BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G22890.1 Length=955 Score E Sequences producing significant alignments: (Bits) Value Ahg481151 jgi|Araly1|481151|fgenesh2_kg.4__211__AT2G22890.1 1293 0.0 Ahg931389 jgi|Araly1|931389|scaffold_303846.1 468 4e-131 > Ahg481151 jgi|Araly1|481151|fgenesh2_kg.4__211__AT2G22890.1 Length=897 Score = 1293 bits (700), Expect = 0.0 Identities = 838/904 (93%), Gaps = 11/904 (1%) Strand=Plus/Plus Query 4 CTTCAATGGCTACATCTCTTCAAACCAAA-TACACTCTAAATCCCATCACAAACAACATC 62 |||||||||| | | ||||||||| |||| |||||||||| ||| ||||||||||||||| Sbjct 1 CTTCAATGGCAATACCTCTTCAAA-CAAAGTACACTCTAAGTCCAATCACAAACAACATC 59 Query 63 CCAAGAAGCCACCGTCCATCGTTTCTCCGTGTCACTTCCACCACCAACTCTCAGCCTAAC 122 ||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||| Sbjct 60 CCAAGAAGCCACCGTCCGTCGCTTCTCCGTGTCACGTCCACCACCAACTCTCAGCCTAAC 119 Query 123 CATGAGATGAAGCTTGTTGTTGAGCAACGACTTGTGAATCCTCCTCTCTCCAACGACCCA 182 ||| || |||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 120 CAT--GA-GAAGCTTGTTCTTGAGCAACGACTTGTGAATCCTCCTCTCTCCAACGACACA 176 Query 183 ACTCTACAATCTACATGGACTCACCGGTTATGGGTTGCAGCTGGCTGCACCACCGTGTTT 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 177 ACTCTACAATCTACATGGACTCACCGGTTATGGGTTGCAGCTGGCTGCACCACCGTCTTT 236 Query 243 GTCTCTTTTTCCAAATCAATCATTGGAGCATTTGGTTCTCATCTCTGGCTCGAACCATCT 302 ||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||| || Sbjct 237 GTCTCTTTTGCCAAATCGATCATTGGAGCGTTTGGTTCTCATCTCTGGCTCGAACCAACT 296 Query 303 TTAGCCGGTTTCGCCGGGTA-TATCTTAGCAGATCTAGGTTCTGGTGTGTACCACTGGGC 361 ||||||||||| |||||||| | ||||||||||||||||||||||||| ||||||||||| Sbjct 297 TTAGCCGGTTTTGCCGGGTACT-TCTTAGCAGATCTAGGTTCTGGTGTCTACCACTGGGC 355 Query 362 CACCGATAACTACGGTGATGAGTCTACGCCTCTAGTAGGAATCCATATCGAAGACTCTCA 421 |||||||||||||||||||||||| |||||||||||||| | |||||||||||| ||||| Sbjct 356 CACCGATAACTACGGTGATGAGTCAACGCCTCTAGTAGGGACCCATATCGAAGATTCTCA 415 Query 422 AGATCATCACAAGTGTCCATGGACAATCACCAAACGGCAATTTGCAAACAATCTACATTT 481 |||||| |||||||| || |||||||| ||| ||||||||||||||||||||||||||| Sbjct 416 AGATCACCACAAGTGGCCTTGGACAATAACCGGACGGCAATTTGCAAACAATCTACATTT 475 Query 482 TATGGCTCGAGGCACAACCTTGATAGTTCTCCCACTAGACCTTGCTTTTGATGACCATGT 541 |||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 476 TATGGCTCCAGGCACAACTTTGATAGTTCTCCCACTAGACCTTGCATTTGATGACCATGT 535 Query 542 GGTTCATGGCTTTGTAAGCATGTTTGCATTTTGTGTATTGTTTTGTCAGTTGTTCCATGC 601 | ||||||||||||||||||||||||||||| | ||||||||||||||| |||||||| | Sbjct 536 GTTTCATGGCTTTGTAAGCATGTTTGCATTTAGCGTATTGTTTTGTCAGCTGTTCCATAC 595 Query 602 TTGGGCTCATGGAACGAAGAGCAAGCTTCCACCTCTTGTGGTTGGGTTGCAAGACATTGG 661 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 596 TTGGGCTCATGGAACCAAGAGCAAGCTTCCACCTCTTGTGGTGGGGTTGCAAGACATTGG 655 Query 662 GCTTCTTGTTTCACGGATACATCACATGAATCATCACCGAGCACCGTATAACAACAATTA 721 ||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||| Sbjct 656 GCTGCTTGTTTCACGGATACATCATGTGAATCATCACCGAGCACCGTATAATAACAATTA 715 Query 722 CTGCGTAGTGAGTGGGGTGTGGAACAAGGTTTTGGATGAAAGCAATGTCTTTAAGGCAAT 781 |||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| Sbjct 716 CTGCGTAGTGAGTGGGGTTTGGAACAAGGTTTTGGATGAAAGCAAGGTCTTTGAGGCAAT 775 Query 782 GGAGATGGTGTTGTATATCCAACTTGGGG-TGAGACCGAGGTCATGGACCGAGCCAAACT 840 |||||||||||||||| || || ||||| |||||||||||||||||||||| |||||| Sbjct 776 GGAGATGGTGTTGTATTTC-AAGATGGGGGTGAGACCGAGGTCATGGACCGATTCAAACT 834 Query 841 ACGAATG-ACGGAAGAAACCGACATATCCAAATGTTAGCCGTCACTTTTAGCTATATTCT 899 | |||| | ||||||||||||||||| ||||||||||| | ||||||||| |||||||| Sbjct 835 CCTAATGGATGGAAGAAACCGACATATTCAAATGTTAGCGG-CACTTTTAGATATATTCT 893 Query 900 TCGC 903 |||| Sbjct 894 TCGC 897 > Ahg931389 jgi|Araly1|931389|scaffold_303846.1 Length=358 Score = 468 bits (253), Expect = 4e-131 Identities = 324/358 (91%), Gaps = 6/358 (2%) Strand=Plus/Plus Query 544 TTCATGGCTTTGTAAGCATGTTTGCATTTTGTGTATTGTTTTGTCAGTTGTTCCATGCTT 603 ||||||||||||||||||||||||||||| | || |||||||||||| |||||||| ||| Sbjct 4 TTCATGGCTTTGTAAGCATGTTTGCATTTAGCGTGTTGTTTTGTCAGCTGTTCCATACTT 63 Query 604 GGGCTCATGGAACGAAGAGCAAGCTTCCACCTCTTGTGGTTGGGTTGCAAGACATTGGGC 663 ||||||||||||| |||||||| |||||| |||||||||| ||||||||||||||||||| Sbjct 64 GGGCTCATGGAACCAAGAGCAAACTTCCATCTCTTGTGGTGGGGTTGCAAGACATTGGGC 123 Query 664 TTCTTGTTTCACG-GATACATCACATGAATCATCACCGAGCACCGTATAACAACAATTAC 722 | ||||||||||| | ||||||| ||||||||||||||||||||||||| ||||||||| Sbjct 124 TGCTTGTTTCACGTG-TACATCATGTGAATCATCACCGAGCACCGTATAATAACAATTAC 182 Query 723 TGCGTAGTGAGTGGGGTGTGGAACAAGGTTTTGGATGAAAGCAATGTCTTTAAGGCAATG 782 ||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||| Sbjct 183 TGCGTAGTGAGTGGGGTTTGGAACAAGGTTTTGGATGAAAGCAAGGTCTTTGAGGCAATG 242 Query 783 GAGATGGTGTTGTATATCCAACTTGGGG-TGAGACCGAGGTCATGGACCGAGCCAAACTA 841 ||||||||||| ||| || || ||||| |||||||||||||||||||||| |||||| Sbjct 243 GAGATGGTGTTATATTTC-AAGATGGGGGTGAGACCGAGGTCATGGACCGATTCAAACTC 301 Query 842 CGAATG-ACGGAAGAAACCGACATATCCAAATGTTAGCCGTCACTTTTAGCTATATTC 898 ||| || |||||| |||||||||||| ||||||||||| | ||||||||| ||||||| Sbjct 302 CGATTGGACGGAAAAAACCGACATATTCAAATGTTAGCGG-CACTTTTAGATATATTC 358 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35454312810 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5