BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22905.1
Length=772
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481153 jgi|Araly1|481153|fgenesh2_kg.4__213__AT2G22905.1 665 0.0
> Ahg481153 jgi|Araly1|481153|fgenesh2_kg.4__213__AT2G22905.1
Length=658
Score = 665 bits (360), Expect = 0.0
Identities = 471/524 (90%), Gaps = 10/524 (2%)
Strand=Plus/Plus
Query 147 AATCACCTATCATTTGATTTTGATCTTGTAC-AAAATAAATGGCAAATTGCAGAACTCC- 204
||||| ||||||||| |||||||||||||| |||||||||||||| ||| ||| | ||
Sbjct 140 AATCATCTATCATTTTCTTTTGATCTTGTACAAAAATAAATGGCAAGTTGTAGATC-CCG 198
Query 205 ACGACCGTGCGTTGGCAAGCTCAGCCGCGGCGTGGTTTGGGAAAACTCCGATTTTCGGTC 264
|| |||||| ||||| | ||| |||||||||| ||||| ||||||||| | |||||||||
Sbjct 199 ACCACCGTGTGTTGGTACGCTAAGCCGCGGCGAGGTTTCGGAAAACTCTGGTTTTCGGTC 258
Query 265 TGA-ACCTCCAGGTTCTTGGGGATGTCCGAAGCAAATGAGACACAATCACGTGTCTTCTT 323
| | ||| || |||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 259 T-AGACCGCCCGGTTCTTGGGGATGTCCGAAGCAAATGAGACAAAATCATGTGTCTTCTT 317
Query 324 CGACAACGGAGCATCAACGACGAAGCTGGACCAACGCTAACGGTAAAGAAACAAAGAGCC 383
|||||| | ||| ||||||||||||||||||||| | ||| || ||| | ||||||||
Sbjct 318 CGACAA--G-GCAGCAACGACGAAGCTGGACCAACACCAACAGTGGAGAGAGAAAGAGCC 374
Query 384 ATTCCAATTTTGCAGACTCTGGTGGGATTGTTGCGGTGGAGGAAGCGGAGTTAGTGGCAG 443
||||| |||||| |||||| |||||| ||||||||| ||| ||||||||||||||||| |
Sbjct 375 ATTCCTATTTTGGAGACTCCGGTGGGGTTGTTGCGGCGGATGAAGCGGAGTTAGTGGCGG 434
Query 444 TGTTGAGGGAGGCTCATCCGTACGTGAATTTACATAGAGACAGTAAATTTGTCGTTATGT 503
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 435 TGCTGAGGGAGGCTCATCCGTACGTGAATTTACATAGAGACTGTAAATTTGTCGTTATGT 494
Query 504 TGTCGGCTGAGCTACTTGACTCCGGTTCGACCCTCGACGGCATTCTCAAGGTCATTACTA 563
||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||
Sbjct 495 TGTCGGCTGAGCTACTTGACTCCGGTTCGACACTCGATGGCATTCTCAAGGTCGTTACTA 554
Query 564 TTTACT-CTTTTCACATTACTAGATTCCAAAAAA-GACAAAACGCGTGACTCGTGAGCAA 621
|||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 555 TTTACTGCTTTTCACATTACTGGATTCCAAAAAAAGACAAAACGCGTGACTCGTGAGCAA 614
Query 622 GAAATGCATCACTCAAATAATTTCTAAAATAATATCATAGTAAT 665
|||||| |||||| |||||||||||||||||||||| |||||||
Sbjct 615 GAAATGGATCACTGAAATAATTTCTAAAATAATATCCTAGTAAT 658
Score = 108 bits (58), Expect = 8e-23
Identities = 116/140 (83%), Gaps = 20/140 (14%)
Strand=Plus/Plus
Query 1 TCGCTCTATTATCTCATTACACATTTTCTTATAATTTTCTCA---T-A-TTCTC-----t 50
||||||||||||||||||||||||| |||||||| ||||||| | | ||||| |
Sbjct 1 TCGCTCTATTATCTCATTACACATTATCTTATAAATTTCTCATTTTCATTTCTCTTTTAT 60
Query 51 tt-ttttGTCTAATTATA-A---T-----TATTTGTTTCATTGATTTATCACAAGAGTCT 100
|| ||||||||||||||| | | ||||||||| |||||||||||||||||||||
Sbjct 61 TTATTTTGTCTAATTATATATTTTACAACTATTTGTTTTATTGATTTATCACAAGAGTCT 120
Query 101 TCGAACAAGAGAAAGAAAAA 120
|||||||||||| |||||||
Sbjct 121 TCGAACAAGAGAGAGAAAAA 140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28477818999
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5