BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G23093.1 Length=1743 Score E Sequences producing significant alignments: (Bits) Value Ahg481182 jgi|Araly1|481182|fgenesh2_kg.4__242__AT2G23093.1 2431 0.0 > Ahg481182 jgi|Araly1|481182|fgenesh2_kg.4__242__AT2G23093.1 Length=1667 Score = 2431 bits (1316), Expect = 0.0 Identities = 1522/1622 (94%), Gaps = 12/1622 (1%) Strand=Plus/Plus Query 35 CTTTCTCCGGCTGATTTACCGGTGAATTTTGGATCGATGGGTGTCGTTATTGAGACCTTT 94 ||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||| ||| Sbjct 1 CTTTCTCCGGCGGATTTACCGGTGACTTTTGGATCGATGGGTGTCGTAATTGAGACATTT 60 Query 95 ATTTGGGAACCAAGCTCAAGCTTCTTCATCTTCTTCTTCGTTTCCACATTTTTATCGATA 154 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 61 ATTTGGGAACCAAGCTCAAGCTTCTTCATCTTCTTCTTCGTTTCCACATTTTTGTCGATA 120 Query 155 TCTCTGTTTCCTTACTTGGCCAAAAACAGAACTTTTGGTAGCTTTGATCATTCTATTTCC 214 | ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 121 TTTCTGTTTCCTTACTTCGCCAAGAACAGAACTTTTGGTAGCTTTGATCATTCTATTTCC 180 Query 215 TCTTCTTTCGCTCGGTTCCAGAGATGGTTTCTAGCTATCTACACTCTCTCTTCAGTGATG 274 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TCTTCTTTCGTTCGGTTCCAGAGATGGTTTCTAGCTATCTACACTCTCTCTTCAGTGATG 240 Query 275 GAAGGTTTATTGTCAGTGTATGGAGAATTGGAGTTAACAACTTATGGCT-TAAGTAAAGA 333 |||||||||| ||||||||||||||||||||||||| || ||||||| | ||||||| || Sbjct 241 GAAGGTTTATGGTCAGTGTATGGAGAATTGGAGTTAGCATCTTATGG-TGTAAGTAAGGA 299 Query 334 ATCAATGGTGTTTTATCTCTGTGTTGGTTATTCGACCGCTCTTGTTCTTGGTCCTGTACT 393 ||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||| Sbjct 300 ATCAATGGTGTTTTATCTCTGTGTTGGCTATTCGACTGCTCTTGTTCTTGGTCCTTTACT 359 Query 394 TGGTGTGGTTTCTGATCTCATAGGTCAGAAGAAAATTTGTC-TACTCTATTGTGTCTTGC 452 ||||||| |||||||||| ||||||||||||| |||||| | |||||||||||||||||| Sbjct 360 TGGTGTGCTTTCTGATCTTATAGGTCAGAAGAGAATTTG-CTTACTCTATTGTGTCTTGC 418 Query 453 ACCTTATTGTTGGTGTGTGGAAGAGGATTACAATGAGTCCTAGTGCTTGGTTTGCAAATG 512 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 ACCTTGTTGTTGGTGTGTGGAAGAGGATTACAATGAGTCCTAGTGCTTGGTTTGCAAATG 478 Query 513 TTTTTCTCTCCCTTGCTGGTCTTGTATATTCATTTGGGTTTGAGACTTGGCTTGTTGTGG 572 ||| |||||| ||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 479 TTTGTCTCTCTCTTGCTGGTCTCGTATATTCGTTTGGGTTTGAGACTTGGCTTGTTGTGG 538 Query 573 AACATGAAAAGCAAAGTCAGAGGAATGACTCGTTAAATGAGACATTCTGGTTGATGACTT 632 |||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||| Sbjct 539 AACATGAAAAGCAAAGTCAGCGGAATGACTCGTTGAATGAAACATTCTGGTTGATGGCTT 598 Query 633 TTCTTGAGTCTGCATCTTTAATTGGAGGTCAAGTTCTTGCAAATTGGCTTGTGGGTGAAA 692 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 599 TTCTTGAGTCTGCATCTTTAATTGGAGGTCAAGTTCTTGCAAATTGGCTTGTGGATGAAA 658 Query 693 ATGTTCAGGATGGGATTGCATTATCTGCTACGGCGTCTCTGCTCTTGTCTGTTGTGACTA 752 |||||||| |||| |||||||| |||||||||||||||||| |||||||| ||||||||| Sbjct 659 ATGTTCAGCATGGCATTGCATTGTCTGCTACGGCGTCTCTGTTCTTGTCTATTGTGACTA 718 Query 753 TTATTTGTATTGTCCAGACTGCAAAAGAGCCGTTGAAGACCCTTCCGTTTAGGGATTATT 812 | ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 719 TCATTTGTATTGTCCAGACTGCAAAAGAGCCGTTGAAGACCCTCCCATTTAGGGATTATT 778 Query 813 CCACAGCTTTCTATGCGTATGTTCTTGGTGACAAAAGAATATGGTTTCTGGGAACTTCAC 872 || ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 779 CCGCAGCTTTCTATGCATATGTTCTTGGTGATAAAAGAATATGGTTTCTGGGAACTTCAC 838 Query 873 AAGCCTGTCTTCAGTTTTCCACTGCAGTCTTTTGGATTCTGTGGGCACCAACAATAGTGG 932 ||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 839 AAGCCTGCCTCCAGTTTTCCACTGCAGTCTTTTGGATTCTGTGGGCACCAACCATAGTGG 898 Query 933 CTGATGGGCGTGAAGTGAATCTGGGATTGATATATCCATGTTTCTTGGGTTCAAGAATGC 992 |||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 CTGACGGGAGAGAAGTGAATCTGGGATTGATATATCCATGTTTCTTGGGTTCAAGAATGC 958 Query 993 TTGGGAGTACTGTATTCCCATGGCTAATGAGTGGACAATCATTGCTCCGGCTTGAAGATT 1052 ||||||||||||||||||||||||| ||||| ||||||||||| || || |||||||||| Sbjct 959 TTGGGAGTACTGTATTCCCATGGCTTATGAGCGGACAATCATTACTTCGTCTTGAAGATT 1018 Query 1053 GCTTAGTCTACATATACGCACTACTTGGGATAGTGTTTTCTATAGTAGCCTATGATTATC 1112 |||||||||||||||| ||| |||||||| | |||||||||||||||||||||||||||| Sbjct 1019 GCTTAGTCTACATATATGCAATACTTGGGGTTGTGTTTTCTATAGTAGCCTATGATTATC 1078 Query 1113 AGGAAATCCGAATCTTAGTAGTACTTTTCTGCTTATTTCATGGCTTTGCTGGACTGGCAC 1172 ||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| | | Sbjct 1079 AGGAAATCCGAATATTAGTAGTGCTTTTCTGCTTATTTCATGGCTTTGCCGGACTTTCCC 1138 Query 1173 TTCCTTTGCTTGCAAGATTAAGAACAATGTATGTACCAAATGAATTGCGTGGAGGGATGA 1232 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1139 TTCCTTTGCTTGCAAGATTAAGAACAATGTATGTACCAAATGAATTGCGTGGAGGGATGA 1198 Query 1233 TAAGCCTCTCTCAAGTTCCAGCCAATGCAGCTATTTTGTTTTTCTTAATCCAGAGAGGCT 1292 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 TAAGCCTCTCTCAAGTTCCAGCCAATGCAGCTATTTTGTTTTTCTTAATCCAGAGAGGCT 1258 Query 1293 ACTCTAACAAGATCGAGAACTCAACAATGATGGCTCTTGGTGCCATTTCTTTATTCACTG 1352 |||| |||||||| |||||| ||||| |||||||| |||||||||||||||||||||||| Sbjct 1259 ACTCCAACAAGATTGAGAACCCAACAGTGATGGCTTTTGGTGCCATTTCTTTATTCACTG 1318 Query 1353 CATCTGGTTGTATATATATGTTGAGACGATGGGGAAAGTCACCACACCATGATTGGCACA 1412 ||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||| Sbjct 1319 CATCTGGTTGTATATATTTACTGAGACGATGGGGAAAGTCACCACACCAAGATTGGCACA 1378 Query 1413 AATTATGATCCTGAGTAACTCGTG-G-TCTCTGGTTATGATACTTATGCGGAAGCAGGAC 1470 |||||||||||||||||| | ||| | ||||||||||||| ||||||||||||| ||||| Sbjct 1379 AATTATGATCCTGAGTAAGT-GTGTGCTCTCTGGTTATGAGACTTATGCGGAAGAAGGAC 1437 Query 1471 AAGGCAAAACGAAGATAAATCTA-CTGGAAACTCAAG-TTGGTCTATGATCTTGTGTTAA 1528 ||||||| | |||| ||| ||| | ||||||||| ||||| |||||||| |||| || Sbjct 1438 TAGGCAAATCAAAGACAAACCTAACA--AAACTCAAGGTTGGTATATGATCTAGTGTCAA 1495 Query 1529 TGGTCTCGCTTCGATTTTGTAGCAGCATGAAGTGAGGAAACACAAAACCTTGGAAGTTCA 1588 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1496 TGGTCTCGCTTCGATTTTGTAGCAGCATGAAGTGAGGAAACACAAAACCTGGGAAGTTCA 1555 Query 1589 AAGATGCAATGAAAGCAGTATAAGAGGTTTGATTA-TTAGTTTAAGAGGATTCTATTATT 1647 |||||||| || |||||||||||||||||||||| ||||||| ||||||||||||| || Sbjct 1556 AAGATGCAGTGTAAGCAGTATAAGAGGTTTGATTTGTTAGTTTGAGAGGATTCTATTTTT 1615 Query 1648 TT 1649 || Sbjct 1616 TT 1617 Score = 78.7 bits (42), Expect = 1e-13 Identities = 46/48 (96%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 1688 CTTTGGACCTTTTAGGCATTATTGTTTTACTAGTAAATATGAATGAAA 1735 ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1618 CTTTGGACCTTTTAGGCATTATTGTTTTAAAAGTAAATATGAATGAAA 1665 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65400950665 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5