BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23142.1
Length=444
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899623 jgi|Araly1|899623|Al_scaffold_0004_273 424 4e-118
Ahg947997 jgi|Araly1|947997|scaffold_704226.1 159 1e-38
Ahg494134 jgi|Araly1|494134|fgenesh2_kg.7__3567__AT5G38435.1 122 2e-27
> Ahg899623 jgi|Araly1|899623|Al_scaffold_0004_273
Length=693
Score = 424 bits (229), Expect = 4e-118
Identities = 333/381 (87%), Gaps = 15/381 (4%)
Strand=Plus/Plus
Query 46 GGATTGAATAATGCGAAA-TTCAACGaaaaaaaCTCCGTAATTTTTAAGAGTTCTCTTGG 104
||||||| |||||| ||| ||||||||||||||||| ||||||||||||| | |||||||
Sbjct 283 GGATTGAGTAATGC-AAAGTTCAACGAAAAAAACTCTGTAATTTTTAAGAATGCTCTTGG 341
Query 105 TCCGAAAAAACTTCTCAGGA-TTCATTGTACATCAGAAC-ACGACGACACCGACTACGTT 162
||| |||||| ||||||||| ||| ||||||||||| || ||||||| | | |||| ||
Sbjct 342 TCCTAAAAAAGTTCTCAGGATTTC-TTGTACATCAG-ACAACGACGAAATAGGCTACATT 399
Query 163 TACCTGAGACATGGACAAACT-TACGC-ATTCAGTTTTCATGATAGTGTCTTGAAAACTA 220
| | ||| || |||||||| | ||| | ||| ||||||||||||||||| || ||||| |
Sbjct 400 TTCTTGAAACGTGGACAAA-TCTAC-CAATTTAGTTTTCATGATAGTGTTTTCAAAACCA 457
Query 221 TATTTGATTGTGAGTTAAAGCAA-GGAA---GTAGTTATTATAATTACAACTTTTATGCA 276
|||||||||||||||| | || |||| || ||| |||| ||||||| |||||||||
Sbjct 458 AATTTGATTGTGAGTTATCG-AAGGGAAGTGGTGGTTTTTATGATTACAATTTTTATGCA 516
Query 277 AGATTTAGGGCATATAAAGGTGGAGGTCTGATAGTTCACTACGGTAAAAAGAACTTTTGG 336
| |||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 517 AAATTTAGGGCATATACAGGTGGCGGTCTCATAGTTCACTACGGTAAAAAGAACTTTTGG 576
Query 337 GATGCTAGAGAAGATGGTATTTACTTCACACATGGTAAAGAAACACCTAAATTAGAGTAT 396
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 577 GAAGCTAGAGAAGATGGTATTTACTTCACACATGGTAAAGAAATACCTAAATTAGAGTAT 636
Query 397 AAATGGATCCCCGGGGATCCC 417
|||||||||||||| ||||||
Sbjct 637 AAATGGATCCCCGGAGATCCC 657
> Ahg947997 jgi|Araly1|947997|scaffold_704226.1
Length=445
Score = 159 bits (86), Expect = 1e-38
Identities = 316/421 (75%), Gaps = 39/421 (9%)
Strand=Plus/Plus
Query 1 ATGAATTGTTTTTCTTATTTTTTCCTTGTTATTATATTATGTGCAGGATTGAATAATGCG 60
|||||| || | |||| |||| | || |||||| ||| |||| |||||||| ||| ||
Sbjct 21 ATGAATCGTCTCTCTTGTTTTCTACTCGTTATTGGATTGTGTGTAGGATTGAGTAACGC- 79
Query 61 A-AATTC-AA-CG-a--a-aaaaaCTCCGTAAT-TTTTAAGAGTTCTCTTGGTCCGAAAA 112
| | ||| || | | | |||||||| || || || |||||||| |||||| |||||
Sbjct 80 AGATTTCAAATGGAATGAGAAAAACTCTGT-ATACTTCAAGAGTTCCCTTGGT-CGAAAC 137
Query 113 AACT-TC-TCAGGATTCATTGTACATCAGAACACGACGAC-A-C-CGAC-TACGTTTACC 166
|| | || | | ||||||||| ||||| || |||||||| | | | | | | |||
Sbjct 138 AA-TGTCTTGAAGATTCATTGCACATC--AA-ACGACGACAATCTAGGCTTCCATTT-TT 192
Query 167 TGAGACATGGACAAACTTACGCA-TTCAGTTTTCATGATAGTGTCT-TGAAAACTA-TAT 223
|| | | ||||||||| || | | || ||||| ||||||||||| | ||| | | | ||
Sbjct 193 TGCGCCCTGGACAAACCTATG-ATTTTAGTTTCCATGATAGTGT-TGTGAGATC-AGAAT 249
Query 224 TTGATTGTGAGTTAAAGCAAGGAAGTAGTTATTATAATTACAACTTTTATGCA-AGATTT 282
|| |||||| ||| |||||| | || || || ||| ||| ||||| | |||
Sbjct 250 TTTTTTGTGATTTATGGCAAGG--G--CCTA--AT--TT-CAAGTTTCATGCATCG-TTT 299
Query 283 AGGGCATATAAAGGTGGAGGTCTGATAGTTCACTACGGTAAAAAGAACTTTTGGGATGCT 342
| ||||||| ||||| | ||||| |||||||| || ||||||||||||||||||||||||
Sbjct 300 ATGGCATATGAAGGTAGTGGTCTCATAGTTCATTATGGTAAAAAGAACTTTTGGGATGCT 359
Query 343 AGAGAAGATGGTATTTACTTCACACATGGTAAAGAAACACCTAAATTAGAGTATAAATGG 402
||||||||||| || || ||||| ||||| ||||||| || || ||||||||||| |||
Sbjct 360 AGAGAAGATGGAATCTATTTCACTCATGGCAAAGAAATGCCCAAGTTAGAGTATAAGTGG 419
Query 403 A 403
|
Sbjct 420 A 420
> Ahg494134 jgi|Araly1|494134|fgenesh2_kg.7__3567__AT5G38435.1
Length=468
Score = 122 bits (66), Expect = 2e-27
Identities = 111/133 (83%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 272 ATGCAAGATTTAGGGCATATAAAGGTGGAGGTCTGATAGTTCACTACGGTAAAAAGAACT 331
||||| ||||| ||||||| ||||||| ||| | |||||||| || |||||||||||||
Sbjct 266 ATGCATCATTTATGGCATATGAAGGTGGTGGTTTCATAGTTCATTATGGTAAAAAGAACT 325
Query 332 TTTGGGATGCTAGAGAAGATGGTATTTACTTCACACATGGT-AAAGAAACACCTAAATTA 390
||||||||||||||||||| || || || ||||| ||||| ||| ||| || || |||
Sbjct 326 TTTGGGATGCTAGAGAAGACGGGATCTATTTCACCCATGGCCAAA-AAATGCCCAAGTTA 384
Query 391 GAGTATAAATGGA 403
|||||||| ||||
Sbjct 385 GAGTATAAGTGGA 397
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16025347380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5