BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G23171.1

Length=174
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg481189 jgi|Araly1|481189|fgenesh2_kg.4__249__AT2G23171.1          244    1e-64


> Ahg481189 jgi|Araly1|481189|fgenesh2_kg.4__249__AT2G23171.1
Length=213

 Score =  244 bits (132),  Expect = 1e-64
 Identities = 160/174 (92%), Gaps = 0/174 (0%)
 Strand=Plus/Plus

Query  1    ATGACAATAAATTGCCCAATCAAAGTAACATGCCAACGTGGCGCAGACATATCAGTCCCA  60
            |||||||||||||||| ||||| || |||||||||||||||| ||||||||| |||||||
Sbjct  11   ATGACAATAAATTGCCTAATCACAGCAACATGCCAACGTGGCTCAGACATATGAGTCCCA  70

Query  61   CATGTCTGCCCAAAACTAGCCAAAGATTACGTGACCGCGGTCCCTCTTGTCCCCTGTCTC  120
            | |||||||||||||||||||||||||||||||  |  |||||||| |||||||||||||
Sbjct  71   CTTGTCTGCCCAAAACTAGCCAAAGATTACGTGTTCATGGTCCCTCATGTCCCCTGTCTC  130

Query  121  GGTCTAACGATAACAAACCGAGCCCACTTTTATGTCGACGTGGAATTTGGCTGA  174
            |||||||| ||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct  131  GGTCTAACCATAACAAACCGAGCCCACTTTTATGTCCACGTGGAATTTCGCTGA  184



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 5766427411


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5