BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G22860.1 Length=544 Score E Sequences producing significant alignments: (Bits) Value Ahg932255 jgi|Araly1|932255|scaffold_400243.1 425 1e-118 > Ahg932255 jgi|Araly1|932255|scaffold_400243.1 Length=301 Score = 425 bits (230), Expect = 1e-118 Identities = 283/307 (92%), Gaps = 9/307 (3%) Strand=Plus/Plus Query 40 TCAAAGAAAATATCACAAAAATGGCAAACGTCTCCGCTTTGCTCACCATAGCTCTTCTCC 99 ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct 1 TCAAAGAAAATATCACAAAAATGGCAAACGTCTCCGCCCTGCTCACGATAGCTCTTCTCC 60 Query 100 TTTGCTCCACGCTAATGTGCACTGCCCGCCCCGAACCGGCCATCTCCATCTCTATCACGA 159 | ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct 61 TGTGCTCCACGCTAATGTGCACTGCCCGCCCCGAACCGGCCATCTCCGTCTCTATTACGA 120 Query 160 CTGCTGCCGATCCATGTAACATGGAGAAGAAGATAGAAGGAAAATTAGATGACATGCATA 219 ||||||||||||||||||||||||||||||||||||||||||||||||||| | | | Sbjct 121 CTGCTGCCGATCCATGTAACATGGAGAAGAAGATAGAAGGAAAATTAGATG--A--C--A 174 Query 220 TGGTAGACGAAAACTGTGGTGCAGACGACGAAGATTGCTTAATGAGGAGGACTTTGGTCG 279 ||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 175 TGGTAGAAGAAAACTGTGGTTCCGACGACGAAGATTGCTTAATGAGGAGGACTTTGGTCG 234 Query 280 CTCATACTGATTACATCTATACCCAGAAGAAGAAGCA---TCCTTGATTTTCACTTACTC 336 ||||||||||||||||||||||||||||||||||| | || |||| ||||||| | | Sbjct 235 CTCATACTGATTACATCTATACCCAGAAGAAGAAGAAGAATCTTTGAGTTTCACTAATTT 294 Query 337 ATTTCTA 343 ||||||| Sbjct 295 ATTTCTA 301 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19840906280 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5