BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G23067.1

Length=144
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg932286 jgi|Araly1|932286|scaffold_400274.1                        198    7e-51


> Ahg932286 jgi|Araly1|932286|scaffold_400274.1
Length=211

 Score =  198 bits (107),  Expect = 7e-51
 Identities = 137/150 (91%), Gaps = 8/150 (5%)
 Strand=Plus/Plus

Query  1    ATGGAAGTGAGACATGGAGCGTTGTCTACTGCTAATGAGAATGAGGTCATCATAGCTTCT  60
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  21   ATGGAAGTGAGACATGAAGCGTTGTCTACTGCTAATGAGAATGAGGTCATCATAGCTTCT  80

Query  61   GCCATTTCATCACTCTCGTCTTGTCAAATCAACGCCATTCATTATCATCAT------GAT  114
            ||||||||| ||||||||||||||||||||||  ||||| |||||||||||      |||
Sbjct  81   GCCATTTCAACACTCTCGTCTTGTCAAATCAAAACCATTAATTATCATCATCATCATGAT  140

Query  115  TCATACGCATCCCATGCATGGCAGACATAA  144
            ||||||  ||||||||||||||||||||||
Sbjct  141  TCATAC--ATCCCATGCATGGCAGACATAA  168



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 4620779581


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5