BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22800.1
Length=1170
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481142 jgi|Araly1|481142|fgenesh2_kg.4__202__AT2G22800.1 1779 0.0
Ahg490837 jgi|Araly1|490837|fgenesh2_kg.7__270__AT4G37790.1 449 2e-125
> Ahg481142 jgi|Araly1|481142|fgenesh2_kg.4__202__AT2G22800.1
Length=1159
Score = 1779 bits (963), Expect = 0.0
Identities = 1105/1171 (94%), Gaps = 20/1171 (2%)
Strand=Plus/Plus
Query 1 GGCTTCATCTCCTCCCATTATCTTCTAAACTCATTTCCTTTTCCTCTCGAAATCTCAAAG 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 GGCTTCATCTCCTCCCATTATCTTCTAAACTCATTTCTTTTTCCTCTCGAAATCTCAAAG 60
Query 61 ATAGATAAATTTTA-A-AGGCATAtttttttCATTTCGACTCAGATGGGTTTTGATGATA 118
|||||||||||||| | ||||||| |||||||| |||||||||||||||||||||||||
Sbjct 61 ATAGATAAATTTTACATAGGCATAATTTTTTCACTTCGACTCAGATGGGTTTTGATGATT 120
Query 119 CATGCAACACAGGTCTTGTTCTTGGATTAGGTCCCTCACCAATTCCAAATAATTACAATA 178
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 121 CATGCAACACAGGTCTTGTTCTTGGATTAGGTCTCTCACCAACTCCAAATAATTACAGTA 180
Query 179 GTACCATCAGACAATCCTCCGTTTACAAGCTCGAGCCGTCGTTGACTCTATGCCTCTCGG 238
|| ||||||||| |||| ||| || ||||||||||||||||||||||||| ||||||| |
Sbjct 181 GTGCCATCAGACGATCCCCCGGTTGCAAGCTCGAGCCGTCGTTGACTCTAAGCCTCTCCG 240
Query 239 GCGATCCCTCGGTTACCGTGGTGACCGGAGCTGACCAGCTATGCCGTCAGACGTCATCTC 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCGATCCCTCGGTTACCGTGGTGACCGGAGCTGACCAGCTATGCCGTCAGACGTCATCTC 300
Query 299 ACAGCGGAGTCTCTTCTTTCTCAAGCGGGAGGGTGGTGAAAagagagagagacggtggcg 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 301 ACAGCGGAGTCTCTTCTTTCTCAAGCGGGAGGGTGGTGAAAAGAGAGAGAGACGGTAGAG 360
Query 359 aagagtcgccggaggaggaagagatgacggagagagTTATAAGTGATTACCATGAAGATG 418
|||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||
Sbjct 361 AAGAGTCGCCGGAGGAGGAAGAGACGACGGAGAGAGTTATAAATGATTACAATGAAGATG 420
Query 419 AAGAAGGTATTAGTGCTAGaaaaaaaCTTAGGCTTACGAAACAACAATCTGCTCTTCTTG 478
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 421 AAGAAGGTATTAGTGCTAGAAAAAAACTTAGGCTTACGAAAGAACAATCTGCTCTTCTTG 480
Query 479 AGGAAAGCTTCAAGGATCATAGCACCCTTAATCCCAAACAAAAGCAAGTTCTGGCTAGAC 538
|||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 481 AGGATAGCTTCAAGCATCATAGCACCCTTAATCCCAAGCAAAAGCAAGTTCTGGCTAGAC 540
Query 539 AGCTGAATCTAAGGCCTAGACAAGTTGAAGTATGGTTTCAAAATAGAAGAGCCAGGACAA 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGCTGAATCTAAGGCCTAGACAAGTTGAAGTATGGTTTCAAAATAGAAGAGCCAGGACAA 600
Query 599 AGCTGAAGCAAACAGAAGTAGATTGTGAGTTTTTGAAGAAGTGTTGTGAAACATTAGCAG 658
||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||
Sbjct 601 AGCTGAAGCAAACAGAAGTAGATTGTGAGTTTTTGAAAAAATGTTGTGAAACATTAACAG 660
Query 659 ATGAGAACATAAGACTTCAGAAAGAGATTCAAGAACTCAAAACCCTAAAATTGACTCAGC 718
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 661 ATGAGAACATGAGACTTCAGAAAGAGATTCAAGAACTCAAAACCCTAAAATTGACTCATC 720
Query 719 --CCTTTT-ACATGCACATGCCTGCATCGACTCTAACGAAGTGTCCTTCTTGTGAGAGAA 775
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 721 AGCCTTTTTACATGCACATGCCTGCATCGACTCTAACGATGTGTCCTTCTTGTGAGATAA 780
Query 776 TCGGCGGCGGCGGCGGGGGTAATGGAGGAGGAGGTGGCGGCAGCGGGGCTACCGCGGTGA 835
|||||| ||| ||||| |||||||||||| ||||||||||| |||||||||||||
Sbjct 781 TCGGCGCCGGTGGCGG---TAATGGAGGAGG---TGGCGGCAGCGTGGCTACCGCGGTGG 834
Query 836 TTGTAGATGGAAGTACGGCCAAAGGAGCTTTCTCTATCTCCTCAAAGCCTCACTTCTTCA 895
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 835 TTGTGGATGGAAGTACGGCCAAAGGAGCTTTCTCCATCTCCTCAAAGCCTCACTTCTTCA 894
Query 896 ACCCTTTTACTAACCCATCTGCAGCTTGTTGAATAGTAGTAATTCGTTTAAT-TTTATTA 954
||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 895 ACCCTTTTACTAATCCATCTGCAGCTTGTTGAATAGTAGTAATTCGTTTTTTATTTATTA 954
Query 955 CTTAAAATATTAATTTTCttttttttttGGGTGGCATTTTAACTAGTAGGAAGAACACAA 1014
||||||||||||| ||| ||||| || ||||| |||||||||||||||||||||||
Sbjct 955 CTTAAAATATTAAATTT-TTTTT-----GG-TGGCAATTTAACTAGTAGGAAGAACACAA 1007
Query 1015 AAACTATGTTAGAAAGGGTAAGATGCGTATAGATGGTCTCTTCTACAATTCCCACTTTGT 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 AAACTATGTTAGAAAGGGTAAGATGCGTATAGATGGTCTCTTCTACAATTCCCACTTTGT 1067
Query 1075 TTTTCAGTGGGATTGCTGGTTTGAGAAAAAGAATAGTTTGTAATTATTATTTTATTTGTA 1134
||||||||||||||| || |||| |||||| ||||||||||||||||||||||||||||
Sbjct 1068 TTTTCAGTGGGATTGTTGATTTGGGAAAAATAATAGTTTGTAATTATTATTTTATTTGTC 1127
Query 1135 GAAAAA-GGTAAAATAGTCTTCACTTTAATT 1164
|||||| ||||||||||||||||||||||||
Sbjct 1128 GAAAAAAGGTAAAATAGTCTTCACTTTAATT 1158
> Ahg490837 jgi|Araly1|490837|fgenesh2_kg.7__270__AT4G37790.1
Length=1150
Score = 449 bits (243), Expect = 2e-125
Identities = 678/877 (77%), Gaps = 73/877 (8%)
Strand=Plus/Plus
Query 99 TCAGATGGGTTTTGATGATACATGCAACACAGGTCTTGTTCTTGGATTAGGTCC-CTCAC 157
||| |||||| |||||||| ||||||||||||||||||||||||| ||||| || |||||
Sbjct 123 TCAAATGGGTCTTGATGATTCATGCAACACAGGTCTTGTTCTTGGTTTAGG-CCTCTCAC 181
Query 158 CAATTCCAAATAATTACAAT-AGTACCATC-AG--A--------CA----A-TCCTCCGT 200
||| || |||||||||||| | | ||||| || | || | || ||||
Sbjct 182 CAACGCCTAATAATTACAATCA-TGCCATCAAGAAATCTTCCGCCACCGTAGACCACCGT 240
Query 201 -TTA-CAAGCTCGAGCCGTCGTTGACTCTATGCCTCTC-GG-GCGA-TCCCTCGGTTACC 255
| | || |||||| ||||||||||||||| ||||||| || | || | | | |||
Sbjct 241 CTCATCAGGCTCGATCCGTCGTTGACTCTAAGCCTCTCTGGTGAGAGTTAC-AAG--ACC 297
Query 256 --G--TGGTGACCGGAG-C--TGACCAGCTATGCCGTCAGACGTCATCTCACAGCGG-AG 307
| || || |||| | | ||||| | ||||| ||||| || ||||||||||| |
Sbjct 298 AAGACTGCTG-CCGGCGCCGGGGACCAAATTTGCCGACAGACTTCGTCTCACAGCGGCA- 355
Query 308 TCTCTTCTTTCTCAAGCGGGAGGGT--GGTGA-AAagagagagagacggtggcga-agag 363
|||| |||||||| ||||| ||||| | || ||||||| | |||| ||||| |||
Sbjct 356 TCTCATCTTTCTCGAGCGGAAGGGTAAAGAGAGAAAGAGAAATCTACGGCGGCGACGGAG 415
Query 364 tcgccggaggaggaagagatgacggagaga---gT-T-AT--A-AGTGA-T--T-ACCAT 411
| |||| ||| |||| |||||||||| || | | | ||||| | | | |||
Sbjct 416 AAG-AAGAGGCGGAGGAGACGACGGAGAGAGTGGTGTGTTCGAGAGTGAGTGATGATCAT 474
Query 412 GAAGATGAAGAAGGTATTAGTGCTAGaaaaaaaCTTAGGCTTACGAAACAACAATCTGCT 471
||||||||||||||| |||||||| | ||||| ||||| || || |||||||||||||||
Sbjct 475 GAAGATGAAGAAGGTGTTAGTGCTCGTAAAAAGCTTAGACTCACTAAACAACAATCTGCT 534
Query 472 CTTCTTGAGGAAAGCTTCAAGGATCATAGCACCCTTAATCCCAAACAAAAGCAAGTTCTG 531
|||| || || |||||||| ||||||||||||||||||||| ||||| ||| |||
Sbjct 535 GTTCTCGAAGATAGCTTCAAACTTCATAGCACCCTTAATCCCAAGCAAAAACAAAATCTT 594
Query 532 GCTAGACAGCTGAATCTAAGGCCTAGACAAGTTGAAGTATGGTTTCAAAATAGAAGAGCC 591
|| ||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||
Sbjct 595 GCGAGACAGCTGAATCTAAGGCCTAGACAAGTTGAAGTGTGGTTCCAAAACAGGAGAGCT 654
Query 592 AGGACAAAGCTGAAGCAAACAGAAGTAGATTGTGAGTTTTTGAAGAAGTGTTGTGAAACA 651
|||||||| || |||||||||||||| |||||||||||||||||||| || ||||| ||
Sbjct 655 AGGACAAAACTAAAGCAAACAGAAGTTGATTGTGAGTTTTTGAAGAAATGCTGTGAGACT 714
Query 652 TTAGCAGATGAGAACATAAGACTTCAGAAAGAGATTCAAGAACTCAAAACCCTAAAATTG 711
||| | |||||||| | ||| ||||| |||||| ||||||| || || | ||||| ||
Sbjct 715 TTAACGGATGAGAATAGAAGGCTTCAAAAAGAGCTTCAAGACCTTAAGGCTTTAAAAATG 774
Query 712 ACTCAGCCCTTTTACATGCACATGCCTGCATCGACTCTAACGAAGTGTCCTTCTTGTGAG 771
|||| || ||||||||||||||||| || ||||| | || | ||| ||||||||||||
Sbjct 775 TCTCAACCTTTTTACATGCACATGCCGGCGGCGACTTTGACTATGTGCCCTTCTTGTGAG 834
Query 772 AGAATCGGCGGCGGCGGCGGGGGTAATGGAGGAGGAGGTGGCGGCAGCGGGGCTACCGCG 831
||| ||||||| || || || ||| | ||||||| |||||| || | ||| |||
Sbjct 835 AGACTCGGCGGTGGTGGTGGAGGT---GCCGGAGGAGTTGGCGG-AG-G----TACGGCG 885
Query 832 GTGATTGTAGATGGAAGTA-CGGCCAAAGGAGCTTTCTCTATC-TCCTCAAAGCCTCACT 889
| | ||| | |||| | | |||| |||||||||||||| ||| || ||||||||| |
Sbjct 886 GCGGTTG-A--TGGA-GAAACGGCGAAAGGAGCTTTCTCCATCGTCA-CAAAGCCTCGTT 940
Query 890 TCT-TCAACCCTTTTACTAACCCATCTGCAGCTTGTT 925
||| | |||||||| ||||| || |||||||| ||||
Sbjct 941 TCTAT-AACCCTTTCACTAATCCTTCTGCAGCATGTT 976
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43650739965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5