BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22910.1
Length=2075
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481154 jgi|Araly1|481154|fgenesh2_kg.4__214__AT2G22910.1 3157 0.0
Ahg490852 jgi|Araly1|490852|fgenesh2_kg.7__285__AT4G37670.2 1544 0.0
Ahg932264 jgi|Araly1|932264|scaffold_400252.1 324 2e-87
> Ahg481154 jgi|Araly1|481154|fgenesh2_kg.4__214__AT2G22910.1
Length=2013
Score = 3157 bits (1709), Expect = 0.0
Identities = 1876/1958 (96%), Gaps = 5/1958 (0%)
Strand=Plus/Plus
Query 98 AATTCCTTCCATAAATTTCGAAATGACAGAGCGTGGAGCTATGGTGGTATCGTCTTCTAC 157
||||||||||| ||||| |||||||| ||||| |||||||||||||| || ||||||||
Sbjct 58 AATTCCTTCCACGAATTTTGAAATGACGGAGCGAGGAGCTATGGTGGTTTCTTCTTCTAC 117
Query 158 CTGTTACGTTCCTTTTCGATGTCCTCAAGCAAGAAAAGATTTTGCTTTCGTCGAGCCGAG 217
|| ||| |||||||||||||||||||| ||||||| |||||| ||||| ||||||||||
Sbjct 118 CTCATACCTTCCTTTTCGATGTCCTCAAACAAGAAAGGATTTTTCTTTCTTCGAGCCGAG 177
Query 218 TAAGAAGCTAAACCCTAATCGTGTATTGATAAAGCCTCCGGT-TTAC-ACGTATTCTCCG 275
|||||||||||||||||||||| ||| |||||| |||| || || | | | |||||||
Sbjct 178 TAAGAAGCTAAACCCTAATCGTCAATTAATAAAGTCTCC-GTCTT-CTATATCTTCTCCG 235
Query 276 GCACTGACGGCGGCGAAATGTAACATTTTTGATTACGCGGAAACTGGTGAGAATTTGGTC 335
|||||||| |||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 236 CCACTGACGCCGGCGAAATGCAATATGTTTGATTACGCGGAAACTGGTGAGAATTTGGTC 295
Query 336 GGCGATAAGCAATTTGTGCGGTGGTTTCGTGAAGCTTGGCCTTATTTGTGGGCTCATCGT 395
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 296 GGCGATAAGCAGTTTGTGCGGTGGTTTCGTGAAGCTTGGCCTTATCTGTGGGCTCATCGT 355
Query 396 AGCTGTACCTTCGTCGTTACTATCTCCGGCGATGTCTTAGACGGCCCTTATTGTGATCTC 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 AGCTGTACCTTCGTCGTTACTATCTCCGGCGATGTCTTAGACGGCCCTTATTGTGATCTC 415
Query 456 GTTTTAAAGGACATAGCATTTCTTCATCATCTGGGCATTAAGTTTGTTCTAGTTCCTGGA 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 GTTTTAAAGGACATAGCATTTCTTCATCATCTGGGCATTAAGTTTGTTCTAGTTCCTGGA 475
Query 516 ACTCAAGTGCAAATCGACCAGCTTCTAGCTGAGAGAGGACGCGAGCCTACATATGTAGGT 575
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 476 ACTCAAGTGCAAATCGACCAGCTTCTAGCTGAGAGAGGACGCGAGCCTACATATGTGGGT 535
Query 576 CGTTACAGAGTCACAGACTCAGCATCTCTTCAGGCTGCTAAGGAAGCTGCGGGAGCAATA 635
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 536 CGTTACAGAGTCACAGACTCAGCATCTCTGCAGGCTGCCAAGGAAGCTGCGGGAGCAATA 595
Query 636 TCTGTAATGATTGAGGCCAAACTATCTCCCGGACCTTCTATTTACAATATACGCCGACAT 695
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 596 TCTGTAATGATTGAAGCCAAACTATCTCCCGGACCTTCCATTTACAATATACGCCGACAT 655
Query 696 GGTGATAGTAGTCGTTTGCATGAAACAGGCGTTAGGGTCGATACTGGTAACTTCTTTGCA 755
||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 656 GGTGATAGTAGTCGTTTGCATGAAACAGGTGTTAGGGTGGATACTGGCAACTTCTTTGCA 715
Query 756 GCAAAGAGAAGAGGTGTTGTTGATGGTGTTGATTTTGGAGCAACTGGTTTAGTGAAGAAG 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 GCAAAGAGAAGAGGTGTTGTTGATGGTGTTGATTTTGGAGCAACTGGTTTAGTGAAGAAG 775
Query 816 ATAGATGTAGATCGAATCCGTGAGAGGCTTGATAGTGGTTCTGTAGTTTTATTGAGGAAC 875
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 ATAGATGTAGATCGGATCCGTGAGAGGCTTGATAGTGGTTCTGTAGTTTTATTGAGGAAC 835
Query 876 TTGGGCCATTCCAGCACCGGAGAAGTCTTAAATTGCAATACCTATGAGGTTGCTACAGCA 935
||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 836 TTGGGCCATTCCAGCTCCGGCGAAGTCTTAAATTGCAATACCTATGAGGTTGCGACAGCA 895
Query 936 TGTGCTTTAGCTATAGGAGCAGATAAGCTTATTTGCATAATGGATGGTCCAGTTCTTGAT 995
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 896 TGTGCTTTAGCTATAGGAGCAGATAAGCTTATTTGCATAATGGATGGTCCAATTCTTGAT 955
Query 996 GAGAATGGACATCTTGTTCGGTTCTTGACTCTTCAGGAAGCAGATACATTAGTCAGAAAA 1055
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 956 GAGAATGGACATCTTGTTCGGTTCTTGACTCTTCAGGAAGCAGATACGTTAGTCAGAAAA 1015
Query 1056 CGGGCACAGCAAAGCGAGATCGCTGCCAATTACGTGAAGGCTGTTGGGGATGGAGGCATA 1115
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CGGGCACAGCAAAGCGAGATAGCTGCCAATTACGTGAAGGCTGTTGGGGATGGAGGCATA 1075
Query 1116 AGTAGTTTTCCTGAACCTCTTGGTTACAATGGTATGGTGACGACTCCCAACAATCATATT 1175
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1076 AGTAGTTTTCCTGAACCTCTTGGTTACAATGGGATGGTGACGACTCCCAACAATCATATT 1135
Query 1176 GGGAGACCGATTTGGGAAAAACTCAGTCCGACCTTTCAGAATGGTGTTGGATTTGACAAC 1235
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1136 GGGAGACCGATTTGGGAAAAACACACTCCGACCTTTCAGAATGGTGTTGGATTTGACAAC 1195
Query 1236 GGAAATGGGTTGTGGTCTGGGGAGCAAGGTTTTGCTATTGGCGGTGAGGAGAGAATTAGC 1295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 GGAAATGGGTTGTGGTCTGGGGAGCAAGGTTTTGCTATTGGCGGTGAGGAGAGAATTAGC 1255
Query 1296 CGTTTGAATGGATATCTCTCTGAACTGGCTGCAGCAGCGTTCGTTTGCAGAGGTGGTGTC 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 CGTTTGAATGGATATCTCTCTGAACTGGCTGCAGCAGCGTTCGTTTGCAGAGGTGGTGTC 1315
Query 1356 AAAAGAGTTCACTTATTGGATGGTACTATAAGTGGAGTGCTATTGTTGGAGCTTTTCAAA 1415
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 AATAGAGTTCACTTATTGGATGGTACTATAAGTGGAGTGCTATTGTTGGAGCTTTTCAAA 1375
Query 1416 AGAGATGGAATGGGGACTATGGTGGCAAGTGATGTATATGAAGGAAACCGGGAGGCGAAA 1475
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1376 AGAGATGGAATGGGGACTATGGTGGCAAGTGATGTATATGAAGGAACCCGGGAGGCGAAA 1435
Query 1476 GTGGAAGATCTTGCTGGAATAAGACAAATAATCAAACCCCTGGAAGAATCTGGGGCTTTA 1535
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1436 GTGGAAGATCTTGCTGGAATAAGACAAATAATCAAACCCTTAGAAGAATCTGGGGCTTTA 1495
Query 1536 GTTCGTAGAACTGATGAGGAGCTTCTGCGAGCTTTGGATTCGTTTGTGGTTGTGGAAAGG 1595
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1496 GTTCGTAGAACTGATGAGGAGCTACTGCGAGCTTTGGATTCGTTTGTGGTTGTGGAACGA 1555
Query 1596 GAAGGACATATTATCGCTTGCGCGGCTTTGTTCCCTTTCTTTGAAGAAAAATGTGGAGAA 1655
|||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1556 GAAGGACAGATTATCGCTTGTGCGGCTTTGTTCCCTTTCTTTGAAGACAAATGTGGAGAA 1615
Query 1656 GTTGCAGCTATCGCAGTTGCATCAGATTGCCGTGGACAAGGCCAGGGAGATAAATTGCTC 1715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 GTTGCAGCTATCGCAGTTGCATCAGATTGCCGTGGACAAGGCCAGGGAGATAAATTGCTC 1675
Query 1716 GATTACATTGAGAAGAAAGCGTCAGCTCTTGGACTTGAGATGCTATTTCTGCTGACAACG 1775
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1676 GATTACATTGAGAAGAAAGCGTCAGCTCTTGGACTCGAGATGCTTTTTCTGCTGACAACG 1735
Query 1776 AGAACCGCGGACTGGTTTGTGAGACGCGGGTTTCAGGAATGTCCAATCGAGATGATACCA 1835
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1736 AGAACCGCAGACTGGTTTGTGAGACGTGGGTTTCAGGAATGTCCAATCGAGATGATACCA 1795
Query 1836 GAGGCAAGACGGGAAAGAATCAATCTTTCGAGGAGATCAAAGTATTACATGAAGAAGCTG 1895
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1796 GAGGCAAGACGGGAAAGAATCAATCTTTCGAGGAGATCGAAGTATTACATGAAGAAGTTG 1855
Query 1896 TTGCCAGACAGGAGTGGAATTTCTGTTGTTCGAACATTTCAGTATGATTCTTGAGAGTGT 1955
||||||||||||||||| || ||||||||||||||||||||||||| |||||||| ||||
Sbjct 1856 TTGCCAGACAGGAGTGGGATATCTGTTGTTCGAACATTTCAGTATGGTTCTTGAGTGTGT 1915
Query 1956 CCAGAAGCAGAAAATTCAAACATAGAGCAAA-TAAAATGTAATTGACACAGAAACATTTA 2014
| ||||| |||| || |||||| ||||||| ||||||||||||||| |||||| |||||
Sbjct 1916 CGAGAAGAAGAAGATCCAAACACAGAGCAACCTAAAATGTAATTGACGCAGAAAGATTTA 1975
Query 2015 GCTGAATCTCTAAGATTCTGCTGAGTTTTGAATCAATA 2052
| |||||||||||||||| ||||||||||||||||||
Sbjct 1976 TCCGAATCTCTAAGATTCTACTGAGTTTTGAATCAATA 2013
Score = 110 bits (59), Expect = 6e-23
Identities = 61/62 (98%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11 GAATACTTTTCTTCTTCCTCCACCGATCATCCGCCATTGTTACCCAATTTTGCTCTGAAT 70
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 GAATACTTTTCTTCTTCCTCCACCGATCATCCGCCATTGTTACCCAATTATGCTCTGAAT 60
Query 71 TC 72
||
Sbjct 61 TC 62
> Ahg490852 jgi|Araly1|490852|fgenesh2_kg.7__285__AT4G37670.2
Length=1924
Score = 1544 bits (836), Expect = 0.0
Identities = 1364/1614 (85%), Gaps = 55/1614 (3%)
Strand=Plus/Plus
Query 338 CGATAAGCAATTTGTGCGGTGGTTTCGTGAAGCTTGGCCTTATTTGTGGGCTCATCGTAG 397
||| || || |||||||| |||||||||||||| ||||||||| |||||||||| ||| |
Sbjct 237 CGACAAACAGTTTGTGCGTTGGTTTCGTGAAGCCTGGCCTTATCTGTGGGCTCACCGTGG 296
Query 398 CTGTACCTTCGTCGTTACTATCTCCGGCGATG-TCTTAGACGGCCCTTATTGTGATCTCG 456
||| || |||||||||| |||||||||||| | || | | |||| ||| |||||||| |
Sbjct 297 CTGCACATTCGTCGTTATTATCTCCGGCGA-GATCATCGCCGGCTCTTCTTGTGATCCCA 355
Query 457 TTTTAAAGGACATAGCATTTCTTCATCATCTGGGCATTAA-GTTTGTTCTAGTTCCTGGA 515
|||| ||||||||||| |||||||||||||| || | ||| ||||||| |||||||||||
Sbjct 356 TTTTGAAGGACATAGCGTTTCTTCATCATCTAGG-AATAAGGTTTGTTTTAGTTCCTGGA 414
Query 516 ACTCAAG-TGCAAATCGACCAGCTTCTAG-CTGAGAGAGGACGCGA-GCCTACATATGTA 572
||||||| | ||||||||| ||||||| | |||||||||||||||| ||| ||||||||
Sbjct 415 ACTCAAGAT-CAAATCGACGAGCTTCT-GTCTGAGAGAGGACGCGAGGCC-ACATATGTG 471
Query 573 GGTCGTTACAGAGTCACAGACT-CAGCATCTCTT-CAGGCTGCTAAGGAAGCTGCGGGAG 630
|||||||||||||| || || | |||||||| || |||||||| || |||||||| ||||
Sbjct 472 GGTCGTTACAGAGTAACGGA-TGCAGCATCT-TTGCAGGCTGCCAAAGAAGCTGCAGGAG 529
Query 631 CAATATCTGTAATGATTGAGGCCAAACTATCTCCCGGACCTTCTATTTACAATATACGCC 690
||||||| || ||| ||||||||||||||||||| |||||||| |||| |||||| ||
Sbjct 530 CAATATCAGTGATGCTTGAGGCCAAACTATCTCCTGGACCTTCCATTTGCAATATCCGTA 589
Query 691 GACATGGTGATAGTAGTCGTTTGCATGAAACAGGCGTTAGGGTCGATACTGGTAACTTCT 750
|||| |||||| |||||||||| ||||| | ||| |||||||| ||||||||||||||||
Sbjct 590 GACACGGTGATCGTAGTCGTTTACATGATATAGGTGTTAGGGTTGATACTGGTAACTTCT 649
Query 751 TTGCAGCAAAGAGAAGAGGTGTTGTTGATGGTGTTGATTTTGGAGCAACTGGTTTA-GTG 809
|||||||||| ||||||||||||||||| ||||||||||||||||| || || | | ||
Sbjct 650 TTGCAGCAAAAAGAAGAGGTGTTGTTGACGGTGTTGATTTTGGAGCGACAGG-TGAGGTA 708
Query 810 AAGAAGATAGATGTAGATCGAATCCGTGAGAGGCTTGATAGTGGTTCTGTAGTTTTATTG 869
|||||||||||||||||||| || ||||||||||||| |||||||| ||||||| |||
Sbjct 709 AAGAAGATAGATGTAGATCGGATTTGTGAGAGGCTTGACGGTGGTTCTATAGTTTTGTTG 768
Query 870 AGGAACTTGGGCCATTCCAGCACCGGAGAAGTCTTAAATTGCAATACCTATGAGGTTGCT 929
|||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 769 AGGAACTTGGGCCACTCTAGCTCCGGAGAAGTCTTAAATTGCAATACCTATGAGGTTGCT 828
Query 930 ACAGCATGTGCTTTAGCTATAGGAGCAGATAAGCTTATTTGCATAATGGATGGTCCAGTT 989
||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| ||
Sbjct 829 ACAGCTTGTGCTTTAGCTATAGGAGCAGATAAGCTAATTTGCATAATGGACGGTCCAATT 888
Query 990 CTTGATGAGAATGGACATCTTGTTCGGTTCTTGACTCTTCAGGAAGCAGATACATTAGTC 1049
|||||||||| |||||||||| |||| |||||||| ||||| |||||||||| |||||
Sbjct 889 CTTGATGAGAGTGGACATCTTATTCGTTTCTTGACACTTCAAGAAGCAGATATGTTAGTT 948
Query 1050 AGAAAACGGGCACAGCAAAGCGAGATCGCTGCCAATTACGTGAAGGCTGTTGGGGATGGA 1109
|||||||| || || || || || || ||||| |||||||||||||| ||||| ||||||
Sbjct 949 AGAAAACGTGCTCAACAGAGTGACATAGCTGCAAATTACGTGAAGGCCGTTGGAGATGGA 1008
Query 1110 GGCATAAGTAGTTTTCCTGAACCTCTTGGTTACA--ATG--GTATGGTGACGACTCC-CA 1164
| || | | || ||| ||||||| | ||| | | ||| | || |||| ||
Sbjct 1009 AGTAT--G-ACTTATCCCGAACCTCCTAACAACACCA-GCAGTAACATTACTTCTCCTCA 1064
Query 1165 ACAATCATATTGGGAGACC-G-ATTT-GGG-AAA---AA-CT-CAGTCCGACCTTTCAGA 1215
| || | |||||| | | |||| ||| ||| || | || |||| ||||||||
Sbjct 1065 A-AA-C-----GGGAGAGCAGCATTTTGGGGAAACGGAAACCACACTCCGGTCTTTCAGA 1117
Query 1216 ATGGTGTTGGATTTGACAACGGAAATGGGTTGTGGTCTGGGGAGCAAGGTTTTGCTATTG 1275
| ||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 1118 ACGGTGTTGGATTTGACAACGGAAACGGATTGTGGTCTGGTGAGCAAGGTTTTGCTATTG 1177
Query 1276 GCGGTGAGGAGAGAATTA-GCCGTTTGAATGGATATCTCTCTGAACTGGCTGCAGCAGCG 1334
| |||||||| ||| ||| |||| || || || ||||| |||||| ||||||| || |||
Sbjct 1178 GTGGTGAGGAAAGA-TTAAGCCGCTTAAACGGTTATCTTTCTGAATTGGCTGCTGCGGCG 1236
Query 1335 TTCGTTTGCAGAGGTGGTGTCAAAAGAGTTCACTTATTGGATGGTACTATAAGTGGAGTG 1394
||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1237 TTCGTCTGCAGAGGTGGAGTCAAAAGAGTTCACTTGTTGGATGGTACTATAAGTGGAGTT 1296
Query 1395 CTATTGTTGGAGCTTTTCAAAAGAGATGGAATGGGGACTATGGTGGCAAGTGATGTATAT 1454
|||||| |||||||||||||||||||||||||||| |||||||| || |||||||| ||
Sbjct 1297 CTATTGCTGGAGCTTTTCAAAAGAGATGGAATGGGAACTATGGTTGCTAGTGATGTTTAC 1356
Query 1455 GAAGGAAACCGGGAGGCGAAAGTGGAAGATCTTGCTGGAATAAGACAAATAATCAAACCC 1514
||||||| |||||| || | |||||||||||||| ||||| ||||| ||||||||||||
Sbjct 1357 GAAGGAACCCGGGATGCCAGAGTGGAAGATCTTGAAGGAATTAGACATATAATCAAACCC 1416
Query 1515 CTGGAAGAATCTGGGGCTT-TAGTTCGTAGAACTGATGAGGAGCTT-CTGCGAGCTTTGG 1572
|||| ||||| ||| || ||||||| ||||||||||||||| || |||||||| ||||
Sbjct 1417 TTGGAGGAATCAGGGA-TTCTAGTTCGCAGAACTGATGAGGAG-TTACTGCGAGCCTTGG 1474
Query 1573 ATTCGTTTGTGGTTGTGGAAAGGGAAGGACATATTATCGCTTGCGCGGCTTTGTTCCCTT 1632
|||| ||||||||||||||||||||||| || || |||||||| ||||||||||| || |
Sbjct 1475 ATTCATTTGTGGTTGTGGAAAGGGAAGGTCAGATCATCGCTTGTGCGGCTTTGTTTCCGT 1534
Query 1633 TCTTTGAAGAAAAATGTGGAGAAGTTGCAGCTATCGCAGTTGCATCAGATTGCCGTGGAC 1692
||||| |||| ||||| |||||||||||||| ||||| |||||||||||||| || || |
Sbjct 1535 TCTTTCAAGACAAATGCGGAGAAGTTGCAGCAATCGCGGTTGCATCAGATTGTCGCGGTC 1594
Query 1693 AAGGCCAGGGAGATAAATTGCTCGATTACATTGAGAAGAAAGCGTCAG-CTCTTGGACTT 1751
||||||| ||||||||||||||||||||||| ||||||||||| || | |||| || ||
Sbjct 1595 AAGGCCAAGGAGATAAATTGCTCGATTACATAGAGAAGAAAGCTTC-GTCTCTCGGG-TT 1652
Query 1752 -GAGATGCTATTTCTGCTGACAACGAGAACCGCGGACTGGTTTGTGAGACGCGGGTTTCA 1810
|| | ||| || || || ||||| |||| || |||||||| |||||||||||||| ||
Sbjct 1653 AGAAAAGCTGTTCCTACTCACAACCCGAACAGCAGACTGGTTCGTGAGACGCGGGTTCCA 1712
Query 1811 GGAATGTCCAATCGAGATGATACCAGAG-GCAAGACGGGAAAGAATCAATCTTTCGAGGA 1869
|||||| |||||||||| ||||||||| | | || | | ||||||||||| || || |
Sbjct 1713 AGAATGTTCAATCGAGATCATACCAGAGAGTA-GAAGACAGAGAATCAATCTATCTAGAA 1771
Query 1870 GATCAAAGTATTACATGAAGAAGCTGT-TGCCAGACAGGAGTGGAATTTCTGTT 1922
|||||||||||||| |||||| || | | || || || ||||| ||||| |||
Sbjct 1772 AATCAAAGTATTACACGAAGAAACT-TCTACCTGATAGAAGTGGCATTTCAGTT 1824
> Ahg932264 jgi|Araly1|932264|scaffold_400252.1
Length=320
Score = 324 bits (175), Expect = 2e-87
Identities = 210/227 (93%), Gaps = 2/227 (1%)
Strand=Plus/Plus
Query 626 GGGAGCAATATCTGTAATGATTGAGGCCAAACTATCTCCCGGACCTTCTATTTACAATAT 685
||||||||||||| | |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 27 GGGAGCAATATCTTTGATGATTGAAGCCAAACTATCTCCCGGACCTTCCATTTACAATAT 86
Query 686 ACGCCGACATGGTGATAGTAGTCGTTTGCATGAAACAGGCGTTAGGGTCGATACTGGTAA 745
|||||||||||||||||||||| || ||||||||||||| ||||| ||||| |||||||
Sbjct 87 ACGCCGACATGGTGATAGTAGTTGTCTGCATGAAACAGGTGTTAGAGTCGACACTGGTAC 146
Query 746 CTTCTTTGCAGCAAAGAGAAGAGGTGTTGTTGATGGTGTTGATTTTGGAGCAACTGGTTT 805
|||||||||| |||| ||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 147 CTTCTTTGCAACAAATAGAAGAGGTATTGTTGATGGTGTGGATTTTGGAGCAACTGGTTT 206
Query 806 AGTGAAGAAGATAGATGTAGATC-GAATCCGTGAGAGGCTTGATAGT 851
||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 207 AGTGAAGAAGATAGATGTAGATCAGA-TCCGTGAGTGGCTTGATAGT 252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78046912005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5