BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G23110.1 Length=591 Score E Sequences producing significant alignments: (Bits) Value Ahg899618 jgi|Araly1|899618|Al_scaffold_0004_268 399 8e-111 > Ahg899618 jgi|Araly1|899618|Al_scaffold_0004_268 Length=279 Score = 399 bits (216), Expect = 8e-111 Identities = 258/279 (92%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 97 ATGGAGGATCAGAAAAAGCCACCAACGACCGAGCAAGAAGTGAAAGAAGTTAAAAACGAC 156 ||||||||| ||||||||||||||||||| |||||| ||| ||||||||||||||||||| Sbjct 1 ATGGAGGATAAGAAAAAGCCACCAACGACGGAGCAACAAGAGAAAGAAGTTAAAAACGAC 60 Query 157 GACCTCGAGTCTATCAAGACCCCATACTTGGACTATGATAACTTGGAAGATTACAAGATG 216 ||| | ||||||||||||| |||||| ||||| ||||||||||||||||||||||||||| Sbjct 61 GACGTTGAGTCTATCAAGAGCCCATATTTGGATTATGATAACTTGGAAGATTACAAGATG 120 Query 217 AAAGGTTACGGAGCACAAGGCCACCAAGAGCCTAAACTCGGTATGGGAGGTGGAGCCACC 276 ||||||||||||||||| ||||||||||| ||||| || || |||||||||||||||||| Sbjct 121 AAAGGTTACGGAGCACATGGCCACCAAGAACCTAAGCTTGGCATGGGAGGTGGAGCCACC 180 Query 277 GATGCTCCCACTCCTTCAGGCGGTCTTGGACGCGGTGGAGGCGCTGCATCGACGGATCTT 336 |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 181 GATGCTCCTACTCCTTCAGGGGGTCTTGGCCGCGGTGGAGGCGCTGCATCGACGGATCTT 240 Query 337 TCTTCTACCGATGCGATTAACCGTCAGGGCGTTCCGTGA 375 |||||||||| | ||||||||| |||||| ||||||||| Sbjct 241 TCTTCTACCGGTTCGATTAACCATCAGGGAGTTCCGTGA 279 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21634218963 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5