BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23150.1
Length=1769
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899624 jgi|Araly1|899624|Al_scaffold_0004_274 2394 0.0
Ahg496866 jgi|Araly1|496866|fgenesh2_kg.8__2682__AT5G67330.1 736 0.0
Ahg923008 jgi|Araly1|923008|scaffold_104289.1 678 0.0
Ahg905989 jgi|Araly1|905989|Al_scaffold_0003_3117 171 2e-41
> Ahg899624 jgi|Araly1|899624|Al_scaffold_0004_274
Length=1524
Score = 2394 bits (1296), Expect = 0.0
Identities = 1454/1531 (95%), Gaps = 8/1531 (1%)
Strand=Plus/Plus
Query 10 ATGCCACAACTCGAGAACAACGAGCCACTTCTAATCAACGAGGAAGAAGAAGAAGAAACA 69
||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1 ATGTCACAACTCGAGAACAACGAGCCACTTCTGATCAAC---GAAGAAGAAGAAGAAACA 57
Query 70 GCGTACGATGAAACAGAGAAGGTACATATCGTAAGAAACGAAGAGGAGGACGATCTAGAA 129
||||||||||||||||||| |||||| ||||| ||||||| | | |||||||||||||||
Sbjct 58 GCGTACGATGAAACAGAGATGGTACACATCGTGAGAAACG-A-A-GAGGACGATCTAGAA 114
Query 130 CACGGCGTCGGATGCGGCGGCGCACCACCGTTCTCATGGAAGAAGCTATGGTTATTCACC 189
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 115 CACGGCGTCGGATGCGGCGGCGCACCACCGTTCTCATGGAAGAAGCTCTGGTTATTCACC 174
Query 190 GGACCTGGGTTTTTAATGAGCATTGCGTTTTTAGATCCAGGGAATCTCGAAGGAGATCTT 249
||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 175 GGACCAGGGTTTTTAATGAGCATTGCGTTTCTCGATCCAGGGAATCTCGAAGGAGATCTT 234
Query 250 CAAGCCGGTGCGGTTGCTGGGTACTCTTTGTTATGGCTTCTCATGTGGGCAACAGCAATG 309
|||||||||||| ||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 235 CAAGCCGGTGCGATTGCTGGGTACTCGTTGTTATGGCTTCTTATGTGGGCAACAGCGATG 294
Query 310 GGTCTTTTGGTTCAGCTTTTGTCGGCTAGGCTTGGTGTTGCGACAGGTCGTCACTTAGCT 369
||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 295 GGTCTATTGGTTCAGCTTTTGTCTGCGAGGCTTGGTGTTGCGACAGGTCGTCACTTAGCT 354
Query 370 GAGCTTTGTCGTGATGAGTATCCTACTTGGGCAAGAATGGTTTTGTGGGTTATGGCTGAA 429
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 355 GAGCTTTGTCGTGATGAATATCCGACTTGGGCAAGAATGGTTTTGTGGGTTATGGCTGAA 414
Query 430 TTGGCTTTGATTGGATCTGATATTCAAGAAGTTATTGGTAGTGCTATTGCTATCAAGATT 489
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 415 TTGGCTTTGATTGGAGCTGATATTCAAGAAGTTATTGGTAGTGCTATTGCTATTAAGATT 474
Query 490 TTGAGTAATGGGATTTTGCCTCTTTGGGCTGGTGTTGTTATTACTGCTCTTGATTGTTTC 549
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 475 TTGAGTAATGGGATTTTGCCTCTTTGGGCTGGTGTTCTTATCACTGCTCTTGATTGTTTC 534
Query 550 GTCTTCTTGTTTCTTGAGAACTACGGAATAAGGAAGCTCGAGGCTGTGTTTGCAGTTCTT 609
|||||||||||||||||||| |||||||| |||||||||||||| || ||||| ||||||
Sbjct 535 GTCTTCTTGTTTCTTGAGAATTACGGAATCAGGAAGCTCGAGGCGGTTTTTGCGGTTCTT 594
Query 610 ATCGCTACAATGGGAGTCTCATTCGCTTGGATGTTTGGTCAAGCTAAGCCAAGTGGCTCT 669
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 ATTGCTACAATGGGAGTCTCATTCGCTTGGATGTTTGGTCAAGCTAAGCCAAGTGGCTCT 654
Query 670 GAGCTTCTCATTGGGATTTTGGTACCGAAACTGAGTTCAAGAACGATACAGAAAGCAGTT 729
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GAACTTCTCATTGGGATATTGGTACCGAAACTGAGTTCAAGAACGATACAGAAAGCAGTT 714
Query 730 GGAGTTGTGGGTTGCATTATAATGCCACACAATGTGTTTCTTCACTCAGCTCTTGTTCAA 789
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 715 GGAGTTGTGGGTTGTATTATAATGCCCCACAATGTGTTTCTTCACTCAGCTCTTGTTCAA 774
Query 790 TCTAGAGAAGTCGATAAACGACAGAAATACCGAGTCCAAGAAGCGCTAAACTACTACACA 849
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 775 TCTAGAGAAGTCGATAAACGACAGAAATACCGAGTTCAAGAAGCGCTAAACTACTACACC 834
Query 850 ATAGAATCCACAATTGCTCTTTTCATCTCCTTTTTGATCAATCTGTTTGTCACAACTGTT 909
|| ||||| |||||||||||||| |||||||| |||||||||||||||||||||| |||
Sbjct 835 ATTGAATCAACAATTGCTCTTTTTGTCTCCTTTATGATCAATCTGTTTGTCACAACGGTT 894
Query 910 TTCGCCAAAGGGTTTTATAATACTGACCTCGCCAATAGCATCGGTTTGGTTAACGCGGGA 969
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 895 TTCGCCAAAGGGTTTTATAATACTGACCTCGCCGATAGCATTGGTTTGGTTAACGCGGGA 954
Query 970 CAGTATCTTCAGGAGAAATATGGAGGCGGTGTGTTCCCGATACTATACATTTGGGCGATC 1029
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 955 CAGTATCTTCAGGAGAAATATGGAGGCGGTGTGTTCCCGATACTATACATTTGGGCAATC 1014
Query 1030 GGGCTATTAGCTGCTGGCCAAAGCAGCACTATTACCGGTACATATGCGGGACAGTTCATA 1089
||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |||||
Sbjct 1015 GGGCTATTAGCTGCTGGACAAAGCAGCACTATTACTGGTACATACGCGGGACAATTCATC 1074
Query 1090 ATGGGCGGGTTTCTTAATTTCAAAATGAAGAAATGGTTGAGAGCTTTGATCACACGAAGC 1149
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1075 ATGGGCGGGTTTCTTAATTTCAGAATGAAGAAATGGTTGAGAGCTTTGATCACACGAAGC 1134
Query 1150 TGCGCTATCATTCCAACTATTATCGTTGCGCTAGTGTTTGATTCATCGGAAGCTACACTC 1209
||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1135 TGCGCAATCATTCCAACTATTATCGTTGCTCTAGTGTTTAATTCATCGGAAGCTACACTC 1194
Query 1210 GATGTCTTAAACGAGTGGCTTAACGTGCTTCAGTCCATTCAAATCCCCTTTGCACTCATT 1269
||||||||||| |||||||||||||||||||| ||| ||||||| |||||||||||||||
Sbjct 1195 GATGTCTTAAATGAGTGGCTTAACGTGCTTCAATCCGTTCAAATTCCCTTTGCACTCATT 1254
Query 1270 CCCTTACTTTGTTTGGTCTCCAAGGAACAAATCATGGGTAGCTTCAAGATTGGTCCTTTG 1329
||||| || |||||||||||||| |||||||||||||| |||||||| || |||||||||
Sbjct 1255 CCCTTGCTGTGTTTGGTCTCCAAAGAACAAATCATGGGCAGCTTCAAAATCGGTCCTTTG 1314
Query 1330 TACAAGACAATCGCGTGGCTTGTTGCTGCGCTCGTGATAATGATCAACGGTTATCTTTTG 1389
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1315 TACAAGACAATTGCGTGGCTTGTTGCTGCGCTCGTGATAATGATCAACGGTTATCTATTG 1374
Query 1390 TTGGAGTTCTTCTCCAATGAGGTTAGTGGCATAGTCTATACCGGTTTTGTGACACTGTTC 1449
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1375 TTGGAGTTCTTCTCCAATGAGGTTAGTGGCATAGTCTATACCGGTTTTGTGACTGTGTTC 1434
Query 1450 ACAGCTTCTTATGGTGCATTCATCCTCTACCTCATTGCTCGTGGCATCACTTTCACTCCT 1509
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1435 ACAGCTTCGTATGGTGCATTCATCCTCTACCTCATTGCTCGTGGCATCACTTTCACTCAT 1494
Query 1510 TGGCCG-TTCAAAGCGGAGTCTAGTCATTGA 1539
|||| | |||||||||||||||||| |||||
Sbjct 1495 TGGC-GATTCAAAGCGGAGTCTAGTAATTGA 1524
> Ahg496866 jgi|Araly1|496866|fgenesh2_kg.8__2682__AT5G67330.1
Length=1793
Score = 736 bits (398), Expect = 0.0
Identities = 1002/1284 (78%), Gaps = 80/1284 (6%)
Strand=Plus/Plus
Query 160 TTCTCATGGAAGAAGCTATGGTTATTCACCGGACCTGGGTTTTTAATGAGCATTGCGTTT 219
||||||||||||||||| ||| |||||||||||||||||||| | ||||| || || |||
Sbjct 201 TTCTCATGGAAGAAGCTTTGGCTATTCACCGGACCTGGGTTTCTGATGAGTATCGC-TTT 259
Query 220 -TTAGATCCAGGGAATCTCGAAGGAGATCTTCAAGCCGGTGCGGTTGCTGGGTACTCTTT 278
| |||||||| |||||||| || ||||||||||| || || | ||||| ||||||||
Sbjct 260 CATCGATCCAGGTAATCTCGAGGGCGATCTTCAAGCTGGAGCCATCGCTGGCTACTCTTT 319
Query 279 G-TTATGGCTTC-TCATGTGGGCAACAGCAATGGGTCTTTTGGTTCAGCTTTTGTCGGCT 336
| || |||| || | |||||||| || || || || |||||| | || ||| | || |||
Sbjct 320 GATT-TGGC-TCTTGATGTGGGCTACTGCGATTGGCCTTTTGATCCAACTTCTCTCTGCT 377
Query 337 AGGCTTGGTGTTGCGACAGGTCGTCACT-TAGCTGAGCTT-TGTCGTGATGAGTATCCTA 394
| || ||||| ||||| ||||| || | | || ||| || |||||||| |||||||| |
Sbjct 378 CGTCTCGGTGTCGCGACTGGTCGGCA-TCTGGCGGAG-TTGTGTCGTGAAGAGTATCCGA 435
Query 395 CTTGGGCAAGAATGGT-TTTGTGGGTTATGGCTGA-ATTGGCTTTGATTGGATCTGATAT 452
|||||||||| ||||| || ||| ||||||| || ||| |||||||| ||| |||||||
Sbjct 436 CTTGGGCAAGGATGGTGCTT-TGGATTATGGCGGAGATT-GCTTTGATCGGAGCTGATAT 493
Query 453 TCAAGAAGTTATTGGTAGTGCTATTGCTATCAAGATTTTGAGTAATGGGATT--TTGCCT 510
|||||||||||||||||||||||| ||||||||||| ||| |||||| ||| || |||
Sbjct 494 TCAAGAAGTTATTGGTAGTGCTATAGCTATCAAGATCTTGTCTAATGG-ATTGGTT-CCT 551
Query 511 CTTTGGGCTGGTGTTGTTATTACTGCTCTTGATTGTTTCGTCTT-CTTGTTTCTTG-AGA 568
|||||||||||||||||||| |||||||||||||||||| |||| || ||| ||| |||
Sbjct 552 CTTTGGGCTGGTGTTGTTATCACTGCTCTTGATTGTTTCATCTTTCTA-TTT-TTGGAGA 609
Query 569 ACTACGGAATAAGGAAGCTCGAGGCTGTGTTTGC-AGTTCTT-ATCGCTACAATGGGAGT 626
| || ||||||||||| || || ||||||||||| | || || || || ||||||| |
Sbjct 610 ATTATGGAATAAGGAAACTAGAAGCTGTGTTTGCTA-TT-TTGATTGCAACAATGGC--T 665
Query 627 CT--CATTCGCTTGGATGTTTGGTCA-AGCTAAGCCAAGTGGCTCTGAGCTTCTCATTGG 683
|| |||| ||||||||||||||||| | |||| || ||||| | || || || ||||
Sbjct 666 CTTGCATTTGCTTGGATGTTTGGTCAGA-CTAAACCCAGTGGAACCGAACTCCTTGTTGG 724
Query 684 -G-ATTTTGGTACCGAAACTGAGTTCAAGAACGATACAGA-AAGCAGTTGGAGTTGTGGG 740
| ||| ||| || || || ||||| || || || || | |||| ||||| ||||||||
Sbjct 725 AGCATT--GGTCCCTAAGCTCAGTTCGAGGACTAT-CAAACAAGCTGTTGGTGTTGTGGG 781
Query 741 TTGCATTATAATGCCACACAATGTGTTTCTT-CACTCAGCTCTTGTTCAATCTAGAGAAG 799
|| ||||| ||||| ||||||||||| ||| || ||||| ||||| ||||| |||||||
Sbjct 782 ATGTATTATCATGCCTCACAATGTGTT-CTTGCATTCAGCACTTGTGCAATCCAGAGAAG 840
Query 800 TCGAT---AAACGACAGAAATACCGAGTCCAAGAAGCGCTAAACTACTACACAATAGAAT 856
||||| ||| | ||| || ||| ||| ||||||| || || |||||| | || ||||
Sbjct 841 TCGATCCTAAA--A-AGAGATTCCGGGTCAAAGAAGCTCTCAAGTACTACTCCATTGAAT 897
Query 857 CCACAATTGCTCTTTTCA-TCTCCTTT-TTGATCAATC-TGTTTGTCACAACTGTTTTCG 913
| || ||||||| | | ||||| || ||||| | | ||||| || || ||||| |
Sbjct 898 CTACTGGTGCTCTTG-CGGTTTCCTTCATT-ATCAA-CGTCTTTGTGACCACGGTTTTTG 954
Query 914 CCAAAGG-GTTTTATA-ATACTGACCTCGCCAATAGCATCGGT-TTGGTTAACGCGGGAC 970
|||| | |||||| | || || | || ||| ||||||| ||| || || ||||
Sbjct 955 CCAA-GTCGTTTTACGGA-ACAGAGATAGCGGATACCATCGGTCTTGCA-AATGCTGGAC 1011
Query 971 AGTATCTT-CAGGAGAAATATGGAGGCGGTGTGTT-CCCGATACTATACATTTGGGCGAT 1028
|||| ||| ||||| ||||| || ||||| || || ||||||||| || || ||||||||
Sbjct 1012 AGTA-CTTACAGGACAAATACGGTGGCGG-GTTTTTCCCGATACTGTATATATGGGCGAT 1069
Query 1029 CGG-GCTATTAGCTGCTGGCCAAAGCAGCACTATTACCGGTACATATGCGGGACAGTTCA 1087
|| | | ||||||||||| || || || || || || ||||| || || |||||||| |
Sbjct 1070 TGGAG-TCTTAGCTGCTGGTCAGAGTAGTACCATCACAGGTACTTACGCTGGACAGTTTA 1128
Query 1088 TAATGGGCGGGTTTCTT-AATTTCAAAATGAAGAAATGG-TTGAGAGCTTTGATCACACG 1145
||||||| ||||| ||| ||| |||| |||||||||||| || ||||| || |||||| |
Sbjct 1129 TAATGGGAGGGTT-CTTGAATCTCAAGATGAAGAAATGGGTT-AGAGCCTTAATCACAAG 1186
Query 1146 AAGCTGCGCTATCATTCCAACTATTATCGTTGCGCTAGTGTTTGATTCATCGGAAGCTAC 1205
||||||||| ||||| ||||| || || |||||||| | |||||||||||||| |||
Sbjct 1187 AAGCTGCGCAATCATCCCAACAATGATTGTTGCGCTTTTCTTTGATTCATCGGATTCTAT 1246
Query 1206 ACTCGATGT-CTTAAACGAGTGGCTTAACGTGCTTCAGTCCA-TTCAAATCCCCTTT-GC 1262
||||| | || || ||| ||||| || || ||||| || | |||| ||||| ||| ||
Sbjct 1247 GCTCGACGAGCTCAA-CGAATGGCTAAATGTTCTTCAATC-AGTTCAGATCCC-TTTCGC 1303
Query 1263 AC-TCATTCCCT-TACTTTGTTTGGTCTCCAAGGAACAAATCATGGGTAGCTTCAAGATT 1320
| |||| |||| | || || ||||||||||| || ||||||||||| || ||||| ||
Sbjct 1304 -CGTCAT-CCCTCTGCTCTGCTTGGTCTCCAATGACCAAATCATGGGCAGTTTCAAAATA 1361
Query 1321 GGTCCTTT-GTACAAGACAATCGCGTGGCTTGTTGCTGCGCTCGTGATAATGATCAACGG 1379
|| || || || ||||||| | ||| |||| ||||| || |||||| || || ||
Sbjct 1362 CAACCATTAGTCCA-GACAATCTCATGGATTGTAGCTGCCCTTGTGATAGCCATTAATGG 1420
Query 1380 TTATCTTTTGTTGGAGTTCTTCTC 1403
||||| || |||| ||||||||
Sbjct 1421 GTATCTAATGGTGGACTTCTTCTC 1444
> Ahg923008 jgi|Araly1|923008|scaffold_104289.1
Length=1640
Score = 678 bits (367), Expect = 0.0
Identities = 988/1282 (77%), Gaps = 66/1282 (5%)
Strand=Plus/Plus
Query 152 CACCACCGTTCTCATGGAAGAAGCTATGGTTATTCACCGGACCTGGGTTT-TTAATGAGC 210
|||| || ||||| ||| ||| ||||||||||||||||| || ||||| ||||||||
Sbjct 205 CACCGCCATTCTCGTGGCGGAAACTATGGTTATTCACCGGTCC-AGGTTTCTTAATGAGT 263
Query 211 ATTGCGTTTTTAGATCCAGGGAATCTCGAAGGAGATCTTCAAGCCGGTGCGGTTGCTGGG 270
|| |||||||| |||||||||||| | ||||||||||| ||||| ||||| | |||||
Sbjct 264 ATAGCGTTTTTGGATCCAGGGAATTTAGAAGGAGATCTACAAGCTGGTGCAATCGCTGGC 323
Query 271 TACTCTTTGTTATGGCT-TCTCATGTGGGCAACAGCAATGGGTCTT-TTGGTTCAGCTTT 328
|| ||| |||||||||| | | |||||||||||||| ||||| || ||| ||||| | |
Sbjct 324 TATTCTCTGTTATGGCTAT-TGATGTGGGCAACAGCTATGGG-ATTGTTGATTCAGATGT 381
Query 329 TGTCGGCTAG-GCTTGGTGTTGCGACAGGTCGTCACTTAGCTGAGCTTTGTCGTGATGAG 387
| || ||||| | |||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 382 TATCAGCTAGAG-TTGGTGTTGCTACTGGTCGTCATTTAGCTGAGCTTTGTCGTGATGAG 440
Query 388 TATCCTACTTGGGCAAGA-ATG-GTTTTGTGGGTTATGGCTGAA-TTGGCTTTGATTGGA 444
||||| |||||||| || ||| | |||| | | ||||| ||| ||| ||||||||||
Sbjct 441 TATCCGACTTGGGCTAGGTATGTGCTTTG-GTCT-ATGGCGGAACTTG-CTTTGATTGG- 496
Query 445 T-CTGATATTCAAGAAGTTATTGGTAGTGCTATTGCTAT-CAAGATT-TTGAGTAATGG- 500
| ||||||||||||| ||||||||||||||||||||||| || |||| || || |||
Sbjct 497 TGCTGATATTCAAGAGGTTATTGGTAGTGCTATTGCTATTCA-GATTCTT-AGCCGTGGT 554
Query 501 GATTTTGCCTCTTTGGGCTGGTGTTGTTATTACTGCTCTTG-ATTGTTTCGTCTTCTTGT 559
| | ||||||||||||||||||||||||||||| ||| | | ||||||| | || ||||
Sbjct 555 G-TCTTGCCTCTTTGGGCTGGTGTTGTTATTACGGCT-TCGGATTGTTTTTTATTTTTGT 612
Query 560 TTCTTGAGAACTACGGAATAAGGAAGCTCGAGGCTGTGTTTGCAGTTCTT-ATCGCTACA 618
|||| ||||| ||||| | |||||| | || ||||| ||||||||| || ||||| ||
Sbjct 613 TTCTAGAGAATTACGGTGTGAGGAAGTTAGAAGCTGTTTTTGCAGTT-TTGATCGCAACT 671
Query 619 ATGGGAGTCTCATTCGCTTGGATGTTTGGTCAAGCTAAGCCAAGTGGCTCTGAGCTTCTC 678
||||| | || || ||||||||||||||| || | ||||| ||||| || ||| |
Sbjct 672 ATGGGTTTGTCCTTTGCTTGGATGTTTGGTGAAACCAAGCCGAGTGGGAAAGAACTTATG 731
Query 679 ATTGGGATTTTGGTACCGAAACTGAGTTC-AAGAACGATACAGA-AAGCAGTTGGAGTTG 736
|| || ||||| |||||| || || || |||| | || ||| ||||||| || ||||
Sbjct 732 ATAGGTATTTTACTACCGAGGCTTAGCTCGAAGA-CAATT-AGACAAGCAGTAGGTGTTG 789
Query 737 TGGGTTGCATTATAATGCCACACAATGTGTTTCTT-CACTCAGCTCTTGTTCAATCTAG- 794
| || || | |||||||| |||||||||||| || || || |||||||| ||||| ||
Sbjct 790 TTGGCTGTGTCATAATGCCTCACAATGTGTTT-TTGCATTCGGCTCTTGTACAATCGAGG 848
Query 795 AGAAGTCGAT--AAACGACAGAAATACCGAGTCCAAGAAGCGCTAAACTACTACACAATA 852
| || ||||| ||| || ||||| ||| || ||||| ||||| || ||||| ||
Sbjct 849 AAAA-TCGATCCAAA-GAG-GAAATCCCGGGTTCAAGAGGCGCTTAATTACTATTTGATC 905
Query 853 GAATCCA-CAATTGCTCTTTTCATCTCCTTTTTGATCAATCTGTTTGTCACAACTGT-TT 910
|| || | | | || |||||||||||||| |||| || |||||||| || ||||| ||
Sbjct 906 GAGTC-ATCCGTAGCCCTTTTCATCTCCTTCATGATTAACCTGTTTGTGACTACTGTCTT 964
Query 911 TCGCCAAAGGG-TTTTATA-ATACTGACCTCGCCAATAGCATCGGTTTGGTTAACGCGGG 968
| || |||||| |||||| | ||||| || |||| ||| || | ||||| || ||
Sbjct 965 T-GC-AAAGGGATTTTATGGA-ACTGAGAAAGCTAATAACATTGGCCTAGTTAATGCTGG 1021
Query 969 ACAGTATCTTCAGGAGAAA-TATGGAGGCGGTG-TG-TTCCCGATACTATACATTTGGGC 1025
||||||||||| || ||| | |||||| || | | |||| ||| || || || ||||
Sbjct 1022 TCAGTATCTTCAAGA-AAAGTTTGGAGGTGG-GCTTCTTCC-GATTCTTTATATATGGG- 1077
Query 1026 GA-TCGGGCTATTAGCTGCTGGCCAAAGCAGCACTATTACCGGTACATATGCGGGACAGT 1084
|| ||||| | ||||| || || || ||||| || || || ||||||||||| |||||||
Sbjct 1078 GAATCGGGTTGTTAGCAGCCGGACAGAGCAGTACAATAACTGGTACATATGCTGGACAGT 1137
Query 1085 TCATAATGGGCGGGTTTCTTAATTTCAAAATGAAGAAATGGTTGAGAGCTTTGATCACAC 1144
| ||||||||||| ||||| || || | ||||||||| |||| || | || |||
Sbjct 1138 TTATAATGGGCGGTTTTCTGAACCTCCGGCTTAAGAAATGGATGAGGGCAGTAATAACAA 1197
Query 1145 GAAGCTGCGCTATCATTCCAACTATTATCGTTGCGCTAGTGTTTGATTCATCGGAAGCTA 1204
||||||| ||||| | ||||| || || || || | ||||| || | || ||||||
Sbjct 1198 GAAGCTGTGCTATTGTGCCAACCATGATTGTGGCAATCGTGTTCAATACTTCTGAAGCTT 1257
Query 1205 CACTCG-ATGTCTTAAACGAGTGGCTTAACGTGCTTCAGTCCATTCAAATCCCCTTTGCA 1263
| || | |||| || || || ||||| || ||||||||||| | ||||| || |||||
Sbjct 1258 C-CTTGGATGTTTTGAATGAATGGCTCAATGTGCTTCAGTCTGTACAAATTCCTTTTGCT 1316
Query 1264 CT-CATTCC-CTTACTTTGTTTGGTCTCCAAGGAACAAATCATGGGTAG-CTTCAAGATT 1320
|| | | || ||| || ||||| || || ||| |||| ||||| || ||||||||||
Sbjct 1317 CTTC-TGCCTCTT-CTAACCTTGGTATCTAAAGAAGAAATTATGGG-AGACTTCAAGATT 1373
Query 1321 GGTCCT-TTGTACAAGACAATCGCGTGG-CTTGTTGCTGCGCTCGTGATAATGATCAACG 1378
||||| || | || || ||| || ||| || || ||||| || || || || |||||||
Sbjct 1374 GGTCCCATTCTCCA-GAGAATAGCTTGGACT-GTGGCTGCACTTGTAATGATCATCAACG 1431
Query 1379 GTTATCTTTTGTTGGAGTTCTT 1400
| |||||| ||||||| |||||
Sbjct 1432 GGTATCTTCTGTTGGATTTCTT 1453
> Ahg905989 jgi|Araly1|905989|Al_scaffold_0003_3117
Length=294
Score = 171 bits (92), Expect = 2e-41
Identities = 116/128 (91%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 339 GCTTGGTGTTGCGACAGGTCGTCACTTAGCTGAGCTTTGTCGTGATGAGTATCCTACTTG 398
||||||||||||||| |||| | ||||||||||||||||| |||||| |||||| |||||
Sbjct 117 GCTTGGTGTTGCGACGGGTCTTGACTTAGCTGAGCTTTGTTGTGATGGGTATCCGACTTG 176
Query 399 GGCAAGAATGGTTTTGTGGGTTATGGCTGAATTGGCTTTGATTGGATCTGATATTCAAGA 458
||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 177 GGCGAGAATGGTTTTGTGGGTTATGGCTGAATTTTTTTTGATTGGGTCTGATATTCAAGA 236
Query 459 AGTTATTG 466
| ||||||
Sbjct 237 ACTTATTG 244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66391297035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5