BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23060.1
Length=1338
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932285 jgi|Araly1|932285|scaffold_400273.1 1903 0.0
Ahg490860 jgi|Araly1|490860|fgenesh2_kg.7__293__AT4G37580.1 1037 0.0
> Ahg932285 jgi|Araly1|932285|scaffold_400273.1
Length=1279
Score = 1903 bits (1030), Expect = 0.0
Identities = 1186/1262 (94%), Gaps = 8/1262 (1%)
Strand=Plus/Plus
Query 80 AAAA-CAGAGAATATGACGGTGCTTGTGGAGGTTAGAGAATACGACCCAAGTAAAGACTT 138
|||| ||||||||||||| ||| ||||||||||||||||||||||||| |||| ||||||
Sbjct 8 AAAACCAGAGAATATGACTGTGGTTGTGGAGGTTAGAGAATACGACCCTAGTAGAGACTT 67
Query 139 AGCCACTGTAGAAGATGTTGAACGGCGGTGCGAAGTTGGCCCAGCCGGAAAACTTTCTCT 198
|||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 68 AGCCACCGTTGAAGATGTTGAACGGCGGTGCGAAGTTGGCCCAACCGGAAAACTTTCTCT 127
Query 199 CTTCACCGATCTCTTAGGTGACCCTATTTGCCGTGTCCGACATTCACCTTCTTACCTCAT 258
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 128 CTTCACCGATCTCTTAGGTGACCCTATTTGCCGTGTTCGACATTCTCCTTCTTACCTCAT 187
Query 259 GCTGGTGGCTGAGATTGGTCCGAAAGAGAAGAAAGAGTTAGTTGGAATGATTCGGGGATG 318
|||||||||||||||||||||||| ||||| |||||||||||||| |||||||| || ||
Sbjct 188 GCTGGTGGCTGAGATTGGTCCGAAGGAGAATAAAGAGTTAGTTGGCATGATTCGAGGTTG 247
Query 319 TATCAAAACCGTTACATGTGGTATCACCACCAAAAGACTTGATTTAACTCATAACAAATC 378
||||||||||||||||||||| | | ||||||||||| ||||||||||||| ||||||
Sbjct 248 TATCAAAACCGTTACATGTGG--T-AGTACCAAAAGACTCGATTTAACTCATAGCAAATC 304
Query 379 CCAAAACGATGTCGTTATTACCAAACCACTTTACACTAAACTCGCTTACATTTTGGGTCT 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 CCAAAACGATGTCGTTATTACCAAACCACTTTACACTAAACTCGCTTACATTTTGGGTCT 364
Query 439 CCGCGTTTCTCCTACACACCGGAGACAAGGGATAGGGTTTAAGCTCGTGAAGGCTATGGA 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 CCGCGTTTCTCCTACACACCGGAGACAAGGGATAGGGTTTAAGCTCGTGAAGGCTATGGA 424
Query 499 AGATTGGTTTAGTCAAAACGGGGCTGAATATTCCTATTTTGCAACTGAAAACGACAATCA 558
||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 425 AGATTGGTTTAGTCAAAACGGCGCAGAATATTCTTATTTTGCAACTGAAAACGACAATCA 484
Query 559 CGCTTCCGTCAATCTTTTCACCGGAAAATGTGGTTACGCCGAGTTTCGTACACCGTCTAT 618
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 485 CGCTTCCGTTAATCTTTTCACCGGAAAATGTGGTTACTCCGAGTTTCGTACACCGTCGAT 544
Query 619 TTTGGTTAACCCGGTTTACGCACACCGGGTCAACATTTCTCGTCGGGTTACCGTAATTAA 678
||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 545 TTTGGTTAATCCGGTTTACGCACACCGAGTTAACATTTCTCGTCGGGTTACCGTAATCAA 604
Query 679 GCTTGAACCGTCTGATGCTGAGTTACTATACCGGCTTCGGTTTAGCACAACCGAGTTTTT 738
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 605 GCTTGAAGCGTCTGATGCTGAGTTACTATACCGGCTCCGGTTTAGCACAACCGAGTTTTT 664
Query 739 CCCTCGCGACATTGACTCTGTTTTGAATAACAAACTCTCGTTAGGAACATTCGTCGCGGT 798
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 665 TCCTCGTGACATTGACTCGGTTTTGAATAACAAACTCTCGTTAGGAACATTCGTTGCGGT 724
Query 799 TCCACGTGGCAGTTGTTACGGATCCGGGTCTAGG-TCATGGCCCGGTTCGGCTAAGTTCT 857
|||||||||||||||||| |||||||||| | || |||||||||||||||||||| |||
Sbjct 725 TCCACGTGGCAGTTGTTATGGATCCGGGT-TCGGGTCATGGCCCGGTTCGGCTAAATTCC 783
Query 858 TGGAGTATCCACCGGACTCGTGGGCGGTTTTAAGCGTGTGGAATTGTAAAGACTCGTTTA 917
||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 784 TGGAGTATCCACCCGATTCGTGGGCGGTTTTAAGCGTTTGGAATTGTAAAGACTCGTTTC 843
Query 918 GATTAGAAGTTCGCGGCGCGTCGAGATTGAGGCGCGTGGTTTCAAAAGCGACGCGCATGG 977
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 844 GGTTAGAAGTTCGTGGCGCGTCGAGATTGAGGCGCGTGGTTTCAAAAGCGACGCGCGTGG 903
Query 978 TTGATAAAAC-TCTACCGTTTTTGAAAATACCGTCGATCCCGGCGGTTTTCCGGCCGTTT 1036
|||||||||| | |||||||||||||||| |||||||| ||||| ||||||||| |||||
Sbjct 904 TTGATAAAACGT-TACCGTTTTTGAAAATTCCGTCGATTCCGGCAGTTTTCCGGTCGTTT 962
Query 1037 GGGCTGCATTTTATGTACGGAATCGGCGGAGAAGGACCACGCGCGGAGAAAATGGTGAAG 1096
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 963 GGACTGCATTTTATGTACGGCATCGGCGGAGAAGGACCACGCGCGGAGAAAATGGTGAAG 1022
Query 1097 GCATTGTGTGACCATGCACATAATTTGGCAAAGGAAGGAGGATGCGGCGTGGTGGCGGCA 1156
|| ||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1023 GCGTTGTGTGGTCATGCGCATAATTTGGCAAAGGAAGGAGGATGCGGCGTCGTGGCGGCG 1082
Query 1157 GAAGTCGCCGGCGAAGAGCCGCTCCGGCGAGGGATACCGCATTGGAAAGTGCTATCGTGC 1216
||||| ||||| | |||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1083 GAAGTAGCCGGAGGAGAGCCGCTCCGGCGAGGAATACCACATTGGAAAGTGCTATCGTGC 1142
Query 1217 GCTGAGGATTTGTGGTGTATTAAACGGCTTGGAGAAGATTATAGTGATGGTTCTGTTGGT 1276
|| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1143 GCCGAGGATTTGTGGTGTATTAAACGGCTTGGAGAGGATTATAGTGACGGTTCTGTTGGT 1202
Query 1277 GATTGGACTAAATCGCCACCTGGCGATTCTATTTTTGTTGACCCTAGAGAATTTTAGTTT 1336
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 1203 GATTGGACTAAATCGCCACCTGGCGAATCCATTTTTGTTGACCCTAGAGAATTTTAATTT 1262
Query 1337 TA 1338
||
Sbjct 1263 TA 1264
> Ahg490860 jgi|Araly1|490860|fgenesh2_kg.7__293__AT4G37580.1
Length=1695
Score = 1037 bits (561), Expect = 0.0
Identities = 1023/1241 (82%), Gaps = 52/1241 (4%)
Strand=Plus/Plus
Query 109 GGTTAGAGAATACGACCCAAGTAAAGACTTAGCC-ACTGTAGAAGATGTTGAACGGCGGT 167
||||||||| |||||||| || |||||||||| | ||||| || || || || ||||
Sbjct 315 GGTTAGAGAGTACGACCCGAGCCGAGACTTAGCCGGC-GTAGAGGACGTGGAGCGACGGT 373
Query 168 GCGAAGTTGG-CCCAGCCGGAAAACTTTCTCTCTTCACCGATCTCTTAGGTGACCCTATT 226
| || || || || || ||| || |||||||| |||||||| || || |||||||| |||
Sbjct 374 GTGAGGTCGGACCAAG-CGGCAAGCTTTCTCTATTCACCGACCTTTTGGGTGACCCGATT 432
Query 227 TGCCGTGTCCGACATTCACCTTCTTACCTCATGCTGGTGGCTGAGATTGGTCCGAAAGAG 286
|| | |||||||||||||||| || |||||| ||||||||||||| ||| || |||
Sbjct 433 TGTAGAATCCGACATTCACCTTCCTATCTCATGTTGGTGGCTGAGATGGGTACG---GAG 489
Query 287 AAGAAAGAGTTAGTTGGAATGATTCGGGGATGTATCAAAACCGTTACATGTGGTATCACC 346
||||| ||| |||| || |||||| | |||||||||||||||||||||||||| |
Sbjct 490 AAGAAGGAGATAGTGGGCATGATTAGAGGATGTATCAAAACCGTTACATGTGG------C 543
Query 347 ACCAAAAGACTTGATTTAACTCATAAC-AAATCCCAAAACGATGTCGTTATTACCAAACC 405
| |||| ||| ||||||| |||| || |||||||||||||| |||| || || ||
Sbjct 544 A--AAAA-ACTCGATTTAAATCAT-ACTAAATCCCAAAACGACGTCG---TT---AAGCC 593
Query 406 ACTTTACACTAAACTCGCTTACATTTTGGGTCTCCGCGTTTCTCC-TACACACCGGAGAC 464
||||||||||||||||||||| ||||||| || || || ||||| | | ||| ||||||
Sbjct 594 TCTTTACACTAAACTCGCTTACGTTTTGGGCCTTCGTGTCTCTCCTTTC-CACAGGAGAC 652
Query 465 AAGGGATAGGGTTTAAGCTCGTGAAGGCT-ATGGAAGATTGGTTTAGTCAAAACGGGGCT 523
||||||| ||||||||||||||||| | | ||||| || |||||||| |||||||| |||
Sbjct 653 AAGGGATTGGGTTTAAGCTCGTGAA-GATGATGGAGGAATGGTTTAGACAAAACGGTGCT 711
Query 524 GAATATTCCTATTTTGCAACTGAAAACGACAATCACGCTTCCGTCAATCTT-TTCACCGG 582
|||||||| ||| |||| ||||| ||||| ||||| ||||| || ||| || ||||||||
Sbjct 712 GAATATTCGTATATTGCTACTGAGAACGATAATCAAGCTTCTGTGAAT-TTGTTCACCGG 770
Query 583 AAAATGTGGTTACGCCGAGTTTCGTACACCGTCTATTTTGGTTAACCCGGTTTACGCACA 642
|||||||||||| | ||||||||||| ||||| ||||||||||| ||||||||||| ||
Sbjct 771 AAAATGTGGTTATTCTGAGTTTCGTACGCCGTCGATTTTGGTTAATCCGGTTTACGCTCA 830
Query 643 CCGGGTCAACATTTCTCGTCGGGTTACCGTAATTAAGCTTGAACC-GTCTGATGCTGAGT 701
|| || || | ||||| || || ||||| ||||| || || || || ||||||||||
Sbjct 831 TCGAGTTAATGTCTCTCGGCGAGTCACCGTTATTAAACTAGACCCGGT-TGATGCTGAG- 888
Query 702 TAC--TATACCGGCTTCGGTTTAGCACAACCGAGTTTTTCCCTCGCGACATTGACTCTGT 759
|| | ||||| | |||||||||||||| ||||||||||| || || ||||| |||||
Sbjct 889 -ACGTTGTACCGAATCCGGTTTAGCACAACAGAGTTTTTCCCGCGGGATATTGATTCTGT 947
Query 760 TTTGAATAACAAACTCTCGTTAGGAACATTCGTCGCGGTTCCACGTGGCAGTTGTTACGG 819
| | ||||||||||||||| | || |||||||| || || |||||||| || ||||| ||
Sbjct 948 TCTCAATAACAAACTCTCGCTCGGGACATTCGTAGCAGTGCCACGTGGAAGCTGTTATGG 1007
Query 820 ATCCGGGTCTAGG-TCATGGCCCGGTTCGGCTAAGTTCTTGGAGTATCCACCGGACTCGT 878
|||||||||| || |||||||||||||||||||| ||| | || || || || || || |
Sbjct 1008 ATCCGGGTCT-GGATCATGGCCCGGTTCGGCTAAATTCCTCGAATACCCGCCCGAGTCTT 1066
Query 879 GGGCGGTTTTAAGCGTGTGGAATTGTAAAGACTCGTTTAGATTAGAAGTTCGCGGCGCGT 938
|||| || |||||||||||||||||||||||||||||| | |||||||| || |||||||
Sbjct 1067 GGGCCGTATTAAGCGTGTGGAATTGTAAAGACTCGTTTCGGTTAGAAGTACGTGGCGCGT 1126
Query 939 CGAGATTGAGGCGCGTGGTTTC-AAAAGCGACGCGCATGGTTGATAAAAC-TCTACCGTT 996
||||||| || |||||||| | |||| |||| ||| ||||||||||||| | | |||||
Sbjct 1127 CGAGATTAAGACGCGTGGTGGCTAAAA-CGACTCGCGTGGTTGATAAAACGT-TGCCGTT 1184
Query 997 TTTGAAAATACCGTCGATCCCGGCGGTTTTCCG-GCCGTTTGGGCTGCATTTTATGTACG 1055
||||||| | || ||||| || | ||||| | ||| |||||||| || |||||||| |
Sbjct 1185 TTTGAAACTCCCTTCGATACCATCTGTTTT-TGAGCCTTTTGGGCTTCACTTTATGTATG 1243
Query 1056 GAATCGGCGGAGAAGGACCACGCGCGGAGAAAATGGTGAAGGCATTGTGTGAC-CATGCA 1114
|||| || |||||||| |||||||||| ||| |||||||| | ||||||| | || ||
Sbjct 1244 GAATTGGAGGAGAAGGTCCACGCGCGGTGAAGATGGTGAAATCGTTGTGTG-CTCACGCG 1302
Query 1115 CATAATTTGGC-AAAGGAAGGAGGATGCGGCGTGGTGGCGGCAGAAGTCGCCGGCGAAGA 1173
||||| ||||| ||| |||||||| || || || |||||||| ||||| ||||| |||||
Sbjct 1303 CATAACTTGGCTAAA-GAAGGAGGTTGTGGTGTTGTGGCGGCGGAAGTTGCCGGAGAAGA 1361
Query 1174 GCCGCTCCGGCGAGGGATACCGCATTGGAAAGTGCTATCGTGCGCTGAGGAT-TTGTGGT 1232
|||| | |||||||||||||| |||||||||||| ||||||| || |||||| || ||||
Sbjct 1362 GCCGTTACGGCGAGGGATACCACATTGGAAAGTGTTATCGTGTGCCGAGGATCTT-TGGT 1420
Query 1233 GTATTAAACGGCTTGGAGAAGATTATAGTGATGGT-TCTGTTGGTGATTGGACTAAATCG 1291
|||||||||||||||| || ||||||||||||||| | ||||||||||||||||||||||
Sbjct 1421 GTATTAAACGGCTTGGGGATGATTATAGTGATGGTGT-TGTTGGTGATTGGACTAAATCG 1479
Query 1292 CCACCTGGCGATTCTATTTTTGTTGACCCTAGAGAATTTTA 1332
|||||||||| ||| |||||||| |||||||||||||||||
Sbjct 1480 CCACCTGGCGTTTCAATTTTTGTAGACCCTAGAGAATTTTA 1520
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50055390021
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5