BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22840.1
Length=1838
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481147 jgi|Araly1|481147|fgenesh2_kg.4__207__AT2G22840.1 2824 0.0
Ahg888283 jgi|Araly1|888283|Al_scaffold_0007_269 416 3e-115
> Ahg481147 jgi|Araly1|481147|fgenesh2_kg.4__207__AT2G22840.1
Length=1829
Score = 2824 bits (1529), Expect = 0.0
Identities = 1742/1842 (95%), Gaps = 26/1842 (1%)
Strand=Plus/Plus
Query 3 AAGCGATTACCTCCCATGGGAAAAATCTCTGAAGTGATTATTTAGCAC---TACTTTTTC 59
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1 AAGCGATTACCTCCCATGGGAAAAATCTCTGAAGTGATTATTTAGCACTTTTTTTTTTTT 60
Query 60 TTTGTCTCCTTCTGAATCCATTTTTTATGGATCTTGGAGTTCGTGTTTCTGGTCATGAAA 119
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 61 TTTGTCTCCTTCTGAATCCA-TTTTTATGGATCTTGGGGTTCGTGTTTCTGGTCATGAAA 119
Query 120 CCGTTTCTTCTCCGGGTCAAACTGAACTCGGATCTGGTTTCAGTAACAAGCAAGAAAGAT 179
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 120 ACGGTTCTTCTCCGGGTCAAACTGAACTCGGATCTGGTTTCAGCAACAAGCAAGAAAGAT 179
Query 180 CCGGTTTCGATGGTGAAGATTGCTGGAGAAGTTCAAAGCTCTCACG-A-A-CATCAACTG 236
|||||||||||||||||||||||||||||||||||||||||||| | | | |||||||||
Sbjct 180 CCGGTTTCGATGGTGAAGATTGCTGGAGAAGTTCAAAGCTCTCAAGAACATCATCAACTG 239
Query 237 ATGGATTCTCTTCTTCCCCTGCCTCTGCTAAAACGCTGTCGTTTCATCAAGGCATCCCTT 296
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 240 ATGGATTCTCTTCTTCCTCTGCCTCTGCTAAAACACTGTCGTTTCATCAAGGCATCCCTT 299
Query 297 TACTGAGATCTACCACTATTAATGATCCTCGTAAAGGACAAGAACACATGCTTAGCTTCT 356
|||||||||||||||||| | ||||||||||| |||||||||||| |||||||||||||
Sbjct 300 TACTGAGATCTACCACTA-T--TGATCCTCGTAGAGGACAAGAACATATGCTTAGCTTCT 356
Query 357 CTTCTGCTTCAGGCAAATCAGATGTCTCACCTTATCTTCAGTACTGTAGAAACTCAGGAT 416
||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CTTCTACTTCCGACAAATCAGATGTCTCACCTTATCTTCAGTACTGTAGAAACTCAGGAT 416
Query 417 ATGGTTTAGGAGGAATGATGAACACAAGCAACATGCATGGAAACTTGTTGACAGGAGTAA 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 417 ATGGTTTAGGAGGAATGATGAACACAAGCAACATGCATGGAAACTTGTTGACAGGCGTAA 476
Query 477 AAGGACCTTTTTCATTGACTCAGTGGGCAGAGCTAGAGCAACAGGCGTTGATCTATAAGT 536
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 477 AAGGACCTTTTTCATTGACTCAATGGGCAGAGCTAGAGCAACAGGCTTTGATCTATAAGT 536
Query 537 ATATCACAGCCAATGTCCCTGTTCCATCTAGTTTACTTCTCTCTCTCAAGAAATCTTTTT 596
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 537 ATATCACAGCCAATGTCCCTGTGCCATCTAGTTTACTTCTCTCTCTCAAGAAATCTTTTT 596
Query 597 TCCCTTATGGTTCCTTGCCTCCTAATTCTTTTGGATGGGGCTCTTTTCATCTGGGCTTTT 656
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TCCCTTATGGATCTTTGCCTCCTAATTCTTTTGGATGGGGCTCTTTTCATCTGGGCTTTT 656
Query 657 CCGGTGGTAACATGGATCCCGAGCCAGGGAGATGTCGCCGGACAGATGGAAAGAAATGGC 716
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 657 CCGGTGGTAACATGGATCCCGAGCCCGGGAGATGTCGCCGGACAGATGGAAAGAAATGGC 716
Query 717 GGTGCTCGAGGGACGCTGTTCCCGATCAAAAGTACTGTGAACGACATATTAACAGAGGCC 776
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GATGCTCGAGGGACGCTGTTCCCGATCAAAAGTACTGTGAACGACATATTAACAGAGGCC 776
Query 777 GCCATCGTTCAAGAAAGCCTGTGGAAGGCCAAAATGGCCACAATACTAAtgctgccgccg 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GCCATCGTTCAAGAAAGCCTGTGGAAGGCCAAAATGGCCACAATACTAATGCTGCCGCCG 836
Query 837 ctgcttctgctgctgccgcttctaccgctgctgctgTGTCCAAAGCGGCAGCGGGGACTT 896
|| | |||| ||||| |||||| ||||||||||||||||||||||| || |||||||
Sbjct 837 CT--T-CTGCCGCTGC---TTCTACTGCTGCTGCTGTGTCCAAAGCGGCTGCAGGGACTT 890
Query 897 CAGCTGTTGCGATGCGTGGATCAGATAATAACAATAGCCTTGCCGCTGCTGTTGGAACAC 956
||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 891 CAGCTATTGCAATGCGTGGATCAGATAATAACAATAGCCTTACCGCTGCTGTTGGAACAC 950
Query 957 AACATCATACCAATAATCAATCTACAGATTCTTTGGCTAACAGAGTTCAAAATTCTCGAG 1016
| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 951 ATCATCATGCCAATAATCAATCTACAGATTCTTTGGCTAACAGGGTTCAAAATTCTCGAG 1010
Query 1017 GGGCTTCGGTTTTTCCTGCCACGATGAACTTACAGTCGAAGGAAACTCATCCGAAACAAA 1076
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1011 GGGCTTTGGTTTTTCCTGCCACGATGAACTTACAGCCGAAGGAAACTCATCCGAAACAAA 1070
Query 1077 GCAATAATCCCTTTGAATTCGGACTCATCTCTTCTGATTCGTTACTTAATCCGTCGCATA 1136
|||||||| | |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1071 GCAATAATTCTTTTGAATTCGGACTCATCTCCTCTGATTCGTTACTTAATCCGTCACATA 1130
Query 1137 AACAAGCCTCGTATGCAACCTCTTCCAAAGGCTTTGGATCGTATCTTGACTTCGGCAACC 1196
|||||||||| ||||||| |||||| ||||||||||| ||||||||||||||| ||||||
Sbjct 1131 AACAAGCCTCTTATGCAAACTCTTCGAAAGGCTTTGGCTCGTATCTTGACTTCAGCAACC 1190
Query 1197 AAGCCAAGCACGCGGGGAATCACAACAATGTCGATTCTTGGCCCGAAGAGCTGAAATCGG 1256
|||| |||||||||||||||||| |||||| |||||||||||| ||||||||||||||||
Sbjct 1191 AAGCGAAGCACGCGGGGAATCACCACAATGACGATTCTTGGCCTGAAGAGCTGAAATCGG 1250
Query 1257 ATTGGACTCAGCTCTCAATGTCAATCCCTATGGCTCCATCTTCCCCTGTTCAAGATAAAC 1316
|||||||||||||||||||||||||||| ||||||||||| || ||||| ||||||||||
Sbjct 1251 ATTGGACTCAGCTCTCAATGTCAATCCCCATGGCTCCATCATCTCCTGTACAAGATAAAC 1310
Query 1317 TTGCACTCTCACCTTTAAGGTTATCGCGTGAGTTTGACCCCGCGATCCACATGGGATTAG 1376
| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1311 TAGCACTCTCGCCTTTAAGGTTATCGCGTGAGTTTGACCCTGCGATCCACATGGGATTAG 1370
Query 1377 GCGTCAACACCGAGTTTCTTGACCCCGGGAAAAAGACGAATAACTGGATACCAATCTCCT 1436
| |||||||| ||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 1371 GTGTCAACACTGAGTTTCTTGAGCCTGGGAAAAAGACAAATAACTGGATACCAATCTCCT 1430
Query 1437 GGGGTAATAACAACTCCATGGGAGGTCCACTCGGCGAGGTACTAAACAGCACGACCAATA 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1431 GGGGTAATAACAACTCCATGGGAGGTCCACTCGGCGAGGTACTAAACAGCACGACGAATA 1490
Query 1497 GTCCCAAGTTTGGTTCCTCTCCAACAGGCGTCTTGCAAAAGTCGACATTTGGTTCTCTTT 1556
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1491 GTCCCAAGTTTGGTTCTTCTCCAACGGGCGTCTTGCAAAAGTCGACATTTGGTTCTCTTT 1550
Query 1557 CTAACAGCAGCTCGGCAAGCAGCACCATCATTGGCGATAACAACAATAAGAACGGTGATG 1616
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 CTAACAGCAGCTCGGGAAGCAGCACCATCATTGGCGATAACAACAATAAGAACGGTGATG 1610
Query 1617 GAAAAGATCCGCTTGGCCCGACCACGCTGATGAATACTTCTGCTACTGCTCCTTCTCTGT 1676
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1611 GAAAGGATCCGCTTGGCCCGACCACGCTGATGAACACTTCTGCTACTGCTCCTTCTCTGT 1670
Query 1677 GAAACTGaaaaaaaaaaaCTAAGGACAATTGCGAAAACAAAAACACtctgtttttctctg 1736
|||||| ||||||||||||||||||| || |||||||||||| |||||||||||||||||
Sbjct 1671 GAAACTAAAAAAAAAAAACTAAGGACGATGGCGAAAACAAAA-CACTCTGTTTTTCTCTG 1729
Query 1737 tttctggtt-tttcttacttgatgcattgttgtt-tc-t-gttgctgtt-tt--ctttct 1789
|||||| || |||||||||||||| ||||||||| | | |||| |||| || ||||||
Sbjct 1730 TTTCTG-TTCTTTCTTACTTGATGTATTGTTGTTGTTGTTGTTGTTGTTGTTTTCTTTCT 1788
Query 1790 ATATAAAGCAAGAAGAAACTAAAGGAGAGATGTGTGtttttt 1831
||||||||| ||||||||||||||||||||||| | ||||||
Sbjct 1789 ATATAAAGCCAGAAGAAACTAAAGGAGAGATGTAT-TTTTTT 1829
> Ahg888283 jgi|Araly1|888283|Al_scaffold_0007_269
Length=1623
Score = 416 bits (225), Expect = 3e-115
Identities = 380/452 (84%), Gaps = 21/452 (5%)
Strand=Plus/Plus
Query 398 TACTGTAGAAACTC---AGGATATGGTT-TAGGAGGAATGATGA--ACACAAGCAACATG 451
|||| ||||| ||| ||||||||||| | || |||||||||| | ||| | | ||||
Sbjct 406 TACTTTAGAAGCTCAGGAGGATATGGTTCT-GGTGGAATGATGATGA-ACATG-AGCATG 462
Query 452 CATGGAAACTTGTTGACAGGAGTAAAAGGACCTTTTTCATTGACTCAGTGGGCAGAGCTA 511
|| || ||| || || || || |||||||||||| |||||||||| ||||| ||||||
Sbjct 463 CAAGGGAAC---TTCACTGGTGTTAAAGGACCTTTTACATTGACTCAATGGGCTGAGCTA 519
Query 512 GAGCAACAGGCGTTGATCTATAAGTATATCACAGCCAATGTCCCTGTTCCATCTAGTTTA 571
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 520 GAGCAACAGGCGTTGATCTATAAGTATATCACAGCCAATGTCCCTGTTCCTTCAAGTTTG 579
Query 572 CTTC-TCTCTCTCAAGAAATCTTTTTTCCCTTATGGTTCCTTGCCTCCTAATTCTTTTGG 630
|| | ||||| ||||||| ||||||| ||||||||| || |||||||||| |||||| ||
Sbjct 580 CT-CATCTCTATCAAGAAGTCTTTTTACCCTTATGGATCTTTGCCTCCTAGTTCTTTCGG 638
Query 631 ATGGGGCTCTTTTCATCTGGGCTTTTCC-GGTGGTAACATGGATCCCGAGCCAGGGAGAT 689
|||||| |||| ||||| || |||| | || |||||||||||||| |||||||||||||
Sbjct 639 ATGGGGAACTTTCCATCTCGG-TTTTGCAGGCGGTAACATGGATCCTGAGCCAGGGAGAT 697
Query 690 GTCGCCGGACAGATGGAAAGAAATGGCGGTGCTCGAGGGACGCTGTTCCCGATCA-AAAG 748
| || | |||||||| ||||||||||||||||| || ||||||||||| ||||| |||
Sbjct 698 GCCGTAGAACAGATGGGAAGAAATGGCGGTGCTCAAGAGACGCTGTTCCTGATCAGAAA- 756
Query 749 TACTGTGAACGACATATTAACAGAGGCCGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAA 808
|| |||||| |||| || ||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 757 TATTGTGAAAGACACATCAACAGAGGCCGTCATCGTTCAAGAAAGCCTGTGGAAGTCCAA 816
Query 809 AATGGCCACAATACTAAtgctgccgccgctgc 840
|||||| || || || | ||||| |||||
Sbjct 817 TCTGGCCA-AA-ACCAAACC-GCCGCTGCTGC 845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69019523940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5