BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23030.1
Length=1378
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481174 jgi|Araly1|481174|fgenesh2_kg.4__234__AT2G23030.1 1670 0.0
> Ahg481174 jgi|Araly1|481174|fgenesh2_kg.4__234__AT2G23030.1
Length=1123
Score = 1670 bits (904), Expect = 0.0
Identities = 1078/1156 (93%), Gaps = 36/1156 (3%)
Strand=Plus/Plus
Query 1 TCTACAGATATTTTGGACGAGAAGATTCATCaaaaagaaaaaaaaaaTAATAAAGGACCA 60
|||| |||||||||||| |||||||||||||||||| |||||||| ||| ||||||||||
Sbjct 1 TCTAAAGATATTTTGGAAGAGAAGATTCATCAAAAA-AAAAAAAAGATATTAAAGGACCA 59
Query 61 TTTTAGGGAAGTGAGAACAAAAACAAAAGTGGTAGCTATGGAGAAGTATGAGATGGTGAA 120
||||| ||||||||| ||||||| | |||||||||||||||||||||||
Sbjct 60 TTTTAAGGAAGTGAG------AACAAAA-----A---ATGGAGAAGTATGAGATGGTGAA 105
Query 121 GGATTTAGGATTTGGTAATTTCGGATTGGCTCGGCTTATGCGTAATAAGCAAACAAACGA 180
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 106 GGATTTGGGATTTGGTAATTTCGGTTTGGCTCGGCTTATGCGTAATAAGCAAACAAACGA 165
Query 181 GCTTGTGGCTGTCAAATTCATCGATCGAGGCTACAAGATAGATGAGAACGTTGCAAGAGA 240
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 166 GCTTGTGGCTGTCAAATTCATCGATCGAGGCTATAAGATTGATGAGAACGTTGCAAGAGA 225
Query 241 AATAATCAATCATAGAGCTCTCAACCATCCGAATATTGTTCGGTTTAAAGAGGTTGTTTT 300
|||||||||||||||||||||||||||||| |||| || |||||| |
Sbjct 226 AATAATCAATCATAGAGCTCTCAACCATCCCAATA---------TT------GTTGTTCT 270
Query 301 AACTCCGACACATCTTGGAATAGTAATGGAGTATGCAGCTGGAGGAGAACTGTTCGAGCG 360
|||||||||||||||||| || ||||||||||| ||||||||||||||||| || || ||
Sbjct 271 AACTCCGACACATCTTGGGATTGTAATGGAGTACGCAGCTGGAGGAGAACTATTTGATCG 330
Query 361 GATATCTAGCGTGGGTCGATTTAGCGAAGCTGAGGCAAGATATTTCTTTCAACAACTCAT 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 GATATCTAGCGCGGGTCGATTTAGCGAAGCTGAGGCAAGATATTTCTTTCAACAACTCAT 390
Query 421 TTGTGGAGTCCATTACTTACATG-CATTGCAAATATGCCATAGAGATCTGAAATTAGAAA 479
|||||||||||||||||||||| || || |||||||||| |||||||||||||||||||
Sbjct 391 CTGTGGAGTCCATTACTTACATGCCA-TGAAAATATGCCACAGAGATCTGAAATTAGAAA 449
Query 480 ACACATTGCTTGATGGAAGCCCAGCACCACGTTTAAAAATTTGTGATTTTGGCTACTCAA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 ACACATTGCTTGATGGAAGCCCAGCACCACGTTTAAAAATTTGTGATTTTGGCTACTCAA 509
Query 540 AGTCTTCTGTTCTGCACTCCAACCCAAAATCAACGGTGGGAACTCCGGCATATATAGCAC 599
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 AGTCTTCTGTTCTGCATTCCAACCCAAAATCAACGGTGGGAACTCCGGCATATATAGCAC 569
Query 600 CGGAAGTTTTTTGTCGATCGGAATACGACGGAAAGTCAGTTGATGTGTGGTCTTGTGGAG 659
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 570 CGGAAGTTTTTTGTCGATCGGAATACGATGGAAAGTCAGTTGATGTGTGGTCTTGTGGAG 629
Query 660 TGGCCCTCTATGTTATGTTGGTAGGAGCTTATCCATTCGAAGACCCTAAAGACCCTCGCA 719
|||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 630 TGGCACTCTATGTTATGTTGGTAGGAGCTTATCCTTTCGAAGACCCTAAAGATCCTCGCA 689
Query 720 ATTTCCGAAAAACTGTTCAGAAAATAATGGCCGTAAACTACAAGATTCCAGGATATGTTC 779
|||| |||||||||||||||||||||||||| ||| | ||||||||||||||||||||||
Sbjct 690 ATTTTCGAAAAACTGTTCAGAAAATAATGGCTGTACAGTACAAGATTCCAGGATATGTTC 749
Query 780 ACATATCCGAAGACTGCAGAAAGTTACTATCTCGTATATTTGTTGCCAATCCGTTACATA 839
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 750 ACATATCAGAAGACTGCAGAAAGTTATTATCTCGTATATTTGTTGCCAATCCGTTACATA 809
Query 840 GAAGTACGCTTAAAGAGATTAAGAGTCATGCATGGTTCCTAAAGAATTTGCCAAGAGAAT 899
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 GAAGTACGCTTAAAGAGATTAAGAGTCATGCATGGTTCCTAAAGAATTTGCCAAGAGAAC 869
Query 900 TAAAGGAGCCAGCACAAGCAATCTATTACCAAAGGAATGTTAATCTTATTAATTTTTCTC 959
|||||||| |||||||||| || ||||||||||||||||||||||||||||| |||||||
Sbjct 870 TAAAGGAGTCAGCACAAGCTATTTATTACCAAAGGAATGTTAATCTTATTAACTTTTCTC 929
Query 960 CTCAAAGAGTAGAGGAGATTATGAAGATAGTTGGTGAGGCAAGAACCATTCCAAACCTTT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 CTCAAAGAGTAGAGGAGATTATGAAGATAGTTGGTGAGGCAAGAACCATTCCAAACCTTT 989
Query 1020 CTCGCCCGGTCGAATCGCTTGGATCagataaaaa-agatgatgatgaagaagaatatttg 1078
||||||||||||||||||||||| ||| ||| | ||||||||| |||||||||||||||
Sbjct 990 CTCGCCCGGTCGAATCGCTTGGACCAGG-AAAGATAGATGATGAAGAAGAAGAATATTTG 1048
Query 1079 gatgctaatgatgaagaatggtatgatgatTACGCATAGACAATAAAAATGTATTAT-AT 1137
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||
Sbjct 1049 GATGCTAATGATGAAGAATGGTATGATGATTACGCATAAACAATAAAAATGTATT-TCAT 1107
Query 1138 GTTGTCAAATTATGAA 1153
||||||||||||||||
Sbjct 1108 GTTGTCAAATTATGAA 1123
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51580306701
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5