BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22880.1
Length=345
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481150 jgi|Araly1|481150|fgenesh2_kg.4__210__AT2G22880.1 483 5e-136
Ahg480474 jgi|Araly1|480474|fgenesh2_kg.3__3175__AT2G22880.1 460 2e-129
> Ahg481150 jgi|Araly1|481150|fgenesh2_kg.4__210__AT2G22880.1
Length=351
Score = 483 bits (261), Expect = 5e-136
Identities = 322/351 (92%), Gaps = 6/351 (2%)
Strand=Plus/Plus
Query 1 ATGGAAGCTACTTCACAACCATGTTTCTCTC---A-TA--ACTCCTCACTTCATTCGACC 54
|||||||||||||| || ||||||||||||| | || ||||||| ||||||||||||
Sbjct 1 ATGGAAGCTACTTCTCAGCCATGTTTCTCTCAGAACTACCACTCCTCGCTTCATTCGACC 60
Query 55 CGTAAGCAACCGGCAAAGCCATGGAAAAAACCCGTAACGGGCTTGCCTCAGAGGATGCAT 114
|| ||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||
Sbjct 61 CGAAAGCAACCGGCAAAGCCATGGAAAAAACCCGTATCGGGTTTGCCTCAGCGGATGCAT 120
Query 115 CCTAAAGTTTACAGAGTCGAGCCTGTTAACTTCAAGGAGTTAGTTCAGAGGCTAACTGGT 174
|||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 121 CCTAAAGTTTACCGAGTCGAGCCTGTTAACTTTAAGGAGTTGGTTCAGAGGCTAACTGGT 180
Query 175 GCAGAAGACGTTGAGCAAGAGGTACATCAAGTTGAAGCTAAACCAGTCAAGATTTCTGAT 234
||| | ||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 GCACATGACCATGAGCAAGAGGTACATCAAGTTGAAGCTAAGCCAGTCAAGATTTCTGAT 240
Query 235 GATACAACAACAGCTAAGGATAATCCGTTCGCGTTTGATCTTTCACCTTCGTCATCTCGG 294
|| |||||||||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 241 GACACAACAACAGCTAAGGATAACCCGTTCGCGTTTGATCTTTCACCGTCATCATCTCGG 300
Query 295 TTCTGGGAAGCTTTCCCTCTGCTTAGTCCTGCTAATCTATCAAGATGGTAG 345
|| ||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 301 TTTTGGGAAGCTTTCCCTCTTCTTAGTCCTGCAAATCTTTCAAGATGGTAG 351
> Ahg480474 jgi|Araly1|480474|fgenesh2_kg.3__3175__AT2G22880.1
Length=351
Score = 460 bits (249), Expect = 2e-129
Identities = 318/351 (91%), Gaps = 6/351 (2%)
Strand=Plus/Plus
Query 1 ATGGAAGCTACTTCACAACCATGTTTCTCTC---A-TA--ACTCCTCACTTCATTCGACC 54
|||||||||||||| || ||||||||||||| | || ||||||| ||||||||||||
Sbjct 1 ATGGAAGCTACTTCTCAGCCATGTTTCTCTCAGAACTACCACTCCTCGCTTCATTCGACC 60
Query 55 CGTAAGCAACCGGCAAAGCCATGGAAAAAACCCGTAACGGGCTTGCCTCAGAGGATGCAT 114
|| ||||||||||||||||||||||||||||||||| |||| ||| ||||| ||||||||
Sbjct 61 CGAAAGCAACCGGCAAAGCCATGGAAAAAACCCGTATCGGGTTTGGCTCAGCGGATGCAT 120
Query 115 CCTAAAGTTTACAGAGTCGAGCCTGTTAACTTCAAGGAGTTAGTTCAGAGGCTAACTGGT 174
|||||||||||| ||||| ||||||||||||| |||||||| ||||||||||||||||||
Sbjct 121 CCTAAAGTTTACCGAGTCAAGCCTGTTAACTTTAAGGAGTTGGTTCAGAGGCTAACTGGT 180
Query 175 GCAGAAGACGTTGAGCAAGAGGTACATCAAGTTGAAGCTAAACCAGTCAAGATTTCTGAT 234
||| | ||| |||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 181 GCACATGACCATGAGCAAGAGGTGCATCAAGTTGAAGCTAAGCCAGTCAAGATTTCTGAT 240
Query 235 GATACAACAACAGCTAAGGATAATCCGTTCGCGTTTGATCTTTCACCTTCGTCATCTCGG 294
|| |||||||||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 241 GACACAACAACAGCTAAGGATAACCCGTTCGCGTTTGATCTTTCACCGTCATCATCTCGG 300
Query 295 TTCTGGGAAGCTTTCCCTCTGCTTAGTCCTGCTAATCTATCAAGATGGTAG 345
|| ||||||||||||||||| || |||||||| ||||| ||||||||||||
Sbjct 301 TTTTGGGAAGCTTTCCCTCTTCTCAGTCCTGCAAATCTTTCAAGATGGTAG 351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12247944069
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5