BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22830.1
Length=2025
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899581 jgi|Araly1|899581|Al_scaffold_0004_231 2302 0.0
Ahg490840 jgi|Araly1|490840|fgenesh2_kg.7__273__AT4G37760.1 987 0.0
> Ahg899581 jgi|Araly1|899581|Al_scaffold_0004_231
Length=1686
Score = 2302 bits (1246), Expect = 0.0
Identities = 1396/1470 (95%), Gaps = 4/1470 (0%)
Strand=Plus/Plus
Query 289 AATAAGAAGAATCGTGGACTCGTCGTTTCCCAAAACGATACCGTATCCAAAAATCTTGAA 348
||||||||||||||||||||||||||||||| |||||| |||||||| || | |||||
Sbjct 211 AATAAGAAGAATCGTGGACTCGTCGTTTCCCTAAACGACACCGTATCGAATATTCTTGCG 270
Query 349 ACGGAGGTTGATTCTGGCACTGATGTGATCATCGTCGGAGCTGGTGTCGCCGGTTCCGCT 408
||||||| |||||| | ||| ||||| |||||||||||||||||||| ||||| |||||
Sbjct 271 ACGGAGGCTGATTCCGTCACCGATGTTATCATCGTCGGAGCTGGTGTTTCCGGTGCCGCT 330
Query 409 CTTGCTCATACTCTCGGCAAGGAAGGAAGAAGAGTGCACGTTATAGAAAGAGATTTTTCT 468
||||||||||||||||||||||||||| ||||||| || ||||||||||||||||| |||
Sbjct 331 CTTGCTCATACTCTCGGCAAGGAAGGACGAAGAGTTCATGTTATAGAAAGAGATTTGTCT 390
Query 469 GAGCAAGACAGAATCGTTGGTGAATTGCTTCAACCTGGTGGTTATTTGAAGTTAATAGAA 528
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 391 GAGCAAGACAGAATTGTTGGTGAATTGCTTCAACCTGGTGGTTACTTGAAGTTAATCGAA 450
Query 529 CTTGGACTTGAAGATTGTGTGAAGAAGATTGATGCTCAACGAGTTCTTGGTTATGTTCTC 588
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 451 CTTGGACTTGAGGATTGTGTGAAGAAGATAGATGCTCAACGAGTTCTTGGTTATGTTCTC 510
Query 589 TTTAAAGATGGGAAGCATACTAAACTTGCTTACCCCTTGGAAACGTTTGATTCGGATGTA 648
|||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 511 TTTAAAGATGGGAAACATACTAAACTTTCTTACCCTTTGGAAACGTTTGATTCGGATGTA 570
Query 649 GCCGGGAGAAGTTTCCATAATGGGAGATTTGTACAGAGAATGCGAGAAAAAGCC-CTTAC 707
||||||||||||||||| |||||||||||||| ||||||||||||||||||||| | |||
Sbjct 571 GCCGGGAGAAGTTTCCACAATGGGAGATTTGTGCAGAGAATGCGAGAAAAAGCCGC-TAC 629
Query 708 TCTTTCAAATGTACGATTGGAACAAGGAACGGTTACGTCGTTGCTTGAAGAACACGGGAC 767
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 630 TCTTTCAAATGTACGATTGGAACAAGGAACGGTTACGTCGTTGCTTGAAGAAAACGGGAC 689
Query 768 AATTAAAGGGGTTCGATACAGAACAAAAGAGGGCAATGAGTTTAGATCATTTGCTCCTCT 827
||| ||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||
Sbjct 690 AATCAAAGGGGTTCGATACAGGACAAAGGAGGGCAATGAGCTTAGATCATTTGCTCCTCT 749
Query 828 CACAATTGTATGTGATGGTTGTTTCTCCAACTTGCGTCGCTCTCTTTGCAAACCTAAGGT 887
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 750 CACAATTGTATGTGATGGTTGTTTCTCCAACTTGCGTCGCTCTCTTTGTAAACCTAAGGT 809
Query 888 GGAT-GTGCCATCTACTTTTGTGGGTCTTGTCTTGGAGAACTGTGAACTTCCATTTGCAA 946
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 GGATAG-GCCATCTACTTTTGTGGGTCTTGTCTTGGAGAACTGTGAACTTCCATTTGCAA 868
Query 947 ATCACGGGCACGTTGTTCTCGGTGACCCATCACCCATCTTAATGTATCCCATCAGCAGTT 1006
|||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 869 ATCACGGGCATGTTGTTCTCGCTGACCCATCTCCCATCTTAATGTATCCCATCAGCAGTT 928
Query 1007 CTGAAGTCCGTTGCTTAGTAGATGTACCGGGTCAAAAACTTCCTCCCATTGCAAATGGTG 1066
||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| |
Sbjct 929 CTGAAGTCCGTTGCTTAGTCGATGTACCGGGTCAAAAAGTTCCTCCCATTGGAAATGGCG 988
Query 1067 AAATGGCAAAGTATCTGAAAACACGGGTTGCGCCTCAAGTACCAACCAAGGTCCGTGAAG 1126
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 989 AAATGGCAAAGTATCTGAAAACACGGGTTGCGCCTCAAGTACCAACCGAGGTCCGTGAAG 1048
Query 1127 CATTCATCACCGCTGTTGAGAAAGGTAATATCAGAACCATGCCAAACCGAAGCATGCCAG 1186
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1049 CATTCATCACCGCGGTTGAGAAAGGTAATATCAAAACCATGCCAAACCGAAGCATGCCAG 1108
Query 1187 CTGATCCGATTCCTACTCCTGGAGCTCTTCTTCTTGGTGATGCATTCAACATGAGACATC 1246
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1109 CTGATCCGATTCCTACTCCTGGAGCTCTTCTTCTAGGTGATGCATTCAACATGAGACATC 1168
Query 1247 CTTTAACCGGTGGTGGGATGACCGTTGCATTGGCGGATATAGTTGTACTCCGTGATCTTC 1306
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1169 CTTTAACTGGTGGTGGGATGACCGTTGCATTGGCGGATATCGTTGTACTCCGTGATCTTC 1228
Query 1307 TAAGGCCAATTCGCAACCTTAATGACAAAGAAGCTTTGTCTAAGTATATTGAATCCTTTT 1366
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1229 TAACGCCAATTCGCAACCTTAATGACAAAGAAGCTTTGTCTAAGTATATTGAATCTTTTT 1288
Query 1367 ACACACTACGAAAACCTGTAGCTTCCACCATTAATACATTGGCGGATGCGTTGTATAAGG 1426
||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||| ||
Sbjct 1289 ACACACTGCGAAAACCTGTAGCTTCCACCATTAATACGCTGGCGGACGCGTTGTATATGG 1348
Query 1427 TCTTTTTAGCATCTTCAGATGAAGCAAGAACGGAAATGCGTGAAGCTTGCTTCGACTATC 1486
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1349 TCTTTTTAGCATCTTCGGATGAAGCAAGAACGGAAATGCGTGAAGCTTGCTTCAACTATC 1408
Query 1487 TTAGCCTTGGAGGTGTTTTCTCATCTGGTCCAGTTGCATTGCTCTCTGGTTTAAACCCTC 1546
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1409 TTAGCCTTGGAGGTGTTTGCTCATCTGGTCCAGTTGCATTGCTATCTGGTTTAAACCCTC 1468
Query 1547 GTCCTCTGAGTTTAGTTCTCCACTTCTTTGCTGTGGCGATCTACGCTGTTTGTCGTTTAA 1606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1469 GTCCTCTGAGTTTAGTTCTCCACTTCTTTGCTGTGGCGATCTACGCTGTTTGTCGTTTAA 1528
Query 1607 TGCTACCATTTCCTTCGATTGAGAGCTTTTGGCTTGGAGCTAGGATAATCTCGAGTGCTT 1666
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1529 TGCTACCATTTCCTTCGATTAAAAGCTTTTGGCTTGGAGCTAGGATAATCTCGAGTGCTA 1588
Query 1667 CAAGCATCATCTTTCCAATAATTAAAGCAGAGGGAGTTAGACAAATGTTCTTCCCTCGTA 1726
|||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||| ||||
Sbjct 1589 CAAGCATCATCTTTCCCATAATCAAAGCTGAGGGAGTTAGGCAAATGTTCTTCCCGCGTA 1648
Query 1727 CAATCCCTGCCATATACCGTGCTCCTCCTT 1756
| ||| |||||||||||||| |||||||||
Sbjct 1649 CTATCGCTGCCATATACCGTACTCCTCCTT 1678
Score = 265 bits (143), Expect = 1e-69
Identities = 174/189 (92%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 1 ATGAAACCATTCGTAATCAGGAACCTTCCAAGATTTCAATCAACTCTTAGATCTTCGCTT 60
|||||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 1 ATGAAATTATTCGTAATCAAGAACCTTCCAAGATTTCAATTAACTCTTAGATCTTTGCTT 60
Query 61 CTCTACACAAATCATCGCCCCTCTTCTCGATTCTCTCTCTCTACTCGTCGATTCACCACC 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 CTCTACACAAATCATCGTCCCTCTTCTCGATTCTCTCTCTCTACTCGTCGATTAACCACC 120
Query 121 GGAGCCACCTACATTCGCCGATGGAAAGCAACGGCGGCGCAGACACTCAAACT-CTCCGC 179
|||||||||||||||||||| ||||||||||||||| ||||| || |||| | | ||||
Sbjct 121 GGAGCCACCTACATTCGCCGCGGGAAAGCAACGGCGGAGCAGAGACACAAA-TGCGCCGC 179
Query 180 CGTGAACTC 188
|||||||||
Sbjct 180 CGTGAACTC 188
> Ahg490840 jgi|Araly1|490840|fgenesh2_kg.7__273__AT4G37760.1
Length=1775
Score = 987 bits (534), Expect = 0.0
Identities = 1125/1407 (80%), Gaps = 54/1407 (4%)
Strand=Plus/Plus
Query 376 ATCATCGTCGGAGCTGGTGTCGCCGGTTCCGCTCTTGCTCATACTCTCGGCAAGGAAGGA 435
||||||||||| |||||||||||||| | || ||||||||||| || || ||||||||
Sbjct 272 ATCATCGTCGGTGCTGGTGTCGCCGGCGCTGCCCTTGCTCATACCCTAGGAAAGGAAGGG 331
Query 436 AGAAGAGTGCACGTTATAGAAAGAGATTTTTCTGAGCAAGACAGAATCGTTGGTGAATTG 495
|||||||| ||||||||||||||||| || |||||| ||| ||||||| |||||||||
Sbjct 332 AGAAGAGTTCACGTTATAGAAAGAGACTTAACTGAGCCTGACCGAATCGTCGGTGAATTG 391
Query 496 CTTCAACCTGGTGGTTATTTGAAGTTAATAGAACTTGGACTTGAAGATTGTGTGAAGAAG 555
||||| ||||||||||| ||||||||||| ||||| || |||||||||||||||||| ||
Sbjct 392 CTTCAGCCTGGTGGTTACTTGAAGTTAATCGAACTCGGGCTTGAAGATTGTGTGAAGGAG 451
Query 556 ATTGATGCTCA-ACGAGTTCTTGGTTATGTTCTCTTTAAAGATGGGAAGCATACTAAACT 614
|| ||||| || | ||||||||||||||| |||||||||||||||||| || |||||||
Sbjct 452 ATAGATGCGCAGA-GAGTTCTTGGTTATGCTCTCTTTAAAGATGGGAAACACACTAAAC- 509
Query 615 TG-CTTACCCCTTGGAAAC-GTTTGATTCGGATGTAGCCGGG-AGAAG-TTTCCATAATG 670
|| ||||||| |||| | | ||||||||| ||||| | |||| | || ||| || ||||
Sbjct 510 TGTCTTACCCGTTGG-ATCAGTTTGATTCCGATGTTG-CGGGTCGTAGCTTT-CACAATG 566
Query 671 GGAGATTTGTACAGAGAATGCGAGAAAAAGC-CCTTACTCTTTCAAATGTACGATTGGAA 729
|||||||||| ||| | |||||||| ||||| ||| | ||| | ||||| ||| ||||
Sbjct 567 GGAGATTTGTGCAGCGGATGCGAGAGAAAGCTTCTT-CACTTCCCAATGTTCGAATGGAG 625
Query 730 CAAGGAACGGTTACGTCGTTGCTTGAAGAACACGGGACAATTAAAGGGGTTCGATACAGA 789
|||||||| || || |||||| | |||||| |||| | ||| ||||| |||| ||||| |
Sbjct 626 CAAGGAACAGTGACATCGTTGGTGGAAGAAAACGGAATAATCAAAGGTGTTCAATACAAA 685
Query 790 ACAAAAGA-GGGCAATGAGTTTAGATCATTTGCTCCTCTCACAATTGTATGTGATGGTTG 848
|| ||||| || ||| || ||| |||||||||||||||||| |||||||||||||||||
Sbjct 686 ACCAAAGATGGCCAA-GAACTTAAATCATTTGCTCCTCTCACTATTGTATGTGATGGTTG 744
Query 849 TTTCTCCAACTTGCGTCGCTCTCTTTGCAAACCTAAGGTGGATGTGCCATCTACTTTTGT 908
|||||||||||||||||| ||||| ||||||||||||||||| |||||||| | ||| ||
Sbjct 745 TTTCTCCAACTTGCGTCGATCTCTCTGCAAACCTAAGGTGGAGGTGCCATCCAATTTCGT 804
Query 909 GGGTCTTGTCTTGGAGAACTGTGAACTTCCATTTGCAAATCACGGGCACGTTGTTCTCGG 968
|||||| || |||||||| || ||||| |||||| | || ||||| || |||||||||||
Sbjct 805 GGGTCTGGTGTTGGAGAATTGCGAACTCCCATTTCCGAACCACGGACATGTTGTTCTCGG 864
Query 969 TGACCCATCACCCATCTTAATGTATCCCATCAGCAGTTCTGAAGTCCGTTGCTTAGTAGA 1028
|||||||||||||| ||| | ||||| |||||||| || |||||||||||||| || ||
Sbjct 865 CGACCCATCACCCATTTTATTCTATCCTATCAGCAGCTCGGAAGTCCGTTGCTTGGTTGA 924
Query 1029 TGTACCGGGT-CAAAAACTTCCTCCCATT-GCAAATGGTGAAATGGCAAAGTATCTGAAA 1086
||| || ||| ||||| |||||| | | | |||| || |||||||| | |||| |||
Sbjct 925 TGTTCCAGGTTCAAAA-CTTCCTTC-AGTCGCAAGCGGCGAAATGGCTCACCATCTCAAA 982
Query 1087 ACA-CGGGTTGCGCCTCAAGTACCAAC-CAAGGTCCGTGAAGCATTCATCACCGCTGTTG 1144
||| | | | || || || ||||| | ||| |||| || | ||||| | || || |
Sbjct 983 ACAACAG-TCGCACCCCAGGTACCGCCTCAAA-TCCGCGATTCGTTCATTTCTGCGGTCG 1040
Query 1145 AGAAAGGTAATATCAGAACCATGCCAAACCGAAGCATGCCAGCTGATCCGATTCCTACTC 1204
| |||||||| || ||||| ||||| ||||||||||||||||| || || |||| ||| |
Sbjct 1041 AAAAAGGTAACATAAGAACAATGCCTAACCGAAGCATGCCAGCCGACCCAATTCATACAC 1100
Query 1205 CTGGAGCTCTTCTTCTT-GGTGATGCATTCAACATGAGACATCCT-TTAACCGGTGGTGG 1262
| |||||||| ||| || || || |||||||||||| | |||||| ||| |||| || ||
Sbjct 1101 CCGGAGCTCTGCTT-TTAGGCGACGCATTCAACATGCGCCATCCTCTTA-CCGGAGGCGG 1158
Query 1263 GATGACCGTTGCATTGGCGGATATAGTTGTACTCCGTGATCT-TCTAAGGCCAATTCG-C 1320
|||||||| |||||| | |||||||| | ||||| ||||| | ||| || | || |
Sbjct 1159 TATGACCGTCGCATTGTCTGATATAGTCATCCTCCGCGATCTAT-TAAACCCGCT-CGTC 1216
Query 1321 AACCTTAATGA-CAAAGAAG-CTTTGTCTAAGTATATTGAATCCTTTTACACACTACGAA 1378
|| |||| | |||||| | | || || || || || ||||| || ||||| | ||||
Sbjct 1217 GAC-TTAACCAACAAAGA-GTCCTTATCCAAATACATCGAATCGTTCTACACGTTGCGAA 1274
Query 1379 AACCTGTAGCTTCCACCATTAATACATTGGC-GGATGCG-TTGTATAAGGTCTTTTTAGC 1436
|||| || ||||| || || ||||| | || ||| || || || || |||||||| ||
Sbjct 1275 AACCGGTTGCTTCGACTATCAATACGCTCGCAGGA-GCTCTT-TACAAAGTCTTTTTGGC 1332
Query 1437 ATCTTCAGATGAAGCAAGAA-CGGAAATGCGT-GAAGCTTGCTTCGACTATCTTAGCCTT 1494
||| |||| || || |||| || |||||||| || ||||||||||| |||||||||||
Sbjct 1333 TTCTCCAGACGATGCGAGAAGCG-AAATGCGTCGA-GCTTGCTTCGATTATCTTAGCCTC 1390
Query 1495 GGAGGTGTTTTCTCATCTGGTCCAGTTGCATTGCTCTCTGGTTTAAACCCTCGTCCTCTG 1554
||||| |||| ||| || || ||||| || |||||||| ||||| ||||| || ||| ||
Sbjct 1391 GGAGGGGTTTGCTCCTCAGGACCAGTGGCTTTGCTCTCAGGTTTGAACCCGCGACCTATG 1450
Query 1555 AGT-TTAGTTCTCCACTTCTTTGCTGTGGCGATCTACGCTGTTTGTCGTTTAAT-GCTAC 1612
|| || ||||| || ||||| || || ||||| | || ||| ||||||| | | |||
Sbjct 1451 AGCCTT-GTTCTTCATTTCTTCGCAGTTGCGATTTTCGGGGTTGGTCGTTTGCTTG-TAC 1508
Query 1613 CATTTCC-TTC-GATTGAGA-GCTTTTGGCTTGGAGCTAGGA-TAATCTCGAGTGCTTCA 1668
| | ||| ||| | | | | | || ||||| ||||| || | |||||||||||||||||
Sbjct 1509 C-TCTCCCTTCCG-TCAA-ACGGTTATGGCTCGGAGCGAG-ACTAATCTCGAGTGCTTCA 1564
Query 1669 AGCATCATCTTTCCAATAATTAAAGCAGAGGGAGTTAGACAAATGTTCTTCCCTCGTACA 1728
| || || ||||||||||| |||||||| || || || ||||||||||||||||| ||
Sbjct 1565 GGGATAATATTTCCAATAATAAAAGCAGAAGGTGTGAGGCAAATGTTCTTCCCTCGAACT 1624
Query 1729 ATCCCTGCCATATACCGTGCTCCTCCT 1755
|| |||||||| ||| | |||||||||
Sbjct 1625 ATTCCTGCCATTTACAGAGCTCCTCCT 1651
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76142399755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5