BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22870.1
Length=1105
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481149 jgi|Araly1|481149|fgenesh2_kg.4__209__AT2G22870.1 1640 0.0
Ahg480475 jgi|Araly1|480475|fgenesh2_kg.3__3176__AT2G22870.1 1485 0.0
> Ahg481149 jgi|Araly1|481149|fgenesh2_kg.4__209__AT2G22870.1
Length=1038
Score = 1640 bits (888), Expect = 0.0
Identities = 990/1040 (95%), Gaps = 3/1040 (0%)
Strand=Plus/Plus
Query 12 AAAACAAAATGGTGCTACTTCTCCGATATCGATCCTTAACGATAAATCTCACTCCTCTAA 71
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1 AAAA-AAAATGGTGCTACTTCTCCGATATCGATCCTTAACGATAAATCTCACTCCTTTGA 59
Query 72 TACCCAAATCTCAAAAATTCCACACTCTCCAATCATTTCGTAACCCTAATTTCATCTCCA 131
|||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 60 TACCAAAATCTCACAAATTCCACACCCTCCAATCATTTCGTAACCCTAATTTCATCTCTA 119
Query 132 TCCCAAAAATCTCAGCCTCCACGAACAATCCAACAACAACAACGAATCGGTCGATCTCCG 191
||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||
Sbjct 120 TCCCAAAAATCTCAGCCTCTTCGAACAATCCAGCAACAACAACGAATCGTTCGATCTCCG 179
Query 192 ACGCGACTAAATTCGCTAAGTCAGTGTTATTCATACCTCCTGGTGTAGAGATTGAGGAAC 251
||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 180 ACGCGGCCAAATTCGCTAAGTCAGTATTATTCATACCTCCTGGTGTAGAGATTGAGGAAC 239
Query 252 TAACAGATGATATGGTTCTTCCGGGTTCAAATATCGTAATCGGACCTTTTGCGGGTCATT 311
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 240 TAACAGATGATATGGTTCTTCCGGGCTCCAATATCGTAATCGGACCTTTTGCGGGTCATT 299
Query 312 CACAAATCAAAGAAGTTGAATTTGTTAAAAGTAGTGCTCGTGCTAGAGATTGTCCTAAAG 371
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 300 CACAAATCAAAGAAGTTGAATTTGTTAAAAGTAGTGCTCGAGCTAGAGATTGTCCTAAAG 359
Query 372 ATGATCGTCCTGAGATTGCGATTTTGGGTCGTTCTAATGTTGGCAAGTCTTCGCTTATCA 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ATGATCGTCCTGAGATTGCGATTTTGGGTCGTTCTAATGTTGGCAAGTCTTCGCTTATCA 419
Query 432 ATTGTTTGGTTCGTAAGAAAGAAGTTGCTCTTACTTCTAAGAAACCTGGGAAGACTCAGC 491
| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 420 ACTGTTTGGTTCGTAAGAAGGAAGTTGCTCTTACCTCTAAGAAACCTGGGAAGACTCAGC 479
Query 492 TTATAAATCACTTCTTGGTGAATAAGAGTTGGTACATTGTGGATTTGCCTGGTTATGGAT 551
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTATAAATCATTTCTTGGTGAATAAGAGTTGGTACATTGTGGATTTGCCTGGTTATGGAT 539
Query 552 TTGCTAAAGTTTCAGATGCTGCGAAAACAGATTGGTCTGCGTTTACTAAAGGTTACTTCT 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTGCTAAAGTTTCAGATGCTGCGAAAACAGATTGGTCTGCGTTTACTAAAGGTTACTTCT 599
Query 612 TGAATAGAGACAGTCTTGTTTGTGTTCTACTTCTCATCGATGCAAGTGTTCCTCCTCAGA 671
||||||| |||| |||||| ||| |||| ||||| |||||||||||||||||||||||||
Sbjct 600 TGAATAGGGACACTCTTGTATGTATTCTTCTTCTGATCGATGCAAGTGTTCCTCCTCAGA 659
Query 672 AGATTGATCTTGATTGTGCTAATTGGCTTGGTCGCAACAATGTACCGATGACTTTCGTGT 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 660 AGATTGATCTTGATTGTGCTAATTGGCTTGGTCGCAACAATGTACCGATGACTTTTGTGT 719
Query 732 TTACGAAATGCGATAAAATGAAAGCAACGAAAGGGAAAAGACCTGATGAGAACATTAAAG 791
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 720 TTACGAAATGCGATAAAATGAAAGCGGCGAAAGGGAAAAGACCTGATGAGAACATCAAAG 779
Query 792 CTTTCCAACAAATCATTAGAGAGAATTTTAAAGTACATCCTCCTTGGATTTTGACGAGTA 851
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 780 CTTTTCAACAAATCATTAGAGAGAATTTCAAAGTACATCCTCCTTGGATTTTGACGAGTA 839
Query 852 GTGTATCTGGTTTAGGCAGAGACGAGCTTCTTCTTCACATGTCGCAGCTGAGAAACTACT 911
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GTGTATCCGGTTTGGGCAGAGACGAGCTTCTTCTTCACATGTCGCAGCTGAGAAACTACT 899
Query 912 GGGATCAATAGGTAGCGCGTAAATTTCGTAAACAAATGTTCGAAAAGGTCGGTTTTGAAT 971
|||||||||||| | | |||||||||| |||||||||||||||||||||||||| |||
Sbjct 900 GGGATCAATAGGAATCTTGTAAATTTCGCGAACAAATGTTCGAAAAGGTCGGTTTT-AAT 958
Query 972 -CATTGGTTATATCAAATTGTAGTTTTGTAATGTAACAGTAACTTTTGTATTTAAAGATA 1030
||||||||||||||||| | |||||||||||||||| |||||||||||||| | |||||
Sbjct 959 ACATTGGTTATATCAAATGGCAGTTTTGTAATGTAACGGTAACTTTTGTATTCATAGATA 1018
Query 1031 AGATCATAAAGTGTTACTAC 1050
||||| |||| |||||||||
Sbjct 1019 AGATCGTAAAATGTTACTAC 1038
> Ahg480475 jgi|Araly1|480475|fgenesh2_kg.3__3176__AT2G22870.1
Length=912
Score = 1485 bits (804), Expect = 0.0
Identities = 878/914 (96%), Gaps = 3/914 (0%)
Strand=Plus/Plus
Query 12 AAAACAAAATGGTGCTACTTCTCCGATATCGATCCTTAACGATAAATCTCACTCCTCTAA 71
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1 AAAA-AAAATGGTGCTACTTCTCCGATATCGATCCTTAACGATAAATCCCACTCCTTTAA 59
Query 72 TACCCAAATCTCAAAAATTCCACACTCTCCAATCATTTCGTAACCCTAATTTCATCTCCA 131
|||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 60 TACCAAAATCTCACAAATTCCACACCCTCCAATCATTTCGTAACCCTAATTTCATCTCCA 119
Query 132 TCCCAAAAATCTCAGCCTCCACGAACAATCCAACAACAACAACGAATCGGTCGATCTCCG 191
||||||| |||||||||| |||||||||||||| ||||||||||||| ||||||||||
Sbjct 120 CCCCAAAAGTCTCAGCCTCTTCGAACAATCCAACACCAACAACGAATCGTTCGATCTCCG 179
Query 192 ACGCGACTAAATTCGCTAAGTCAGTGTTATTCATACCTCCTGGTGTAGAGATTGAGGAAC 251
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ACGCGGCCAAATTCGCTAAGTCAGTGTTATTCATACCTCCTGGTGTAGAGATTGAGGAAC 239
Query 252 TAACAGATGATATGGTTCTTCCGGGTTCAAATATCGTAATCGGACCTTTTGCGGGTCATT 311
||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||
Sbjct 240 TAACAGATGATATGGTTCTTCCGGGCTCCAATATCGTAATCGGACCTTTTGCAGGTCATT 299
Query 312 CACAAATCAAAGAAGTTGAATTTGTTAAAAGTAGTGCTCGTGCTAGAGATTGTC-CTAAA 370
| |||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||
Sbjct 300 CTCAAATCAAAGAAGTTGAATTTGTTAAAAGTAGTGCTCGAGCTAGAGATTG-CACTAAA 358
Query 371 GATGATCGTCCTGAGATTGCGATTTTGGGTCGTTCTAATGTTGGCAAGTCTTCGCTTATC 430
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 359 GATGATCGTCCTGAGATTGCTATTTTGGGTCGTTCTAATGTTGGCAAGTCTTCGCTTATC 418
Query 431 AATTGTTTGGTTCGTAAGAAAGAAGTTGCTCTTACTTCTAAGAAACCTGGGAAGACTCAG 490
|| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 419 AACTGTTTGGTTCGTAAGAAGGAAGTTGCTCTTACCTCTAAGAAACCTGGGAAGACTCAG 478
Query 491 CTTATAAATCACTTCTTGGTGAATAAGAGTTGGTACATTGTGGATTTGCCTGGTTATGGA 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CTTATAAATCACTTCTTGGTGAATAAGAGTTGGTACATTGTGGATTTGCCTGGTTATGGA 538
Query 551 TTTGCTAAAGTTTCAGATGCTGCGAAAACAGATTGGTCTGCGTTTACTAAAGGTTACTTC 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TTTGCTAAAGTTTCAGATGCTGCGAAAACAGATTGGTCTGCGTTTACTAAAGGTTACTTC 598
Query 611 TTGAATAGAGACAGTCTTGTTTGTGTTCTACTTCTCATCGATGCAAGTGTTCCTCCTCAG 670
||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 599 TTGAATAGAGACACTCTTGTATGTGTTCTACTTCTGATCGATGCAAGTGTTCCTCCTCAG 658
Query 671 AAGATTGATCTTGATTGTGCTAATTGGCTTGGTCGCAACAATGTACCGATGACTTTCGTG 730
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 659 AAGATTGATCTTGATTGTGCTAATTGGCTTGGTCGCAACAATGTACAGATGACTTTTGTG 718
Query 731 TTTACGAAATGCGATAAAATGAAAGCAACGAAAGGGAAAAGACCTGATGAGAACATTAAA 790
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 719 TTTACGAAATGCGATAAAATGAAAGCAACGAAAGGGAAAAGACCTGATGAGAACATCAAA 778
Query 791 GCTTTCCAACAAATCATTAGAGAGAATTTTAAAGTACATCCTCCTTGGATTTTGACGAGT 850
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 779 GCTTTCCAACAAATCATTAGAGAGAACTTCAAAGTACATCCTCCTTGGATTTTGACGAGT 838
Query 851 AGTGTATCTGGTTTAGGCAGAGACGAGCTTCTTCTTCACATGTCGCAGCTGAGAAACTAC 910
|||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 839 AGTGTATCGGGTTTGGGCAGAGACGAGCTTCTTCTTCACATGTCGCAGCTAAGAAACTAC 898
Query 911 TGGGATCAATAGGT 924
||||||||||||||
Sbjct 899 TGGGATCAATAGGT 912
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41172750360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5