BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22890.1
Length=955
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481151 jgi|Araly1|481151|fgenesh2_kg.4__211__AT2G22890.1 1293 0.0
Ahg931389 jgi|Araly1|931389|scaffold_303846.1 468 4e-131
> Ahg481151 jgi|Araly1|481151|fgenesh2_kg.4__211__AT2G22890.1
Length=897
Score = 1293 bits (700), Expect = 0.0
Identities = 838/904 (93%), Gaps = 11/904 (1%)
Strand=Plus/Plus
Query 4 CTTCAATGGCTACATCTCTTCAAACCAAA-TACACTCTAAATCCCATCACAAACAACATC 62
|||||||||| | | ||||||||| |||| |||||||||| ||| |||||||||||||||
Sbjct 1 CTTCAATGGCAATACCTCTTCAAA-CAAAGTACACTCTAAGTCCAATCACAAACAACATC 59
Query 63 CCAAGAAGCCACCGTCCATCGTTTCTCCGTGTCACTTCCACCACCAACTCTCAGCCTAAC 122
||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 60 CCAAGAAGCCACCGTCCGTCGCTTCTCCGTGTCACGTCCACCACCAACTCTCAGCCTAAC 119
Query 123 CATGAGATGAAGCTTGTTGTTGAGCAACGACTTGTGAATCCTCCTCTCTCCAACGACCCA 182
||| || |||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 120 CAT--GA-GAAGCTTGTTCTTGAGCAACGACTTGTGAATCCTCCTCTCTCCAACGACACA 176
Query 183 ACTCTACAATCTACATGGACTCACCGGTTATGGGTTGCAGCTGGCTGCACCACCGTGTTT 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 177 ACTCTACAATCTACATGGACTCACCGGTTATGGGTTGCAGCTGGCTGCACCACCGTCTTT 236
Query 243 GTCTCTTTTTCCAAATCAATCATTGGAGCATTTGGTTCTCATCTCTGGCTCGAACCATCT 302
||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 237 GTCTCTTTTGCCAAATCGATCATTGGAGCGTTTGGTTCTCATCTCTGGCTCGAACCAACT 296
Query 303 TTAGCCGGTTTCGCCGGGTA-TATCTTAGCAGATCTAGGTTCTGGTGTGTACCACTGGGC 361
||||||||||| |||||||| | ||||||||||||||||||||||||| |||||||||||
Sbjct 297 TTAGCCGGTTTTGCCGGGTACT-TCTTAGCAGATCTAGGTTCTGGTGTCTACCACTGGGC 355
Query 362 CACCGATAACTACGGTGATGAGTCTACGCCTCTAGTAGGAATCCATATCGAAGACTCTCA 421
|||||||||||||||||||||||| |||||||||||||| | |||||||||||| |||||
Sbjct 356 CACCGATAACTACGGTGATGAGTCAACGCCTCTAGTAGGGACCCATATCGAAGATTCTCA 415
Query 422 AGATCATCACAAGTGTCCATGGACAATCACCAAACGGCAATTTGCAAACAATCTACATTT 481
|||||| |||||||| || |||||||| ||| |||||||||||||||||||||||||||
Sbjct 416 AGATCACCACAAGTGGCCTTGGACAATAACCGGACGGCAATTTGCAAACAATCTACATTT 475
Query 482 TATGGCTCGAGGCACAACCTTGATAGTTCTCCCACTAGACCTTGCTTTTGATGACCATGT 541
|||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 476 TATGGCTCCAGGCACAACTTTGATAGTTCTCCCACTAGACCTTGCATTTGATGACCATGT 535
Query 542 GGTTCATGGCTTTGTAAGCATGTTTGCATTTTGTGTATTGTTTTGTCAGTTGTTCCATGC 601
| ||||||||||||||||||||||||||||| | ||||||||||||||| |||||||| |
Sbjct 536 GTTTCATGGCTTTGTAAGCATGTTTGCATTTAGCGTATTGTTTTGTCAGCTGTTCCATAC 595
Query 602 TTGGGCTCATGGAACGAAGAGCAAGCTTCCACCTCTTGTGGTTGGGTTGCAAGACATTGG 661
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 596 TTGGGCTCATGGAACCAAGAGCAAGCTTCCACCTCTTGTGGTGGGGTTGCAAGACATTGG 655
Query 662 GCTTCTTGTTTCACGGATACATCACATGAATCATCACCGAGCACCGTATAACAACAATTA 721
||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 656 GCTGCTTGTTTCACGGATACATCATGTGAATCATCACCGAGCACCGTATAATAACAATTA 715
Query 722 CTGCGTAGTGAGTGGGGTGTGGAACAAGGTTTTGGATGAAAGCAATGTCTTTAAGGCAAT 781
|||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||
Sbjct 716 CTGCGTAGTGAGTGGGGTTTGGAACAAGGTTTTGGATGAAAGCAAGGTCTTTGAGGCAAT 775
Query 782 GGAGATGGTGTTGTATATCCAACTTGGGG-TGAGACCGAGGTCATGGACCGAGCCAAACT 840
|||||||||||||||| || || ||||| |||||||||||||||||||||| ||||||
Sbjct 776 GGAGATGGTGTTGTATTTC-AAGATGGGGGTGAGACCGAGGTCATGGACCGATTCAAACT 834
Query 841 ACGAATG-ACGGAAGAAACCGACATATCCAAATGTTAGCCGTCACTTTTAGCTATATTCT 899
| |||| | ||||||||||||||||| ||||||||||| | ||||||||| ||||||||
Sbjct 835 CCTAATGGATGGAAGAAACCGACATATTCAAATGTTAGCGG-CACTTTTAGATATATTCT 893
Query 900 TCGC 903
||||
Sbjct 894 TCGC 897
> Ahg931389 jgi|Araly1|931389|scaffold_303846.1
Length=358
Score = 468 bits (253), Expect = 4e-131
Identities = 324/358 (91%), Gaps = 6/358 (2%)
Strand=Plus/Plus
Query 544 TTCATGGCTTTGTAAGCATGTTTGCATTTTGTGTATTGTTTTGTCAGTTGTTCCATGCTT 603
||||||||||||||||||||||||||||| | || |||||||||||| |||||||| |||
Sbjct 4 TTCATGGCTTTGTAAGCATGTTTGCATTTAGCGTGTTGTTTTGTCAGCTGTTCCATACTT 63
Query 604 GGGCTCATGGAACGAAGAGCAAGCTTCCACCTCTTGTGGTTGGGTTGCAAGACATTGGGC 663
||||||||||||| |||||||| |||||| |||||||||| |||||||||||||||||||
Sbjct 64 GGGCTCATGGAACCAAGAGCAAACTTCCATCTCTTGTGGTGGGGTTGCAAGACATTGGGC 123
Query 664 TTCTTGTTTCACG-GATACATCACATGAATCATCACCGAGCACCGTATAACAACAATTAC 722
| ||||||||||| | ||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 124 TGCTTGTTTCACGTG-TACATCATGTGAATCATCACCGAGCACCGTATAATAACAATTAC 182
Query 723 TGCGTAGTGAGTGGGGTGTGGAACAAGGTTTTGGATGAAAGCAATGTCTTTAAGGCAATG 782
||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||
Sbjct 183 TGCGTAGTGAGTGGGGTTTGGAACAAGGTTTTGGATGAAAGCAAGGTCTTTGAGGCAATG 242
Query 783 GAGATGGTGTTGTATATCCAACTTGGGG-TGAGACCGAGGTCATGGACCGAGCCAAACTA 841
||||||||||| ||| || || ||||| |||||||||||||||||||||| ||||||
Sbjct 243 GAGATGGTGTTATATTTC-AAGATGGGGGTGAGACCGAGGTCATGGACCGATTCAAACTC 301
Query 842 CGAATG-ACGGAAGAAACCGACATATCCAAATGTTAGCCGTCACTTTTAGCTATATTC 898
||| || |||||| |||||||||||| ||||||||||| | ||||||||| |||||||
Sbjct 302 CGATTGGACGGAAAAAACCGACATATTCAAATGTTAGCGG-CACTTTTAGATATATTC 358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35454312810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5