BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23090.1
Length=580
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481181 jgi|Araly1|481181|fgenesh2_kg.4__241__AT2G23090.1 737 0.0
> Ahg481181 jgi|Araly1|481181|fgenesh2_kg.4__241__AT2G23090.1
Length=498
Score = 737 bits (399), Expect = 0.0
Identities = 469/501 (94%), Gaps = 12/501 (2%)
Strand=Plus/Plus
Query 57 AAAAATTCCATTTCGTATTTTTCTCTTCTTCCTCTTCTGAAAAATTAGGGTTTGAG---T 113
||||||||||||||| |||||| |||||||||||||||| |||||||||||||| | |
Sbjct 1 AAAAATTCCATTTCGCATTTTTTTCTTCTTCCTCTTCTGCAAAATTAGGGTTTGTGTTCT 60
Query 114 TCTTCTTCTAATCGATCAGAAAGATGGGTGGAGGAAACGCACAGAAATCAGCCATGGCTC 173
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 TCTTCTTCTAATCGATCAGAAAGATGGGTGGAGGAAACGCACAGAAATCAGCGATGGCTC 120
Query 174 GTGCCAAAAACTTGGAGAAGGCTAAGGCTGCAGGAAAAGGTAGCCAATTGGAAGCTAACA 233
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 121 GTGCCAAAAACTTGGAGAAGGCAAAAGCTGCAGGAAAAGGTAGCCAATTGGAAGCTAACA 180
Query 234 AGAAAGCTATGTCGATTCAGTGCAAGGTTTGTATGCAAACATTCATCTGCACGACATCGG 293
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 181 AGAAAGCTATGTCGATTCAGTGCAAGGTTTGTATGCAAACATTTATCTGCACAACATCGG 240
Query 294 AAGTGAAATGCAGGGAGCACGCGGAGGCGAAGCATCCGAAAGCCGATGTTG-TCGCTTGT 352
|||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||
Sbjct 241 AAGTGAAATGCAGGGAGCACGCAGAGGCGAAGCATCCGAAAGCCGATGTTGAT-GCTTGT 299
Query 353 TTCCCTCACCTCAAGAAGTGATGAAAGCTAT-TAT---CTCAACTATAAAGGATTCCAAT 408
|||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||
Sbjct 300 TTCCCTCACCTCAAGAAGTGATGAAAACTATCTATTATCTCAACTATAAAGGATTCCAAT 359
Query 409 GTATAACGTATGGATCCTCATCTTTCCTATGTTTGTATCAAAGTCTCGACAA-ATTTTAT 467
||| ||||||||||||||| |||||||||||||||||||||||||| |||| |||| ||
Sbjct 360 GTAAAACGTATGGATCCTCTTCTTTCCTATGTTTGTATCAAAGTCTTGACAGTATTT-AT 418
Query 468 GGTTTCTATTTCTCTCTACTTGTTTCAACAATAAGTCTCTTGCTATGATTATATAATGAA 527
||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 419 GGTTTCTGCTTCTCTTTACTTTTTTCAACAATAAGTCTCTTGCTATGATTATATAATGAA 478
Query 528 GCTTTGTGTGGAACCtttttt 548
||||||| |||||| ||||||
Sbjct 479 GCTTTGTTTGGAAC-TTTTTT 498
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21214507484
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5