BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23096.1
Length=825
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481183 jgi|Araly1|481183|fgenesh2_kg.4__243__AT2G23096.1 1173 0.0
> Ahg481183 jgi|Araly1|481183|fgenesh2_kg.4__243__AT2G23096.1
Length=818
Score = 1173 bits (635), Expect = 0.0
Identities = 770/832 (93%), Gaps = 22/832 (3%)
Strand=Plus/Plus
Query 1 ATGAGATCATATGGCAAAGAGAAGAAGTTAGTGTTTCCGTACGTTTTCATT-GCGTGTTG 59
||||||||||||||||||||||||||||||| |||||| ||||||||| || ||||||||
Sbjct 1 ATGAGATCATATGGCAAAGAGAAGAAGTTAGGGTTTCCTTACGTTTTC-TTGGCGTGTTG 59
Query 60 CTTCTTCTTGGCCATCTTCGGTTTCTGTTTCTTCAATCTT-TTCTCTCAGGGAATTAGTT 118
|||||||||||||||||||||||||||||||||||||||| || |||||| ||| ||||
Sbjct 60 CTTCTTCTTGGCCATCTTCGGTTTCTGTTTCTTCAATCTTCTT-TCTCAGATAATAAGTT 118
Query 119 TCAGTGAGATTCCGACAACAAGAAGATCTGTTAACGATGAAACTGATTCTTTGGATCATG 178
||||||||||| |||| | |||||||||| ||||| |||||||| |||||||||||||
Sbjct 119 TCAGTGAGATTTCGAC-GC--GAAGATCTGTAAACGAAGAAACTGAATCTTTGGATCATG 175
Query 179 GTTCTTCTGTCTCTAACATTCCTTTTCATGGTTTAAGCTGGAATCCTCGAGTTTTTTACT 238
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 G---TTCTGTCTCTAACATTCCTTTTCATGGTTTAAGCTGGAATCCTCGAGTTTTTTACT 232
Query 239 TGCCGAATTTCGCAACGAAACAACAATGTGAAGCCGTTATCGATATGGCAAAGCCTAAGC 298
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 TGCCGAATTTCGCAACTAAACAACAATGTGAAGCCGTTATCGATATGGCAAAGCCTAAGC 292
Query 299 TTAAGCCTTCTAC-GCTTGCTTTAAGGAAAGGTGAAACCGCAGAAACCACTCAAAAC--T 355
||||||||||| | |||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 293 TTAAGCCTTCT-CTGCTTGCTTTAAGGAAAGGCGAAACCGCAGAAACCACTCAAAACGTT 351
Query 356 --ACCGGAGTCTTCATCAGCACACCGATGAAGACGAATCCGGGGTTTTAGCTGCCATCGA 413
| | || || | || | || |||||||| ||||||||| ||||| ||||||||||
Sbjct 352 AGAAC-AAG-GTT-A-AAGAAAACTGATGAAGATGAATCCGGGCTTTTAACTGCCATCGA 407
Query 414 AGAGAAAATAGCTTTAGCCACAAGATTCCCCAAAGATTATTACGAATCATTCAACATCTT 473
||||||||||||||||||||| ||| |||| | |||||||||||||||||||||||||||
Sbjct 408 AGAGAAAATAGCTTTAGCCACGAGAATCCCTATAGATTATTACGAATCATTCAACATCTT 467
Query 474 GAGGTATCAGCTTGGCCAGAAGTATGATTCACATTATGATGCTTTCCATTCAGCAGAGTA 533
||||||||||||||||||||| |||||||||||| | |||||||||||| |||||| |||
Sbjct 468 GAGGTATCAGCTTGGCCAGAAATATGATTCACATCACGATGCTTTCCATCCAGCAGTGTA 527
Query 534 TGGTCCCCTA-ATAAGCCAAAGGGTCGTGACTTTCCTATTGTTCTTATCGAGTGTCGAAG 592
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 TGGTCCCC-AGATAAGCCAAAGGGTCGTGACTTTCCTATTGTTCTTATCGAGTGTCGAAG 586
Query 593 AAGGTGGAGAGACGATGTTCCCATTCGAGAATGGGAGAAATATGAATGGAAGATATGATT 652
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 587 AAGGTGGAGAGACGATGTTCCCATTCGAGAATGGGAGAAACATGAATGGAAGTTATGATT 646
Query 653 ATGAGAAGTGTGTTGGTCTGAAAGTAAAGCCGCGACAAGGAGACGCCATTTTCTTCTACA 712
||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 647 ATGAGAAGTGTATTGGTCTGAGAGTAAAACCGCGACAAGGAGACGCCATTTTCTTCTACA 706
Query 713 ATTTGTTTCCAAATGGAACGATCGATCAAACATCTCTACATGGAAGCTGTCCTGTTATCA 772
||||| | |||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 707 ATTTGCTCCCAAATGGAACGATCGATCAGACATCTCTCCATGGAAGCTGTCCTGTTATCA 766
Query 773 AGGGTGAGAAATGGGTTGCCACCAAATGGATAAGAGACCAAACATATGATTG 824
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 AGGGTGAGAAATGGGTTGCCACCAAATGGATAAGAGACCAAACATATGATTG 818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30498333600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5