BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23070.1
Length=1523
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481178 jgi|Araly1|481178|fgenesh2_kg.4__238__AT2G23070.1 2409 0.0
> Ahg481178 jgi|Araly1|481178|fgenesh2_kg.4__238__AT2G23070.1
Length=1453
Score = 2409 bits (1304), Expect = 0.0
Identities = 1408/1457 (97%), Gaps = 11/1457 (1%)
Strand=Plus/Plus
Query 12 TTaaaaaaaGACATTAATGGCCTTAAGGCCTTGTACTGGATTCACAAtctcctctcttcg 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTAAAAAAAGACATTAATGGCCTTAAGGCCTTGTACTGGATTCACAATCTCCTCTCTTCG 60
Query 72 caacgcttccgccgccaacaacaatctcttctctctcctctcc-t-tc-tcttcgtcgtc 128
|||||||||||||||||| ||||||||||||||||||||||| | || |||||||||||
Sbjct 61 TAACGCTTCCGCCGCCAACGACAATCTCTTCTCTCTCCTCTCCTTCTCTTCTTCGTCGTC 120
Query 129 tccggcgaagaggaatcttcttctctcttcgct-ccAGGACAATCTCCGTCGTTTCGCAT 187
|||||||||||||||||||||| |||||||| | | | ||| | ||||||||||||||||
Sbjct 121 TCCGGCGAAGAGGAATCTTCTTTTCTCTTCGTTACGA-GACCACCTCCGTCGTTTCGCAT 179
Query 188 CCAGCGCTTCTCTTTACCGTCAACATCTCCGGAATCAACAACAACAACATCAGCAACAAC 247
||||||| |||||||||||||||||||| ||||| | ||||||||||| ||||||||||
Sbjct 180 CCAGCGCATCTCTTTACCGTCAACATCTACGGAA-C--CAACAACAACAGCAGCAACAAC 236
Query 248 AGCAATCGCGCGTGAAAGAAAAATCAGAAACGCTGGCTCAGAAGATCGGTAAATCTATCC 307
||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 237 AGCAATCGCGCGTGAAAGAGAAATCAGAAACGCTGGCGCAGAAGATCGGAAAATCTATCC 296
Query 308 GGCGTGCCGGTGCGCCGTCGAAAGCTAGGGTTTACGCTGATGTCAACGTTGTTAGACCTA 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GGCGTGCCGGTGCGCCGTCGAAAGCTAGGGTTTACGCTGATGTCAACGTTGTTAGACCTA 356
Query 368 AGGACTATTGGGATTACGAGTCCCTTGCTGTTCAATGGGGTGTACAGGATGATTATGAGG 427
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 357 AGGATTATTGGGATTACGAGTCTCTTGCTGTTCAATGGGGTGTACAGGATGATTATGAGG 416
Query 428 TGGTGAGGAAGGTAGGAAGGGGAAAATACAGTGAGGTCTTTGAAGGCATTCATGCTACTG 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TGGTGAGGAAGGTAGGAAGGGGAAAATACAGTGAGGTCTTTGAAGGCATTCATGCTACTG 476
Query 488 ATAACGAGAAATGTGTTATCAAGATTTTGAAGCCTGTgaagaagaagaagattaagagag 547
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 ATAACGAGAAATGCGTTATCAAGATTTTGAAGCCTGTGAAGAAGAAGAAGATTAAGAGAG 536
Query 548 agattaagaTTCTGCAGAACCTCTGCGGTGGGCCTAATATTGTAAAATTGCTCGACATTG 607
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 537 AGATTAAGATTCTGCAGAACCTCTGCGGTGGGCCAAATATTGTAAAATTGCTCGACATTG 596
Query 608 TTAGAGATCAGCAGTCTAAGACGCCCAGCTTGATATTTGAACATGTGAACAATAAAGATT 667
|||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 597 TTAGAGATCAGCAGTCAAAGACACCTAGCTTGATATTTGAACATGTGAACAATAAAGATT 656
Query 668 TCAAAGTTCTCTATCCAACTCTCTCAGACTATGATGTTCGATATTACATTTTTGAACTTC 727
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TCAAAGTTCTCTATCCCACTCTCTCAGACTATGATGTTCGATATTACATTTTTGAACTTC 716
Query 728 TAAAGGCGTTGGATTTCTGCCATTCACGTGGAATCATGCACAGAGATGTGAAACCACATA 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TAAAGGCGTTGGATTTCTGCCATTCACGTGGAATCATGCACAGAGATGTGAAACCACATA 776
Query 788 ATGTCATGATTGATCACGAGCAGCGAAAACTTCGTTTAATTGACTGGGGTTTGGCAGAAT 847
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 777 ATGTCATGATTGATCACGAGCAGCGGAAACTTCGTTTAATTGACTGGGGTTTGGCAGAAT 836
Query 848 TCTATCATCCTGGGAAAGAATACAATGTCCGTGTTGCTTCAAGGTACTTTAAGGGTCCAG 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TCTATCATCCTGGGAAAGAATACAATGTCCGTGTTGCTTCAAGGTACTTTAAGGGTCCAG 896
Query 908 AGCTGCTGGTGGATTTACAGGACTATGATTATTCCTTAGACCTATGGAGTCTTGGGTGTA 967
|||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||
Sbjct 897 AGCTGCTGGTGGATTTACAGGACTATGACTATTCCTTAGACTTGTGGAGTCTTGGGTGTA 956
Query 968 TGTTTGCTGGAATGATATTCCGCAAGGAGCCGTTCTTTTATGGCCATGACAACTATGATC 1027
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 957 TGTTTGCTGGAATGATATTCCGCAAGGAGCCGTTCTTTTATGGCCATGACAATTATGATC 1016
Query 1028 AATTGGTCAAAATTGCGAAGGTGCTTGGCACAGATGAACTCAACGCCTACCTAAACAAAT 1087
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 AATTGGTCAAAATTGCAAAGGTGCTTGGCACAGATGAACTCAACGCCTACCTAAACAAAT 1076
Query 1088 ACCGTATAGAGTTGGACCCTAATCTAACATCCCTCGTGGGCAGACATAGCCGGAAGCCAT 1147
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1077 ACCGTATAGAGTTGGACCCTAATCTTACATCCCTCGTGGGCAGACATAGCCGGAAGCCAT 1136
Query 1148 GGACAAAGTTCATCAATTCTGAAAACCAGCACTTAGCAGTTCCTGAGGCTGTTGATTTTG 1207
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1137 GGACAAAGTTCATCAATTCTGAAAACCAGCACTTAGCAGTGCCTGAGGCTGTTGATTTTG 1196
Query 1208 TGGACAAGTTGCTGAGATATGATCACCAAGAAAGGCCAACAGCTAAAGAAGCAATGGCGC 1267
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1197 TGGACAAGTTGCTGAGATATGATCACCAAGAAAGGCCGACGGCTAAAGAAGCAATGGCGC 1256
Query 1268 ATCCATATTTCTATCCGATTAGAAATGCAGAGAGCAGCCGTACGCCGCGCAGCCAGTGAT 1327
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1257 ATCCATATTTCTACCCGATTAGAAATGCAGAAAGCAGCCGTACGCCGCGCAGCCAGTGAT 1316
Query 1328 CTCGAAAACATTTGCTTGTTCAATCTTCTGATTTTTCATTTCTTTACGGATTCAAATTTG 1387
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1317 CTCGAAAACGTTTGCTTGTTCAATCTTCTGATTTTTCATTTCTTTACGGATTCATATTTG 1376
Query 1388 TTATAAATCGATCTGTCATTGTTTCATTCTCTCAAGTGTGCGTGTGTTACTG-T-TTT-G 1444
|||||||||||| ||||||||||||||||||||||||||||||||||| ||| | ||| |
Sbjct 1377 TTATAAATCGATTTGTCATTGTTTCATTCTCTCAAGTGTGCGTGTGTTGCTGCTGTTTCG 1436
Query 1445 CTCTTTCTCAGTGTTTC 1461
|| ||||||||||||||
Sbjct 1437 CTTTTTCTCAGTGTTTC 1453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57021096765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5