BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G23120.1

Length=592
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg481185 jgi|Araly1|481185|fgenesh2_kg.4__245__AT2G23120.1          440    5e-123


> Ahg481185 jgi|Araly1|481185|fgenesh2_kg.4__245__AT2G23120.1
Length=417

 Score =  440 bits (238),  Expect = 5e-123
 Identities = 323/361 (89%), Gaps = 17/361 (5%)
 Strand=Plus/Plus

Query  96   ACGACGGAGAAGAAAACGGAGCAAGTGAAAGACAACGACTTGCCGACCGATAGCCCTTAC  155
            ||||||||||||||||| ||||||||||||||||||||||| || ||| |||||||||||
Sbjct  26   ACGACGGAGAAGAAAACAGAGCAAGTGAAAGACAACGACTTACCAACCAATAGCCCTTAC  85

Query  156  ATGGCGACGGGTACTTTGGAAGATTACAAATTGAAAGCTTATGGAGCCGAAGGTCACCAA  215
            ||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  86   ATGGCCACAGGTACTTTGGAAGATTACAAACTGAAAGCTTATGGAGCCGAAGGTCACCAA  145

Query  216  GAGCCTACTCCTGGTCTTGGAGGTGGCTCCACCGATGCTCCTACTCCTTCTGGCGACGCA  275
            || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct  146  GAACCTACGCCTGGTCTTGGAGGTGGCTCCACCGATGCTCCTACTCCTTCTGGCGACAAA  205

Query  276  CCCGCCGCCACTACCACCG-ATGCGAAAGCTCCGTGaaaaaaaaGAAAGACTATAATAAT  334
            ||||||||||| ||||| | | || |||||||||||||||| || || ||||||||||||
Sbjct  206  CCCGCCGCCACCACCACTGGA-GCCAAAGCTCCGTGAAAAATAA-AA-GACTATAATAAT  262

Query  335  GAACGGGTTTTGTGGATCGTCGGAAAACAA-A------CCCATAATTGTAGTAT-GTTCA  386
            |||||||||||||||||| |||||||| || |      |||| ||||||||||| |||||
Sbjct  263  GAACGGGTTTTGTGGATCTTCGGAAAAAAAGAAAAAAACCCAAAATTGTAGTATTGTTCA  322

Query  387  ATAACTGATCCAGCTTCGTTT-----CTTAACGTTTTTATGGTTTAATTAAAAATGTATT  441
            ||||||||||||||||| |||     ||||||||||||||||||| | ||||||||||||
Sbjct  323  ATAACTGATCCAGCTTCTTTTTATTTCTTAACGTTTTTATGGTTTGACTAAAAATGTATT  382

Query  442  T  442
            |
Sbjct  383  T  383



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21672374552


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5