BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22860.1
Length=544
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932255 jgi|Araly1|932255|scaffold_400243.1 425 1e-118
> Ahg932255 jgi|Araly1|932255|scaffold_400243.1
Length=301
Score = 425 bits (230), Expect = 1e-118
Identities = 283/307 (92%), Gaps = 9/307 (3%)
Strand=Plus/Plus
Query 40 TCAAAGAAAATATCACAAAAATGGCAAACGTCTCCGCTTTGCTCACCATAGCTCTTCTCC 99
||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1 TCAAAGAAAATATCACAAAAATGGCAAACGTCTCCGCCCTGCTCACGATAGCTCTTCTCC 60
Query 100 TTTGCTCCACGCTAATGTGCACTGCCCGCCCCGAACCGGCCATCTCCATCTCTATCACGA 159
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 61 TGTGCTCCACGCTAATGTGCACTGCCCGCCCCGAACCGGCCATCTCCGTCTCTATTACGA 120
Query 160 CTGCTGCCGATCCATGTAACATGGAGAAGAAGATAGAAGGAAAATTAGATGACATGCATA 219
||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 121 CTGCTGCCGATCCATGTAACATGGAGAAGAAGATAGAAGGAAAATTAGATG--A--C--A 174
Query 220 TGGTAGACGAAAACTGTGGTGCAGACGACGAAGATTGCTTAATGAGGAGGACTTTGGTCG 279
||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 175 TGGTAGAAGAAAACTGTGGTTCCGACGACGAAGATTGCTTAATGAGGAGGACTTTGGTCG 234
Query 280 CTCATACTGATTACATCTATACCCAGAAGAAGAAGCA---TCCTTGATTTTCACTTACTC 336
||||||||||||||||||||||||||||||||||| | || |||| ||||||| | |
Sbjct 235 CTCATACTGATTACATCTATACCCAGAAGAAGAAGAAGAATCTTTGAGTTTCACTAATTT 294
Query 337 ATTTCTA 343
|||||||
Sbjct 295 ATTTCTA 301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19840906280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5