BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22810.1
Length=1425
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343837 jgi|Araly1|343837|fgenesh1_pg.C_scaffold_4000179 2294 0.0
Ahg332796 jgi|Araly1|332796|fgenesh1_pm.C_scaffold_8002139 536 2e-151
> Ahg343837 jgi|Araly1|343837|fgenesh1_pg.C_scaffold_4000179
Length=1467
Score = 2294 bits (1242), Expect = 0.0
Identities = 1361/1420 (96%), Gaps = 2/1420 (0%)
Strand=Plus/Plus
Query 1 ATGGTTCAATTGTCAAGAAAAGCTACATGCAACAGCCATGGCCAAGTCTCTTCGTATTTC 60
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATGGTTCTATTGTCAAGAAAAGCTACATGCAACAGCCATGGCCAAGACTCTTCGTATTTC 60
Query 61 CTTGGTTGGGAAGAGTACGAGAAGAATCCTTACGACGTTACCAAGAACCCTCAAGGCATT 120
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 61 CTTGGTTGGGAAGAGTACGAGAAGAATCCTTACGACGTTATGAAGAACCCTCACGGCATT 120
Query 121 ATCCAGATGGGTCTTGCGGAAAATCAGCTATGCTTTGATCTACTAGAGTCATGGCTTGCA 180
||||| ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 121 ATCCAAATGGGTCTTGCTGAAAATCAGTTATGCATTGATCTACTAGAGTCATGGCTTGCA 180
Query 181 CAAAACACAGACGCAGCCTGTTTCAAGAGAGATGGCCAGTCTGTTTTCCGGGAACTCGCT 240
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 181 CAAAACACAGACGCAGCCTGTTTCAAGAGAGCTGGCCAGTCTATTTTCCGGGAACTCGCT 240
Query 241 CTCTTTCAAGACTACCATGGCCTCTCTTCCTTCAAAAATGCCTTTGCTGATTTCATGTCA 300
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 241 CTCTTTCAAGACTACCATGGCCTCTCTTCCTTCAAAAATGCCTTGGCTGATTACATGTCA 300
Query 301 GAAAATAGAGGAAATCGAGTTTCTTTTGATTCAAACAACCTTGTGCTCACTGCTGGAGCC 360
|||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 301 GAAAATAGAGGAAACCGAGTTTCTTATGATTCGAACAACCTTGTGCTCACTGCTGGAGCC 360
Query 361 ACTTCCGCAAACGAGACTCTAATGTTTTGTCTTGCAGATCCCGGTGACGCTTTCTTGCTT 420
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 ACTTCCGCAAACGAAACTCTAATGTTTTGTCTTGCAGATCCCGACGACGCTTTCTTGCTT 420
Query 421 CCCACGCCATATTATCCAGGGTTTGATAGGGATCTAAAATGGCGAACCGGGGTTGAGATT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCCACGCCATATTATCCAGGGTTTGATAGGGATCTAAAATGGCGAACCGGGGTTGAGATT 480
Query 481 GTACCAATCCAAAGCTCAAGTACTAACGGGTTTCGCATAACGAAACTTGCACTCGAAGAA 540
|||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 481 GTACCAATCCAATGCTCAAGTACTAACGGGTTTTGCATAACGAAACTTACACTCGAAGAA 540
Query 541 GCCTACGAGCAAGCCAAGAAGCTTGACCTAAACGTCAAAGGAATACTCATCACCAACCCA 600
|||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||
Sbjct 541 GCCTACGAGCAAGCCAAGAAGCTTAACCTAAACGTCAAAGGAATACTTATTACCAACCCA 600
Query 601 TCTAACCCTTTGGGTACGACAACAACCCAAACCGAACTCAACATTCTATTTGATTTCATC 660
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCTAACCCTTTGGGCACGACAACAACCCAAACCGAACTCAACATTCTATTTGATTTCATC 660
Query 661 ACCAAGAATAAGAATATACATTTAGTAAGTGACGAGATATATTCGGGCACAGTATTCAAC 720
|| | ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 661 ACTATGAATAAGAATATACATTTAGTAAGTGACGAGATATATTCAGGCACAATATTCAAC 720
Query 721 TCTTCAGAATTCATCAGCGTCATGGAGATTCTAAAAAATAATCAACTCGAAAACACCGAT 780
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TCTTCAGAATTCGTCAGCGTCATGGAGATTCTAAAAAATAATCAACTCGAAAACACCGAT 780
Query 781 GTTTTGAACCGAGTCCACATTGTTTGTAGCTTATCTAAAGATCTAGGCCTCCCTGGTTTT 840
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 781 GTTTTGAACCGTGTCCACATTGTTTATAGCTTATCTAAAGATCTAGGCCTCCCTGGTTTT 840
Query 841 AGAGTTGGAGCCATTTACTCCAATGACAAAGATGTCATCTCTGCCGCTACAAAAATGTCA 900
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 841 AGAGTTGGAGCCATTTACTCCAATGACAAAGATGTCATCTCTACCGCTACAAAAATGTCG 900
Query 901 AGTTTCGGCCTTGTCTCCTCCCAGACACAATACCTACTATCCTCATTATTATCTGACAAG 960
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 901 AGTTTCGGCCTTGTCTCCTCCCAAACACAATACCTACTATCCTCATTATTATCTGACAAG 960
Query 961 AAGTTCACTAAGAACTACCTTAGAGAGAACCAAAAACGGCTCAAGAACAGACAGAGAAAG 1020
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 961 AAGTTCACTAAGAACTACCTTCGAGAGAACCAAAAACGGCTCAAGAACAGACAAAGAAAG 1020
Query 1021 CTCGTGTTGGGTCTAGAGGCCATCGGGATCAAATGTCTGAAGAGTAATGCGGGACTCTTT 1080
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1021 CTCGTGTTGGGTCTAGAGGCCATAGGGATCAAATGTCTGAAGAGTAATGCCGGACTCTTT 1080
Query 1081 TGTTGGGTCGACATGAGACCTCTCCTTAGATCTAAAACGTTCGAAGCGGAAATGGATCTT 1140
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1081 TGTTGGGTCGACATGAGACCTCTCCTTAGCTCTAAAACGTTCGAAGCGGAGATGGATCTT 1140
Query 1141 TGGAAGAAGATTGTTTACGAAGTGAAGCTCAACATCTCTCCTGGTTCGTCGTGCCATTGT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TGGAAGAAGATTGTTTACGAAGTGAAGCTCAACATCTCTCCTGGTTCGTCGTGCCATTGT 1200
Query 1201 GAAGAACCGGGTTGGTTTAGAGTTTGTTTCGCGAACATGATTGATGAGACATTAAAGCTT 1260
|||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||
Sbjct 1201 GAAGAACCGGGTTGGTTTAGAGTTTGTTTCACGAACATGAGTGAGGAGACATTAAAGCTT 1260
Query 1261 GCTTTAAAGAGATTGAAGATGTTGGTTGATGATGAAAACTCAA-GTAGAAGATGCCAAAA 1319
||||||||||||||||||| ||| |||||||||| |||||||| | || || ||||||||
Sbjct 1261 GCTTTAAAGAGATTGAAGAAGTTCGTTGATGATGGAAACTCAAAG-AGGAGTTGCCAAAA 1319
Query 1320 GAGTAAAAGCGAAAGACTAAACGGTTCGAGGAAGAAGACGATGTCAAATGTCTCTAACTG 1379
|||| ||||| ||| |||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1320 GAGTGAAAGCCAAAAACTAAAAGGTTTGAGGAAGAAGACGATGTCAAATGTCTCTAACTG 1379
Query 1380 GGTTTTCCGACTATCGTTTCACGACCGTGAGGCTGAGGAA 1419
|||||| ||||||||||||||||||||||||||||| |||
Sbjct 1380 GGTTTTTCGACTATCGTTTCACGACCGTGAGGCTGAAGAA 1419
> Ahg332796 jgi|Araly1|332796|fgenesh1_pm.C_scaffold_8002139
Length=1413
Score = 536 bits (290), Expect = 2e-151
Identities = 960/1272 (75%), Gaps = 91/1272 (7%)
Strand=Plus/Plus
Query 13 TCAAGAAAAGCT-ACATGCAACAGCCATGGCCAAGTCTCTTCGTATTTCCTT-GGTTGGG 70
|||| ||||| | ||| |||| | ||||| |||| ||| || || || ||| || ||||
Sbjct 13 TCAACAAAAG-TGACAAGCAATGGTCATGGACAAGACTCATCCTACTT-CTTGGGATGGG 70
Query 71 AAGAGTACGAGAAGAATCCTTACGACGTTACCAAGAACCCTCAA-GGCATTATCCAGATG 129
||||||||||||||||||||||||| | | |||||||||| || || || |||||||||
Sbjct 71 AAGAGTACGAGAAGAATCCTTACGATGAGATCAAGAACCCT-AATGGGATGATCCAGATG 129
Query 130 GGTCTTGCGGAAAATCAGCTATGCTTT-GATCTACTAGAGTCATGGCTT-GCACAA-AAC 186
|||||||| ||||| |||||||| ||| |||||| | ||||||||| || | || |||
Sbjct 130 GGTCTTGCCGAAAACCAGCTATG-TTTCGATCTAATCGAGTCATGG-TTAGTT-AAGAAC 186
Query 187 ACAGACGCAGCCT-GTTTCAAGAGAGAT-GGCCAGTCTGTTTTCCGGGAACTCGCTCTCT 244
|||| ||||| | || ||||||| || || || || ||||| | || || |||||||
Sbjct 187 CCAGATGCAGC-TAGTCTCAAGAG-GAACGGTCAATCCATTTTCAGAGAGCTTGCTCTCT 244
Query 245 TTCAAGACTACCATGGCCT-CTCTTCCTTCAAAAATGCCTTTG-CTGA-TTTCATGTCAG 301
|||||||||| |||||| | | || |||||||| || | || |||| ||| ||| ||
Sbjct 245 TTCAAGACTATCATGGCATGC-CTGAATTCAAAAAAGC-TATGGCTGAGTTT-ATGGAAG 301
Query 302 AAAATA-GAGGAAATCGAGTTTCTTTTGATTCAAACAACCTTGTGCTCA-CTGCTGGAGC 359
| | || ||||||| || || | || ||| |||| || |||| | | | ||||| |
Sbjct 302 AGA-TAAGAGGAAACCGTGTCACGTTCGATCCAAAAAATATTGTTTT-AGCCGCTGGTTC 359
Query 360 CACTTCCGCAAACGAGACTCTAATGTTTTGTCTTGCAGATCCCGGTGACGCTTTC-TTGC 418
|| || || ||||||||||| ||||||||||||||||| || ||||| |||||| ||
Sbjct 360 GACCTCTGCGAACGAGACTCTCATGTTTTGTCTTGCAGAGCCTGGTGATGCTTTCCTT-- 417
Query 419 TTCCC-ACGCCATATTATCCAGGGTTTGATAGGGATCTAAAATGGCGAACCGGGGTTGAG 477
|| || || || || ||||| || |||||||| ||||| |||||| ||||||| | |||
Sbjct 418 TTGCCTACTCCTTACTATCCTGGATTTGATAGAGATCTTAAATGGAGAACCGGAGCAGAG 477
Query 478 ATTGTACCAATCCAAAGCTCAAG-TACTAACGGGTTTCGCATAACGAAA-CTTGCACT-C 534
|| ||||| || || ||||||| | |||| || || | || ||| || | || || |
Sbjct 478 ATAGTACCCATTCACTGCTCAAGCT-CTAATGGCTTCCAAATCACGGAATCA-GCTCTGC 535
Query 535 GAAGAAGCCTACGAGCAAGCCAAGAAGCTTGACCT-AAACGTCAAAGGAATACTCATCAC 593
|| |||| ||| | |||||| |||| ||||| || ||| ||||||||| | || ||||
Sbjct 536 -AACAAGCTTACCAACAAGCCGAGAAACTTGATCTTAAA-GTCAAAGGAGTTCTTGTCAC 593
Query 594 CAACCCATCTAACCCT-TTGGGTAC-GACAACAACCCAAACC-GAACTCAACATTCTATT 650
|| ||||||||||| |||| || | | ||| | || || || ||| |||| |
Sbjct 594 GAATCCATCTAACCCACTTGGC-ACTG-CGTTGACC-AGACGTGAGCTTAACCTTCTCGT 650
Query 651 TGATTTCATCACCAAGAATAAGAATATACATTT-AGTAAGTGACGAGATATATTCGGGCA 709
||| |||||||| || || | | | ||| | | || | |||||||| ||||| ||||
Sbjct 651 TGACTTCATCACTTCCAAGAACA-T-T-CATCTCATTA-GCGACGAGATCTATTCAGGCA 706
Query 710 C-AGTATTCAACTCTTCAGA-A-TTCATCAGCGTCATGGA-GATTCTAAAAA-ATAATCA 764
| | | ||| | || | | | ||||| ||||| ||||| | | || ||| | || |
Sbjct 707 CTA-TGTTCGGGT-TTGA-ACAGTTCATAAGCGTAATGGATG-T-CTTGAAAGACAAGAA 761
Query 765 ACTCGAAAACACCGATGTTTTGAACCGAGTCCACATTGTTTGTAGC-TTATCTAAAGATC 823
||||||||||||||| |||| || ||||||||| | |||| |||| || || ||||||
Sbjct 762 ACTCGAAAACACCGAGGTTTCAAAACGAGTCCACGTCGTTTATAGCCTT-TCCAAAGATT 820
Query 824 TAGGCCTCCCTGGTTTTAGAGTTGGAGCCATTTACTCCAATGACA-AAGATG-TCATCTC 881
| || || |||||||| | || ||||| || |||||||| || | || ||| || | ||
Sbjct 821 TGGGACTTCCTGGTTTCCGTGTGGGAGCGATCTACTCCAACGA-AGAA-ATGATCGTTTC 878
Query 882 TGCCGCTACAAAAATGTCAAGTTTCGGCCTTGTCTCCTCCCAGACACAATACCTACTATC 941
|| |||||||||||||||||||| || ||||| || || |||||||||||||| || ||
Sbjct 879 GGCAGCTACAAAAATGTCAAGTTTTGGTCTTGTTTCTTCTCAGACACAATACCTTCTCTC 938
Query 942 CT-CATTATTATCTGACAAGAAGTTCACTAAG--AACTACCTTAGA-GAGAACCAAAAAC 997
| |||| | || |||||||||||||| ||| || ||||| || ||||| || ||||
Sbjct 939 -TGCATTGCTCTCCGACAAGAAGTTCAC-AAGCCAA-TACCTC-GAAGAGAATCAGAAAC 994
Query 998 GGCTCAAGAACAGACAGAGAAAG-CTCGTGT-TGGGTCTAGAGGCCATCGGG-ATCAAAT 1054
| |||||| |||||||||| | ||||||| ||| ||| ||| | | |||| || | |
Sbjct 995 GACTCAAGTCCAGACAGAGAC-GTCTCGTGTCTGG-TCTTGAGTC-AGCGGGGATTACTT 1051
Query 1055 GTCTGAAGA-GTAATGCGGGACTCTTTTGTTGGGTCGACATGAGAC-CTCTCCTTAGAT- 1111
| |||| || | || ||||| | || ||||||||||||||||||| | || || ||
Sbjct 1052 GCCTGA-GAAGCAACGCGGGTTTGTTCTGTTGGGTCGACATGAGACAC-CTT-TTGGACA 1108
Query 1112 CTAAA-ACGTTCGAAGCGGAAATGGATCTTTGGAAGAAGATTGTTTACGAA-GTGAAGCT 1169
| ||| || || ||||| || | ||||| ||||| |||||||||||| || ||||| ||
Sbjct 1109 C-AAACACATTTGAAGCAGAGCTTGATCTCTGGAAAAAGATTGTTTAC-AACGTGAAACT 1166
Query 1170 CAACATCTCTCCTGGTTCGTCGTGCCATTGTGAA-GAACCGGGTTGGTTTAGAGTTTGTT 1228
|||||||| || |||||||| || || || | ||||||||||||||||| |||||||
Sbjct 1167 AAACATCTCACCCGGTTCGTCATGTCACTGC-ACCGAACCGGGTTGGTTTAGGGTTTGTT 1225
Query 1229 TCGCGAACATGA 1240
|||| || ||||
Sbjct 1226 TCGCTAATATGA 1237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53288252755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5