BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23110.1
Length=591
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899618 jgi|Araly1|899618|Al_scaffold_0004_268 399 8e-111
> Ahg899618 jgi|Araly1|899618|Al_scaffold_0004_268
Length=279
Score = 399 bits (216), Expect = 8e-111
Identities = 258/279 (92%), Gaps = 0/279 (0%)
Strand=Plus/Plus
Query 97 ATGGAGGATCAGAAAAAGCCACCAACGACCGAGCAAGAAGTGAAAGAAGTTAAAAACGAC 156
||||||||| ||||||||||||||||||| |||||| ||| |||||||||||||||||||
Sbjct 1 ATGGAGGATAAGAAAAAGCCACCAACGACGGAGCAACAAGAGAAAGAAGTTAAAAACGAC 60
Query 157 GACCTCGAGTCTATCAAGACCCCATACTTGGACTATGATAACTTGGAAGATTACAAGATG 216
||| | ||||||||||||| |||||| ||||| |||||||||||||||||||||||||||
Sbjct 61 GACGTTGAGTCTATCAAGAGCCCATATTTGGATTATGATAACTTGGAAGATTACAAGATG 120
Query 217 AAAGGTTACGGAGCACAAGGCCACCAAGAGCCTAAACTCGGTATGGGAGGTGGAGCCACC 276
||||||||||||||||| ||||||||||| ||||| || || ||||||||||||||||||
Sbjct 121 AAAGGTTACGGAGCACATGGCCACCAAGAACCTAAGCTTGGCATGGGAGGTGGAGCCACC 180
Query 277 GATGCTCCCACTCCTTCAGGCGGTCTTGGACGCGGTGGAGGCGCTGCATCGACGGATCTT 336
|||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 181 GATGCTCCTACTCCTTCAGGGGGTCTTGGCCGCGGTGGAGGCGCTGCATCGACGGATCTT 240
Query 337 TCTTCTACCGATGCGATTAACCGTCAGGGCGTTCCGTGA 375
|||||||||| | ||||||||| |||||| |||||||||
Sbjct 241 TCTTCTACCGGTTCGATTAACCATCAGGGAGTTCCGTGA 279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21634218963
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5