BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22850.1
Length=868
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932254 jgi|Araly1|932254|scaffold_400242.1 1066 0.0
> Ahg932254 jgi|Araly1|932254|scaffold_400242.1
Length=724
Score = 1066 bits (577), Expect = 0.0
Identities = 680/729 (93%), Gaps = 9/729 (1%)
Strand=Plus/Plus
Query 39 ACAATTTTAAACCGGTCATTATGATGTCTACTGTACCGGCCTTTACCTTTACTGAACCGG 98
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ACAATTTTGAACCGGTCATTATGATGTCTACTGTACCGGCCTTTTCCTTTACTGAACCGG 60
Query 99 GTTTGGTTAA-CCAATTATCGGATTTCCAGACCGGATTCACTCCTTGGGAATTGAACTGC 157
|||||||||| |||| |||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 61 GTTTGGTTAACCCAA-TATCGGATTTCCAGACCGGATTCACTCCTTGGGAGTTGGACTGC 119
Query 158 TCCGATCTCTTCTCTACAATCCATCTCGAACCGGTCGTACCGAGTCCTTGTTCTGGTGAA 217
||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||
Sbjct 120 TCCGATCTCTTCTCTGCTATCCATCTTGAACCGGTCGTACCGAGTCCTTGTTCTGGTGAA 179
Query 218 TCCGATGCCGGTTCTGTCAAAATTAACACCGATTTTAACGGTTTTGACGAATCGTGTATC 277
||||| |||||||||||||||||||||||| ||||||||||||||||||||| | ||||
Sbjct 180 TCCGAAACCGGTTCTGTCAAAATTAACACCGGTTTTAACGGTTTTGACGAATCTTATATC 239
Query 278 GGTTCCATCAAAACTAACTCCGGTTCTGATGATTCCAACCTTTTCCACGGCGTACCGAGT 337
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 240 GGTTCCATCAAAACGAACTCCGGTTCTGATGATTCCAACCTTTTCCACGGCGTACCAAGT 299
Query 338 CCTCAATCCGACGAATTGGACTCAAAAAACACGAAAATCCGAAGTAACGCCAC-GAATCA 396
||||||||||||||||||||||| | |||||||||||||| | ||||||| | || ||
Sbjct 300 CCTCAATCCGACGAATTGGACTCGGACAACACGAAAATCCGGATTAACGCCCCAGAC-CA 358
Query 397 TAACCGGAACAAATTGAACCGGTCGGTTTTGCAGGTGACTGACGACCGTAAACGCAAACG 456
||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 359 TAACCGGAATAAATTGAACCGGCCGGTTTTGCAGGTGACTGACGACCGTAAACGGAAACG 418
Query 457 GATGGAATCAAACCGAGAATCAGCGAAGCGGTCGAGGATGCGTAAACAAAGACACATTGA 516
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 419 GATGGAATCAAACCGAGAATCAGCAAAGCGGTCGAGGATGCGTAAACAAAGTCACATTGA 478
Query 517 TAATTTAAAAGACGAAGCAAATCGTCTCGGTTTAGAAAACCGGGAACTCGCAAACCGGCT 576
||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 479 GAATCTAAAAGACGAAGCAAACCGGCTCGGTTTAGAAAACCGGGAACTCGCAAACCGGCT 538
Query 577 TCGAATTGTTTTGTACAACATCGCATTAATGTGTACGGACAACAATCAGCTTTTGTCGGA 636
||||| |||||||||||||||| | ||||||||||||||||||||| ||||||||||||
Sbjct 539 CCGAATCGTTTTGTACAACATCGAACTAATGTGTACGGACAACAATCGGCTTTTGTCGGA 598
Query 637 ACAAGAGATTCTCAGACGGAGATTCTTGGAGATGAGGCAGATTTTGATTTTCAGACAGCT 696
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 599 ACAAGAGATTCTCAGACGAAGATTCTTGGAGATGAGGCAGATTTTGATTCTCAGACAGCT 658
Query 697 TCAGCTGAATCCATCATTGATCATCAATCATCATCATATGATTTGaaagaaaaaa-a-aa 754
||||| ||||||||||||||||||||||||||| || ||||||||| ||||||| | ||
Sbjct 659 TCAGCAGAATCCATCATTGATCATCAATCATCAACAAATGATTTGA--GAAAAAATAGAA 716
Query 755 tagaaaaaa 763
||||||||
Sbjct 717 -AGAAAAAA 724
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32137619031
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5