga-aaatgaaa-CTgagacaaag-gagaaagaaga 1887
| |||| || ||||| ||| ||||||| ||| |||| | |||| | | |||||||||||
Sbjct 1629 GTCTTCGTCTCAAGAGGAAACTAAAGAGAAA-GAAAAC-GAGA-AGATTGAGAAAGAAGA 1685
Query 1888 gtcttcttctcaagaggaaactaaagag-aaagaaaacgagaagattgagaaagaag 1943
|||||| ||||||||||||||||||| | ||||||||| |||| |||||||||||||
Sbjct 1686 GTCTTCATCTCAAGAGGAAACTAAAG-GCAAAGAAAACAAGAACATTGAGAAAGAAG 1741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95377973480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5