BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23148.1
Length=539
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932302 jgi|Araly1|932302|scaffold_400290.1 573 4e-163
Ahg899623 jgi|Araly1|899623|Al_scaffold_0004_273 368 2e-101
> Ahg932302 jgi|Araly1|932302|scaffold_400290.1
Length=473
Score = 573 bits (310), Expect = 4e-163
Identities = 400/442 (90%), Gaps = 11/442 (2%)
Strand=Plus/Plus
Query 1 AAATCTAAGAAACAATGAATTGTTTTTCGTTTTCTTTTA-TTATTATTGTGTTATGTGCA 59
|||||||| ||| |||||||| |||||||| || ||||| || ||||||| || ||||||
Sbjct 7 AAATCTAAAAAATAATGAATTTTTTTTCGTATT-TTTTAGTTGTTATTGTATTGTGTGCA 65
Query 60 GGATCGAGTAATGCGAAGTTCAGA-GaaaaaaaTTCTGTAGTTTTTAAAAATTCTCTTGG 118
|||| ||||||||||||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct 66 GGATTGAGTAATGCGAAGTTCA-ACGAAAAAAATTCTGTAGTTTTTAAGAATTCTCTTGG 124
Query 119 TGTGAAAAACGTTCTCAAGATTCATTGTACATCAAAAGACGACGACCTAGGCTACCACTA 178
| ||||||||||||||||||||||||| ||||||||||||||| ||||||||| | ||
Sbjct 125 TCCCAAAAACGTTCTCAAGATTCATTGTATATCAAAAGACGACGATCTAGGCTACAATTA 184
Query 179 TTTGAGACCTGGAGTACAAATCTACGAATTTCGTTTTCATGATAGTGTTTTGAAAACTAA 238
||| |||||| | | |||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 185 TTTAAGACCT-G-G-ACAAATCTACGAATTTAGTTTTCATGATAGTGTTTTGAAAACCAA 241
Query 239 ATTTGATTGTGAGTTATGGCAGGGACGTGGTCCTACTTACAAGTTTTATGCAAATTTTAG 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 242 ATTTGATTGTGAGTTATGGCAGGGACGTGGTCCTACTTACAAGTTTTATGCAAACTTTCG 301
Query 299 GGCATATAAAAGTGGCGGTCTGATAGCTCACTA-CGGTAAAAAGAA-TATTTGGGAAGCT 356
||| || ||| ||||||||||||||| |||| | |||||||||||| | ||||||||| |
Sbjct 302 GGCGTACAAAGGTGGCGGTCTGATAGTTCAC-AGCGGTAAAAAGAACT-TTTGGGAAGTT 359
Query 357 AGAGAAGATGGTATTTACTTCACACATGGTAAAGAAATTCCTAAATTAGAGTATAAATGG 416
|||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct 360 AGAGAAGATGGTATTTACTTTACACATGGTAAGGAAATACCTAAATTAGAGTATAAATGG 419
Query 417 AGCCCCATAGGAAAGCCTCCTA 438
|||||||||||| |||| ||||
Sbjct 420 AGCCCCATAGGAGAGCCCCCTA 441
> Ahg899623 jgi|Araly1|899623|Al_scaffold_0004_273
Length=693
Score = 368 bits (199), Expect = 2e-101
Identities = 320/375 (85%), Gaps = 21/375 (6%)
Strand=Plus/Plus
Query 60 GGATCGAGTAATGCGAAGTTCAGA-GaaaaaaaTTCTGTAGTTTTTAAAAATTCTCTTGG 118
|||| ||||||||| ||||||| | |||||||| |||||| ||||||| ||| |||||||
Sbjct 283 GGATTGAGTAATGCAAAGTTCA-ACGAAAAAAACTCTGTAATTTTTAAGAATGCTCTTGG 341
Query 119 T-GTGAAAAACGTTCTCAAGA-TTCATTGTACATCA-AAAGACGACGACCTAGGCTACCA 175
| | ||||| ||||||| || ||| |||||||||| | | ||||||| ||||||| ||
Sbjct 342 TCCT-AAAAAAGTTCTCAGGATTTC-TTGTACATCAGACA-ACGACGAAATAGGCTA-CA 397
Query 176 CTAT-TTGAGACCTGGAGTACAAATCTACGAATTTCGTTTTCATGATAGTGTTTTGAAAA 234
| | |||| || | | | |||||||||| ||||| ||||||||||||||||||| ||||
Sbjct 398 TTTTCTTGAAACGT-G-G-ACAAATCTACCAATTTAGTTTTCATGATAGTGTTTTCAAAA 454
Query 235 CTAAATTTGATTGTGAGTTATGGCAGGG-A--CGTGG-TCCTA--CTTACAAGTTTTATG 288
| ||||||||||||||||||| | |||| | |||| | || |||||| |||||||
Sbjct 455 CCAAATTTGATTGTGAGTTATCGAAGGGAAGTGGTGGTTTTTATGATTACAATTTTTATG 514
Query 289 CAAATTTTAGGGCATATAAAAGTGGCGGTCTGATAGCTCACTACGGTAAAAAGAA-TATT 347
|||| ||||||||||||| | |||||||||| |||| |||||||||||||||||| | ||
Sbjct 515 CAAAATTTAGGGCATATACAGGTGGCGGTCTCATAGTTCACTACGGTAAAAAGAACT-TT 573
Query 348 TGGGAAGCTAGAGAAGATGGTATTTACTTCACACATGGTAAAGAAATTCCTAAATTAGAG 407
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 574 TGGGAAGCTAGAGAAGATGGTATTTACTTCACACATGGTAAAGAAATACCTAAATTAGAG 633
Query 408 TATAAATGGAGCCCC 422
|||||||||| ||||
Sbjct 634 TATAAATGGATCCCC 648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19650128335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5