BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22807.1
Length=282
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320116 jgi|Araly1|320116|fgenesh1_pm.C_scaffold_4000173 392 6e-109
> Ahg320116 jgi|Araly1|320116|fgenesh1_pm.C_scaffold_4000173
Length=273
Score = 392 bits (212), Expect = 6e-109
Identities = 248/265 (94%), Gaps = 3/265 (1%)
Strand=Plus/Plus
Query 21 AGCTACGAATGATTTTGGTTTCATCACTTGCTTGGTGATTTTCTTGGTGTTAGCAGGAAT 80
|||| | |||||||| ||||||||||||||||||||||||||||||||| || |||||||
Sbjct 9 AGCTGCAAATGATTTCGGTTTCATCACTTGCTTGGTGATTTTCTTGGTGCTAACAGGAAT 68
Query 81 ATCAAATGGAATGAGAATGACTCAGAAGGTGTCGTGTATAGAAGGTCGAACCTTATGGGC 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 ATCAAATGGAATGAGAATGACTCAGAAGGTGTCGTGTATAGAAGGTCGAACCTTATGGGC 128
Query 141 GAGGC--C-TCCTAAGtttttttATTGTAGTTCTACTCTATGTGAAGATAATTGCATTAA 197
||||| | || ||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 129 GAGGCGGCATCTTAAGTTTTTATATTGTAGTAGTACTCTATGTGAAGATAATTGCATTAA 188
Query 198 TACTGGTGCTTATAGAGGCGGCACATGTGACATGGAGGACGAAGTGGCAATATGCAGATG 257
|||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 189 TACTGGTGCTTATAGAAGCGGCACATGTGACATTGAGAACGAAGTGGCAATATGCAGATG 248
Query 258 TCATCGTTGTAAAAAGATAATATAG 282
|||||||||||||| ||| ||||||
Sbjct 249 TCATCGTTGTAAAATGATGATATAG 273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9844141962
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5