BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G22941.1

Length=249
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg932265 jgi|Araly1|932265|scaffold_400253.1                        139    8e-33


> Ahg932265 jgi|Araly1|932265|scaffold_400253.1
Length=273

 Score =  139 bits (75),  Expect = 8e-33
 Identities = 184/232 (79%), Gaps = 25/232 (11%)
 Strand=Plus/Plus

Query  29   TCATCACTTATATGGTGATTTTCTTGATTTTAACAG--G-AATATCAAGAGTAA-AGGCT  84
            ||||||||||||||||||||||||||||||| ||||  | |||||||||||||| || | 
Sbjct  40   TCATCACTTATATGGTGATTTTCTTGATTTTGACAGTAGGAATATCAAGAGTAACAG-CA  98

Query  85   AAGAAGCCACCATGTCTAGAAGGCCGAACCGCATATGTGTCACCTGGTCCTTGTAGTAAC  144
            |||||||||||||||  |||||| |||| ||| |||    ||  |   ||||||||| | 
Sbjct  99   AAGAAGCCACCATGTAAAGAAGGTCGAATCGCGTAT----CA--T---CCTTGTAGTCAG  149

Query  145  AGTCTATGCACACAAGATTGCAG-GCCTGCTGGT-T--ATCACACTGGCAAATGTAAAGT  200
            ||||||||| ||||||| ||| | || ||||||| |  ||| ||| ||||||||| ||  
Sbjct  150  AGTCTATGCGCACAAGACTGC-GCGCTTGCTGGTGTTTATCGCACAGGCAAATGTGAACC  208

Query  201  TGAGT-GGT-CAACACCAATTTGTAAATGTTATGGATGCAGAA-AGGTGTAG  249
            ||| | ||  ||| |  | |||| |||||||| ||||||| || ||||||||
Sbjct  209  TGA-TAGGAACAA-AGTAGTTTGCAAATGTTACGGATGCA-AATAGGTGTAG  257



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8630546986


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5