BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22960.1
Length=555
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932268 jgi|Araly1|932268|scaffold_400256.1 761 0.0
Ahg481168 jgi|Araly1|481168|fgenesh2_kg.4__228__AT2G22990.1 158 5e-38
Ahg932263 jgi|Araly1|932263|scaffold_400251.1 141 5e-33
Ahg481161 jgi|Araly1|481161|fgenesh2_kg.4__221__AT2G22970.3 141 5e-33
> Ahg932268 jgi|Araly1|932268|scaffold_400256.1
Length=604
Score = 761 bits (412), Expect = 0.0
Identities = 517/566 (91%), Gaps = 13/566 (2%)
Strand=Plus/Plus
Query 1 ATGAGAACTTTTTCACCCAAGTTGCTGCTTCTTCTTTTACTTGTTTTAAGACATCATGCT 60
||||||||||| |||| |||||||||||||| ||| | ||||| || ||||||||||||
Sbjct 21 ATGAGAACTTTGTCACTGAAGTTGCTGCTTCTGCTTCTGCTTGTCTTGAGACATCATGCT 80
Query 61 GAATCTGGCTCTATCGTCAAGTTTCTTCCCGGTTTTGAAGGCCCTCTTCCTTTCGAACTT 120
|| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 81 GATTCCGGCTCCATCGTCAAGTTTCTTCCTGGTTTTGAAGGCCCTCTTCCTTTCGAACTA 140
Query 121 GAAACC------GGGTA-CATC-G-GTA-TTGCTAAATATTGGGCCAATGACGAGAGGGT 170
|||||| ||||| || | | | | | |||| ||||||||||||| ||||||||||
Sbjct 141 GAAACCGGGTTTGGGTACCA-CAGTGCACTAGCTACATATTGGGCCAATAACGAGAGGGT 199
Query 171 ACGTGAAGCTCTTCAAATAAGAAAGGGAAGTATAGGAAAATGGATACGATGTAATTCGAA 230
||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||
Sbjct 200 TCGTGAAGCTCTTCAAATCAGGAAGGGAAGTATAGGAAAATGGATACGATGTAATAGGAA 259
Query 231 TATACATTACGATGACGACATTATTAGCAGCATACCATATCATATGAATAACAGCATCAA 290
||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 TATTGATTACAATGAAGACATTATTAGCAGCATACCATATCATATGAATAACAGCATCAA 319
Query 291 CGGATACCGATCTCTTATTTACAGTGGTGATCACGATATGGAGGTACCTTTCCTTGCAAC 350
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 320 CGGATACCGATCTCTTATTTACAGTGGTGATCACGACATGGAGGTACCTTTCCTTGCAAC 379
Query 351 TGAAGCTTGGATAAGATCTCTTAATTATCCTATTATTGATGATTGGAGGCCTTGGATAAT 410
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 380 TGAAGCTTGGATAAGATCTCTCAATTATCCTATCATTGATGATTGGAGGCCTTGGATAAT 439
Query 411 AAACAATCAGATTGCTGGATACACGATGACCTATGCCAATAAGATGACATATGCTACTAT 470
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 440 AAACAATCAGATTGCTGGATACACGATGACCTATGCCAATAAGATGACATATGCTACTGT 499
Query 471 CAA-GGCAAGTGGACACACTGCAGAGTATAAACCAGCGGAGAGCTTTATCATGTTCCAAC 529
||| || | |||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 500 CAAAGG-AGGTGGGCACACTGCAGAGTATAAACCAGAGGAGAGCTTTATCATGTTCCAAA 558
Query 530 GATGGATCAGTGGCCAGCCTCTGTAA 555
||||||| |||||||| |||||||||
Sbjct 559 GATGGATAAGTGGCCAACCTCTGTAA 584
> Ahg481168 jgi|Araly1|481168|fgenesh2_kg.4__228__AT2G22990.1
Length=1503
Score = 158 bits (85), Expect = 5e-38
Identities = 111/124 (90%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 19 AAGTTGCTGCTTCTTCTTTTACTTGTTTTAAGACATCATGCTGAATCTGGCTCTATCGTC 78
||||| |||||||| ||| ||||||| ||||| ||||||| ||| | || |||||| |||
Sbjct 92 AAGTTTCTGCTTCTGCTTCTACTTGTCTTAAGTCATCATGTTGATTGTGCCTCTATTGTC 151
Query 79 AAGTTTCTTCCCGGTTTTGAAGGCCCTCTTCCTTTCGAACTTGAAACCGGGTACATCGGT 138
||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 152 AAGTTTCTTCCTGGTTTTGAAGGCCCTCTTCCTTTCGAACTTGAAACCGGGTACGTTGGT 211
Query 139 ATTG 142
||||
Sbjct 212 ATTG 215
> Ahg932263 jgi|Araly1|932263|scaffold_400251.1
Length=1260
Score = 141 bits (76), Expect = 5e-33
Identities = 107/122 (88%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 22 TTGCTGCTTCTTCTTTTACTTGT-TTTAAGACATCATGCTGAATCTGGCTCTATCGTCAA 80
||||||||||| ||| | || | || || ||||||| ||| |||||||||||||||||
Sbjct 39 TTGCTGCTTCTGCTTCTGTTTATCTTGAA-CCATCATGTTGATTCTGGCTCTATCGTCAA 97
Query 81 GTTTCTTCCCGGTTTTGAAGGCCCTCTTCCTTTCGAACTTGAAACCGGGTACATCGGTAT 140
||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 98 GTTCCTTCCCGGTTTTGAAGGCCCTCTTCCTTTTGAACTCGAAACCGGGTACATTGGTAT 157
Query 141 TG 142
||
Sbjct 158 TG 159
> Ahg481161 jgi|Araly1|481161|fgenesh2_kg.4__221__AT2G22970.3
Length=1574
Score = 141 bits (76), Expect = 5e-33
Identities = 86/91 (95%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 52 CATCATGCTGAATCTGGCTCTATCGTCAAGTTTCTTCCCGGTTTTGAAGGCCCTCTTCCT 111
||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 71 CATCATGTTGATTCTGGCTCTATCGTCAAGTTTCTTCCCGGCTTTGAAGGCCCTCTTCCT 130
Query 112 TTCGAACTTGAAACCGGGTACATCGGTATTG 142
|||||||| |||||||||||||| |||||||
Sbjct 131 TTCGAACTCGAAACCGGGTACATTGGTATTG 161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20260617759
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5