BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23093.1
Length=1743
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481182 jgi|Araly1|481182|fgenesh2_kg.4__242__AT2G23093.1 2431 0.0
> Ahg481182 jgi|Araly1|481182|fgenesh2_kg.4__242__AT2G23093.1
Length=1667
Score = 2431 bits (1316), Expect = 0.0
Identities = 1522/1622 (94%), Gaps = 12/1622 (1%)
Strand=Plus/Plus
Query 35 CTTTCTCCGGCTGATTTACCGGTGAATTTTGGATCGATGGGTGTCGTTATTGAGACCTTT 94
||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||| |||
Sbjct 1 CTTTCTCCGGCGGATTTACCGGTGACTTTTGGATCGATGGGTGTCGTAATTGAGACATTT 60
Query 95 ATTTGGGAACCAAGCTCAAGCTTCTTCATCTTCTTCTTCGTTTCCACATTTTTATCGATA 154
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 ATTTGGGAACCAAGCTCAAGCTTCTTCATCTTCTTCTTCGTTTCCACATTTTTGTCGATA 120
Query 155 TCTCTGTTTCCTTACTTGGCCAAAAACAGAACTTTTGGTAGCTTTGATCATTCTATTTCC 214
| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTCTGTTTCCTTACTTCGCCAAGAACAGAACTTTTGGTAGCTTTGATCATTCTATTTCC 180
Query 215 TCTTCTTTCGCTCGGTTCCAGAGATGGTTTCTAGCTATCTACACTCTCTCTTCAGTGATG 274
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTTCTTTCGTTCGGTTCCAGAGATGGTTTCTAGCTATCTACACTCTCTCTTCAGTGATG 240
Query 275 GAAGGTTTATTGTCAGTGTATGGAGAATTGGAGTTAACAACTTATGGCT-TAAGTAAAGA 333
|||||||||| ||||||||||||||||||||||||| || ||||||| | ||||||| ||
Sbjct 241 GAAGGTTTATGGTCAGTGTATGGAGAATTGGAGTTAGCATCTTATGG-TGTAAGTAAGGA 299
Query 334 ATCAATGGTGTTTTATCTCTGTGTTGGTTATTCGACCGCTCTTGTTCTTGGTCCTGTACT 393
||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||
Sbjct 300 ATCAATGGTGTTTTATCTCTGTGTTGGCTATTCGACTGCTCTTGTTCTTGGTCCTTTACT 359
Query 394 TGGTGTGGTTTCTGATCTCATAGGTCAGAAGAAAATTTGTC-TACTCTATTGTGTCTTGC 452
||||||| |||||||||| ||||||||||||| |||||| | ||||||||||||||||||
Sbjct 360 TGGTGTGCTTTCTGATCTTATAGGTCAGAAGAGAATTTG-CTTACTCTATTGTGTCTTGC 418
Query 453 ACCTTATTGTTGGTGTGTGGAAGAGGATTACAATGAGTCCTAGTGCTTGGTTTGCAAATG 512
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ACCTTGTTGTTGGTGTGTGGAAGAGGATTACAATGAGTCCTAGTGCTTGGTTTGCAAATG 478
Query 513 TTTTTCTCTCCCTTGCTGGTCTTGTATATTCATTTGGGTTTGAGACTTGGCTTGTTGTGG 572
||| |||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 479 TTTGTCTCTCTCTTGCTGGTCTCGTATATTCGTTTGGGTTTGAGACTTGGCTTGTTGTGG 538
Query 573 AACATGAAAAGCAAAGTCAGAGGAATGACTCGTTAAATGAGACATTCTGGTTGATGACTT 632
|||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| |||
Sbjct 539 AACATGAAAAGCAAAGTCAGCGGAATGACTCGTTGAATGAAACATTCTGGTTGATGGCTT 598
Query 633 TTCTTGAGTCTGCATCTTTAATTGGAGGTCAAGTTCTTGCAAATTGGCTTGTGGGTGAAA 692
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 599 TTCTTGAGTCTGCATCTTTAATTGGAGGTCAAGTTCTTGCAAATTGGCTTGTGGATGAAA 658
Query 693 ATGTTCAGGATGGGATTGCATTATCTGCTACGGCGTCTCTGCTCTTGTCTGTTGTGACTA 752
|||||||| |||| |||||||| |||||||||||||||||| |||||||| |||||||||
Sbjct 659 ATGTTCAGCATGGCATTGCATTGTCTGCTACGGCGTCTCTGTTCTTGTCTATTGTGACTA 718
Query 753 TTATTTGTATTGTCCAGACTGCAAAAGAGCCGTTGAAGACCCTTCCGTTTAGGGATTATT 812
| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 719 TCATTTGTATTGTCCAGACTGCAAAAGAGCCGTTGAAGACCCTCCCATTTAGGGATTATT 778
Query 813 CCACAGCTTTCTATGCGTATGTTCTTGGTGACAAAAGAATATGGTTTCTGGGAACTTCAC 872
|| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 779 CCGCAGCTTTCTATGCATATGTTCTTGGTGATAAAAGAATATGGTTTCTGGGAACTTCAC 838
Query 873 AAGCCTGTCTTCAGTTTTCCACTGCAGTCTTTTGGATTCTGTGGGCACCAACAATAGTGG 932
||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 839 AAGCCTGCCTCCAGTTTTCCACTGCAGTCTTTTGGATTCTGTGGGCACCAACCATAGTGG 898
Query 933 CTGATGGGCGTGAAGTGAATCTGGGATTGATATATCCATGTTTCTTGGGTTCAAGAATGC 992
|||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CTGACGGGAGAGAAGTGAATCTGGGATTGATATATCCATGTTTCTTGGGTTCAAGAATGC 958
Query 993 TTGGGAGTACTGTATTCCCATGGCTAATGAGTGGACAATCATTGCTCCGGCTTGAAGATT 1052
||||||||||||||||||||||||| ||||| ||||||||||| || || ||||||||||
Sbjct 959 TTGGGAGTACTGTATTCCCATGGCTTATGAGCGGACAATCATTACTTCGTCTTGAAGATT 1018
Query 1053 GCTTAGTCTACATATACGCACTACTTGGGATAGTGTTTTCTATAGTAGCCTATGATTATC 1112
|||||||||||||||| ||| |||||||| | ||||||||||||||||||||||||||||
Sbjct 1019 GCTTAGTCTACATATATGCAATACTTGGGGTTGTGTTTTCTATAGTAGCCTATGATTATC 1078
Query 1113 AGGAAATCCGAATCTTAGTAGTACTTTTCTGCTTATTTCATGGCTTTGCTGGACTGGCAC 1172
||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| | |
Sbjct 1079 AGGAAATCCGAATATTAGTAGTGCTTTTCTGCTTATTTCATGGCTTTGCCGGACTTTCCC 1138
Query 1173 TTCCTTTGCTTGCAAGATTAAGAACAATGTATGTACCAAATGAATTGCGTGGAGGGATGA 1232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TTCCTTTGCTTGCAAGATTAAGAACAATGTATGTACCAAATGAATTGCGTGGAGGGATGA 1198
Query 1233 TAAGCCTCTCTCAAGTTCCAGCCAATGCAGCTATTTTGTTTTTCTTAATCCAGAGAGGCT 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TAAGCCTCTCTCAAGTTCCAGCCAATGCAGCTATTTTGTTTTTCTTAATCCAGAGAGGCT 1258
Query 1293 ACTCTAACAAGATCGAGAACTCAACAATGATGGCTCTTGGTGCCATTTCTTTATTCACTG 1352
|||| |||||||| |||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct 1259 ACTCCAACAAGATTGAGAACCCAACAGTGATGGCTTTTGGTGCCATTTCTTTATTCACTG 1318
Query 1353 CATCTGGTTGTATATATATGTTGAGACGATGGGGAAAGTCACCACACCATGATTGGCACA 1412
||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||
Sbjct 1319 CATCTGGTTGTATATATTTACTGAGACGATGGGGAAAGTCACCACACCAAGATTGGCACA 1378
Query 1413 AATTATGATCCTGAGTAACTCGTG-G-TCTCTGGTTATGATACTTATGCGGAAGCAGGAC 1470
|||||||||||||||||| | ||| | ||||||||||||| ||||||||||||| |||||
Sbjct 1379 AATTATGATCCTGAGTAAGT-GTGTGCTCTCTGGTTATGAGACTTATGCGGAAGAAGGAC 1437
Query 1471 AAGGCAAAACGAAGATAAATCTA-CTGGAAACTCAAG-TTGGTCTATGATCTTGTGTTAA 1528
||||||| | |||| ||| ||| | ||||||||| ||||| |||||||| |||| ||
Sbjct 1438 TAGGCAAATCAAAGACAAACCTAACA--AAACTCAAGGTTGGTATATGATCTAGTGTCAA 1495
Query 1529 TGGTCTCGCTTCGATTTTGTAGCAGCATGAAGTGAGGAAACACAAAACCTTGGAAGTTCA 1588
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1496 TGGTCTCGCTTCGATTTTGTAGCAGCATGAAGTGAGGAAACACAAAACCTGGGAAGTTCA 1555
Query 1589 AAGATGCAATGAAAGCAGTATAAGAGGTTTGATTA-TTAGTTTAAGAGGATTCTATTATT 1647
|||||||| || |||||||||||||||||||||| ||||||| ||||||||||||| ||
Sbjct 1556 AAGATGCAGTGTAAGCAGTATAAGAGGTTTGATTTGTTAGTTTGAGAGGATTCTATTTTT 1615
Query 1648 TT 1649
||
Sbjct 1616 TT 1617
Score = 78.7 bits (42), Expect = 1e-13
Identities = 46/48 (96%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 1688 CTTTGGACCTTTTAGGCATTATTGTTTTACTAGTAAATATGAATGAAA 1735
||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1618 CTTTGGACCTTTTAGGCATTATTGTTTTAAAAGTAAATATGAATGAAA 1665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65400950665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5