BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22900.1
Length=1583
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481152 jgi|Araly1|481152|fgenesh2_kg.4__212__AT2G22900.1 2222 0.0
> Ahg481152 jgi|Araly1|481152|fgenesh2_kg.4__212__AT2G22900.1
Length=1464
Score = 2222 bits (1203), Expect = 0.0
Identities = 1386/1471 (94%), Gaps = 25/1471 (2%)
Strand=Plus/Plus
Query 120 ATCATCACATTACCAATCATCTCCAATGGCAAAATACGCCGGAACAAGAACCAGACCGGT 179
|||||| |||| |||||||||||| |||||||||||||||||| ||||||| ||||||||
Sbjct 1 ATCATCGCATTTCCAATCATCTCCGATGGCAAAATACGCCGGAGCAAGAACAAGACCGGT 60
Query 180 TGTATGTATCTCCGACGTCGTTCTCTTCCTTGGCGGAGCTTTCATGTCACTAATCCTCGT 239
||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 61 CATATGTTTCTCCGACGTCGTTCTCTTCCTCGGCGGAGCTTTCATGTCTTTAATCCTCGT 120
Query 240 CTGGTCTTTCTTCTCCTTCTCTTCAATCTCCCCAAATCTCACCGTGAAAAACGAA-GAAT 298
|||||| ||| |||||||||||||| | || |||||||||||||| ||||| || ||||
Sbjct 121 CTGGTCATTCCTCTCCTTCTCTTCACTTTCACCAAATCTCACCGT-CAAAACCAACGAAT 179
Query 299 CCTCCAACAAATGTTCTTCAGGAATCGATATG-AGCCAAGATCCAACCGACCCGGTTTAC 357
||||| |||||||||| ||| |||||| ||| || | |||||||||||||||||||||
Sbjct 180 CCTCCGCCAAATGTTCTCCAGAAATCGACATGAAG-TACGATCCAACCGACCCGGTTTAC 238
Query 358 TACGACGACCCGGATCTAACCTACACAATCGAAAAACCGGTTAAAAACTGGGACGAGAAA 417
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 239 TACGACGAGCCGGATCTAACCTATACAATCGAAAAACCGGTTAAAAACTGGGACGAGAAA 298
Query 418 CGAAGACGTTGGTTAAATCTACACCCTTCGTTTATCCCCGGAGCTGAGAATCGTACGGTT 477
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 299 CGAAGACGTTGGTTAAATCTACACCCTTCGTTTATCACCGGAGCTGAGAATCGTACGGTT 358
Query 478 ATGGTAACAGGATCACAATCTGCGCCGTGTAAAAACCCAATCGGAGATCATTTGTTGCTT 537
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 359 ATGGTAACCGGATCACAATCGGCGCCGTGTAAAAACCCAATCGGAGATCATTTGTTG-TT 417
Query 538 -CGATTTTTTAAGAACAAAGTTGATTATTGTCGGATCCATGGTCATGATATATTCTATAG 596
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 418 ACGATTTTTTAAGAACAAAGTTGATTATTGTCGGATGCATGGTCATGATATATTCTATAG 477
Query 597 TAACGCTCTTCTTCATCCGAAGATGAATTCTTATTGGGCGAAACTTCCGGCGGTTAAAGC 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TAACGCTCTTCTTCATCCGAAGATGAATTCTTATTGGGCGAAACTTCCGGCGGTTAAAGC 537
Query 657 GGCGATGATTGCTCATCCTGAGGCGGAGTGGATCTGGTGGGTTGATTCTGATGCTTTGTT 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GGCGATGATTGCTCATCCTGAGGCGGAGTGGATCTGGTGGGTTGATTCTGATGCTTTGTT 597
Query 717 TACGGATATGGATTTTACGCCGCCGTGGCGA-CGGTATAAGGAGCATAATCTTGTTGTTC 775
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 598 TACGGATATGGATTTTACGCCGCCGTGGC-ATCGGTATAAGGAGCATAATCTTGTTGTTC 656
Query 776 ATGGTTGGCCGGGAGTGATTTATAATGATCGGAGCTGGACGGCGTTAAACGCCGGAGTTT 835
|||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||
Sbjct 657 ATGGTTGGCCGGGAGTGATTTACAATGATCGGAGTTGGACGGCGTTGAACGCCGGCGTTT 716
Query 836 TTCTCATTAGGAATTGTCAGTGGTCTATGGAACTCATTGACACGTGGACAGGTATGGGAC 895
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 717 TCCTCATTAGGAATTGTCAGTGGTCTATGGAGCTCATTGACACGTGGACAGGTATGGGAC 776
Query 896 CAGTGAGTCCAGAGTACGCAAAATGGGGACAAATCCAACGGTCAATATTCAAAGACAAAC 955
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 777 CAGTGAGTCCAGAGTACGCTAAATGGGGACAAATCCAACGGTCAATATTCAAAGACAAAC 836
Query 956 TCTTCCCAGAGTCAGATGATCAAACGGCTCTGCTTTACTTACTCTACAAACACAGAGAAG 1015
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 837 TCTTCCCAGAGTCAGACGATCAAACGGCTCTGATTTACTTACTCTACAAACACAGAGAAG 896
Query 1016 TGTATTATCC-AAAGATATACCTCGAAGGAGACTTTTATTTCGAAGGATATTGGTTAGAG 1074
| |||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 897 TCTATTATCCCAAA-ATATACCTCGAAGGAAACTTTTATTTCGAAGGATATTGGTTAGAG 955
Query 1075 ATCGTACCGGGTTTATCCAACGTAACGGAACGGTATCTGGAGATGGAAAGAGAAGACGCC 1134
||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 956 ATCGTACCGGGTTTAACCAACGTAACGGAACGGTATCTAGAGATGGAACGAGAAGACGCC 1015
Query 1135 ACGTTGCGTAGACGACACGCAGAGAAAGTGAGCGAACGATACGCTGCGTTTCGTGAGGAA 1194
|||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1016 ACGTTGCGTAGACGTCACGCAGAGAAAGTGAGTGAACGATACGGTGCGTTTCGTGAGGAA 1075
Query 1195 CGGTTTTTAAAAGGAGAAAGAGGCGGGAAAGGAAGCAAACGGAGACCGTTCGTGACGCAT 1254
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1076 CGGTTTTTAAAAGGAGAAAGAGGCGGGAAAGGAAGTAAACGGAGACCGTTCGTGACGCAT 1135
Query 1255 TTTACGGGATGTCAACCTTGTAGTGGTGATCATAACAAGATGTACGATGGTGACACGTGT 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 TTTACGGGATGTCAACCTTGTAGTGGTGATCATAACAAGATGTACGATGGTGACACGTGT 1195
Query 1315 TGGAATGGGATGATCAAAGCCATTAATTTCGCTGATAATCAAGTGATGCGTAAATATGGT 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1196 TGGAATGGGATGATCAAAGCCATTAATTTCGCTGATAATCAAGTGATGCGTAAGTATGGT 1255
Query 1375 TTCGTACACTCGGATCTAGGCAAGACTTCCCCTCTTCAACCTGTACCGTTCGATTATCCT 1434
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 1256 TTCGTACACTCGGATCTAGGGAAGACTTCCCCTCTTCAACCTCTACCGTTCGATTATCCT 1315
Query 1435 GATGAGCCTTGGTGAAATAA---------TTGTGTTTTGTTGTTTTAT--AAACTCTTTA 1483
||||||||||||||||| || |||||||||| |||||| | ||||||||||
Sbjct 1316 GATGAGCCTTGGTGAAAAAAAAAAACAAATTGTGTTTTGCTGTTTTTTTTAAACTCTTTA 1375
Query 1484 GATGTGCTTTTATAATGAGTT-GATTATTATAATCCATGAAGTGAAAGGTTTATAATGCG 1542
||||||||||||||||||||| | ||||||||||||||||| ||||||||||||| |||
Sbjct 1376 GATGTGCTTTTATAATGAGTTTG-TTATTATAATCCATGAATTGAAAGGTTTATACTGCA 1434
Query 1543 GAATCTTTTTGAATAAT-TCAATGATTATTG 1572
||| |||||||||| || | |||||||||||
Sbjct 1435 GAAGCTTTTTGAATTATAT-AATGATTATTG 1464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59306511465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5