BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G23030.1 Length=1378 Score E Sequences producing significant alignments: (Bits) Value Ahg481174 jgi|Araly1|481174|fgenesh2_kg.4__234__AT2G23030.1 1670 0.0 > Ahg481174 jgi|Araly1|481174|fgenesh2_kg.4__234__AT2G23030.1 Length=1123 Score = 1670 bits (904), Expect = 0.0 Identities = 1078/1156 (93%), Gaps = 36/1156 (3%) Strand=Plus/Plus Query 1 TCTACAGATATTTTGGACGAGAAGATTCATCaaaaagaaaaaaaaaaTAATAAAGGACCA 60 |||| |||||||||||| |||||||||||||||||| |||||||| ||| |||||||||| Sbjct 1 TCTAAAGATATTTTGGAAGAGAAGATTCATCAAAAA-AAAAAAAAGATATTAAAGGACCA 59 Query 61 TTTTAGGGAAGTGAGAACAAAAACAAAAGTGGTAGCTATGGAGAAGTATGAGATGGTGAA 120 ||||| ||||||||| ||||||| | ||||||||||||||||||||||| Sbjct 60 TTTTAAGGAAGTGAG------AACAAAA-----A---ATGGAGAAGTATGAGATGGTGAA 105 Query 121 GGATTTAGGATTTGGTAATTTCGGATTGGCTCGGCTTATGCGTAATAAGCAAACAAACGA 180 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 106 GGATTTGGGATTTGGTAATTTCGGTTTGGCTCGGCTTATGCGTAATAAGCAAACAAACGA 165 Query 181 GCTTGTGGCTGTCAAATTCATCGATCGAGGCTACAAGATAGATGAGAACGTTGCAAGAGA 240 ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 166 GCTTGTGGCTGTCAAATTCATCGATCGAGGCTATAAGATTGATGAGAACGTTGCAAGAGA 225 Query 241 AATAATCAATCATAGAGCTCTCAACCATCCGAATATTGTTCGGTTTAAAGAGGTTGTTTT 300 |||||||||||||||||||||||||||||| |||| || |||||| | Sbjct 226 AATAATCAATCATAGAGCTCTCAACCATCCCAATA---------TT------GTTGTTCT 270 Query 301 AACTCCGACACATCTTGGAATAGTAATGGAGTATGCAGCTGGAGGAGAACTGTTCGAGCG 360 |||||||||||||||||| || ||||||||||| ||||||||||||||||| || || || Sbjct 271 AACTCCGACACATCTTGGGATTGTAATGGAGTACGCAGCTGGAGGAGAACTATTTGATCG 330 Query 361 GATATCTAGCGTGGGTCGATTTAGCGAAGCTGAGGCAAGATATTTCTTTCAACAACTCAT 420 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 331 GATATCTAGCGCGGGTCGATTTAGCGAAGCTGAGGCAAGATATTTCTTTCAACAACTCAT 390 Query 421 TTGTGGAGTCCATTACTTACATG-CATTGCAAATATGCCATAGAGATCTGAAATTAGAAA 479 |||||||||||||||||||||| || || |||||||||| ||||||||||||||||||| Sbjct 391 CTGTGGAGTCCATTACTTACATGCCA-TGAAAATATGCCACAGAGATCTGAAATTAGAAA 449 Query 480 ACACATTGCTTGATGGAAGCCCAGCACCACGTTTAAAAATTTGTGATTTTGGCTACTCAA 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 450 ACACATTGCTTGATGGAAGCCCAGCACCACGTTTAAAAATTTGTGATTTTGGCTACTCAA 509 Query 540 AGTCTTCTGTTCTGCACTCCAACCCAAAATCAACGGTGGGAACTCCGGCATATATAGCAC 599 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 510 AGTCTTCTGTTCTGCATTCCAACCCAAAATCAACGGTGGGAACTCCGGCATATATAGCAC 569 Query 600 CGGAAGTTTTTTGTCGATCGGAATACGACGGAAAGTCAGTTGATGTGTGGTCTTGTGGAG 659 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 570 CGGAAGTTTTTTGTCGATCGGAATACGATGGAAAGTCAGTTGATGTGTGGTCTTGTGGAG 629 Query 660 TGGCCCTCTATGTTATGTTGGTAGGAGCTTATCCATTCGAAGACCCTAAAGACCCTCGCA 719 |||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 630 TGGCACTCTATGTTATGTTGGTAGGAGCTTATCCTTTCGAAGACCCTAAAGATCCTCGCA 689 Query 720 ATTTCCGAAAAACTGTTCAGAAAATAATGGCCGTAAACTACAAGATTCCAGGATATGTTC 779 |||| |||||||||||||||||||||||||| ||| | |||||||||||||||||||||| Sbjct 690 ATTTTCGAAAAACTGTTCAGAAAATAATGGCTGTACAGTACAAGATTCCAGGATATGTTC 749 Query 780 ACATATCCGAAGACTGCAGAAAGTTACTATCTCGTATATTTGTTGCCAATCCGTTACATA 839 ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 750 ACATATCAGAAGACTGCAGAAAGTTATTATCTCGTATATTTGTTGCCAATCCGTTACATA 809 Query 840 GAAGTACGCTTAAAGAGATTAAGAGTCATGCATGGTTCCTAAAGAATTTGCCAAGAGAAT 899 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 810 GAAGTACGCTTAAAGAGATTAAGAGTCATGCATGGTTCCTAAAGAATTTGCCAAGAGAAC 869 Query 900 TAAAGGAGCCAGCACAAGCAATCTATTACCAAAGGAATGTTAATCTTATTAATTTTTCTC 959 |||||||| |||||||||| || ||||||||||||||||||||||||||||| ||||||| Sbjct 870 TAAAGGAGTCAGCACAAGCTATTTATTACCAAAGGAATGTTAATCTTATTAACTTTTCTC 929 Query 960 CTCAAAGAGTAGAGGAGATTATGAAGATAGTTGGTGAGGCAAGAACCATTCCAAACCTTT 1019 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 930 CTCAAAGAGTAGAGGAGATTATGAAGATAGTTGGTGAGGCAAGAACCATTCCAAACCTTT 989 Query 1020 CTCGCCCGGTCGAATCGCTTGGATCagataaaaa-agatgatgatgaagaagaatatttg 1078 ||||||||||||||||||||||| ||| ||| | ||||||||| ||||||||||||||| Sbjct 990 CTCGCCCGGTCGAATCGCTTGGACCAGG-AAAGATAGATGATGAAGAAGAAGAATATTTG 1048 Query 1079 gatgctaatgatgaagaatggtatgatgatTACGCATAGACAATAAAAATGTATTAT-AT 1137 |||||||||||||||||||||||||||||||||||||| |||||||||||||||| | || Sbjct 1049 GATGCTAATGATGAAGAATGGTATGATGATTACGCATAAACAATAAAAATGTATT-TCAT 1107 Query 1138 GTTGTCAAATTATGAA 1153 |||||||||||||||| Sbjct 1108 GTTGTCAAATTATGAA 1123 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51580306701 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5