BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G22942.1

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg481157 jgi|Araly1|481157|fgenesh2_kg.4__217__AT2G22942.1          278    2e-74


> Ahg481157 jgi|Araly1|481157|fgenesh2_kg.4__217__AT2G22942.1
Length=225

 Score =  278 bits (150),  Expect = 2e-74
 Identities = 180/195 (92%), Gaps = 0/195 (0%)
 Strand=Plus/Plus

Query  1    ATGTCAAAGATTAACATTCTTATCGTTGCAGCAGTTTTACTTAGCTCCGTGGTTCTTGCT  60
            |||||||||||||||||  ||||| |||||||| |||||||||||| | ||||| |||||
Sbjct  1    ATGTCAAAGATTAACATAGTTATCTTTGCAGCACTTTTACTTAGCTTCATGGTTATTGCT  60

Query  61   TCAGTGGCTCGTCCGGACTCGACTCTCCAGAGCAAATCAACGGAGATAGAGAAGAACTGT  120
            |||||||||||||| |||| |||||| ||||||||||||||||| || ||||||||||||
Sbjct  61   TCAGTGGCTCGTCCCGACTTGACTCTACAGAGCAAATCAACGGAAATGGAGAAGAACTGT  120

Query  121  GAAACCGATGAGTGTTTGATGAAAACGACATCGGATGCTCACCTCGATTACATCTATACC  180
            ||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  121  GAAACGGAGGAGTGTTTGATGAAAACGACATCAGATGCTCACCTCGATTACATCTATACC  180

Query  181  CAAAATCCTCCTCCG  195
            |||||||||||||||
Sbjct  181  CAAAATCCTCCTCCG  195



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11675610234


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5