BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23180.1
Length=1688
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481190 jgi|Araly1|481190|fgenesh2_kg.4__250__AT2G23180.1 2410 0.0
Ahg943924 jgi|Araly1|943924|scaffold_700153.1 1369 0.0
Ahg943925 jgi|Araly1|943925|scaffold_700154.1 1315 0.0
> Ahg481190 jgi|Araly1|481190|fgenesh2_kg.4__250__AT2G23180.1
Length=1648
Score = 2410 bits (1305), Expect = 0.0
Identities = 1515/1612 (94%), Gaps = 32/1612 (2%)
Strand=Plus/Plus
Query 10 AAAAGAAGAAGAAGAAATACTTTCTCAATTTTCTCTAATGGCTCTGATAACCTTACTTGA 69
|||| |||||||||||| |||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1 AAAAAAAGAAGAAGAAACACTTTCTCAATTCTCTCTAATGGCTCTAATAACCTTACTTGA 60
Query 70 AGTCTCAATTTCTTTACTCTTTT-TCTCCTTCCTTTACGGATATTTCTTGATTAGCAAGA 128
|||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||
Sbjct 61 AGTCTCAATTTCTTTACT-TTTTATCTCCTTCCTTTACGGATATTGCTTGATTAGCAAGA 119
Query 129 AACCTCACCGTTCGTTTCTCACCAACTGGCCATTTCTCGGTATGCTTCCGGGTTTACTCG 188
||||||| |||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 120 AACCTCATCGTTCGTTTCTCACTAACTGGCCGTTCCTCGGTATGCTTCCGGGTTTACTCG 179
Query 189 TGGAGATCCCTCGTGTTTACGACTTTGTAACCGAGCTTCTCGAGGCCTCAAACTTAACTT 248
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 180 TGGAGATCCCTCGTGTTTATGACTATGTAACCGAGCTTCTCGAGGCCTCAAACTTAACTT 239
Query 249 ATCCTTTCAAAGGTCCGTGTTTTGGGGGCCTTGACATGTTGATCACCGTTGATCCGGCTA 308
|||||||||||||||||| ||| ||||| || ||||||||||||||||||||||||||||
Sbjct 240 ATCCTTTCAAAGGTCCGTATTTCGGGGGTCTCGACATGTTGATCACCGTTGATCCGGCTA 299
Query 309 ATATCCATCACATCATGAGCTCAAACTTCGCGAATTACCCGAAAGGAACCGAGTTCAAGA 368
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 300 ATATCCACCACATCATGAGCTCAAACTTCGCGAATTACCCGAAAGGATCCGAGTTCAAGA 359
Query 369 AGATATTCGATGTTTTGGGAGATGGGATTTTCAACGCGGATTCGGAGTTATGGAAAGATC 428
||||||||||||||||||||||||| |||||||| || ||||| ||||||||||||||||
Sbjct 360 AGATATTCGATGTTTTGGGAGATGGCATTTTCAATGCAGATTCTGAGTTATGGAAAGATC 419
Query 429 TGAGGAAATCAGCTCAAAGCATGATGACTCATCAAGATTTTCAAAGGTTTACACTAAGAA 488
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TAAGGAAATCAGCTCAAAGCATGATGACTCATCAAGATTTTCAAAGGTTTACACTAAGAA 479
Query 489 CAATCATGAGTAAGCTAGAGAAAGGGCTTGTCCCACTTCTTGATTACGTTGCTGAAAAGA 548
||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 480 CAAGCATGAGTAAGCTAGAGAAAGGGCTCGTCCCACTTCTTGATTACGTTGCTGAGAAGA 539
Query 549 AACA-AGTCGTTGACTTACAAGATGTGTTCCAAAGATTTACGTTCGACACTTCGTTTGTT 607
|| | ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 540 AA-ATAGTCGCTGACTTACAAGATGTGTTCCAAAGATTTACGTTCGACACTTCGTTTATT 598
Query 608 TTAGCGACCGGGGTTGACCCGGGTTGTCTCT-CGACTGAAATGCCGCAAATCGAGTTTGC 666
||||||||||||||||| || |||||||| | ||||||||||||||||||||||||||||
Sbjct 599 TTAGCGACCGGGGTTGATCCAGGTTGTCT-TGCGACTGAAATGCCGCAAATCGAGTTTGC 657
Query 667 TAGAGCTTTAGACGAAGCAGAGGAAGCAATTTTCTTCAGGCATGTGAAGCCAGAGATTGT 726
||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| ||
Sbjct 658 TAGAGCTTTAGACGAAGCAGAGGCAGCAATTTTCTTCAGGCATGTCAAGCCGGAGATGGT 717
Query 727 TTGGAAGATGCAGAGG-TTTATTGGGTTTGGAGATGAGTTGAAAATGAAGAAA-GCTCAC 784
|||||||||||| ||| |||||||||||||||||||||||||| |||| |||| ||||||
Sbjct 718 TTGGAAGATGCA-AGGATTTATTGGGTTTGGAGATGAGTTGAAGATGA-GAAAAGCTCAC 775
Query 785 TCGACATTCGACCGAGTTTGCTCTAAATGCATAGCTTCTAAGAGAGATGAAATAACCAAT 844
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 776 TCGATTTTCGACCGAGTTTGCTCTAAATGCATAGCTTCTAAGAGAGATGAAATAACTAAT 835
Query 845 GGGGTTATAAACATTGACTCTTCTTCTAAAGATTTGTTGATGTGCT-ACATGAATGTGGA 903
|||||||| ||||| |||||||||||||||||||||||||||| || |||||| ||||||
Sbjct 836 GGGGTTATTAACATCGACTCTTCTTCTAAAGATTTGTTGATGT-CTTACATGAGTGTGGA 894
Query 904 TACAATTTGTCATACAACCAAGTACAAGTTGTTGAATCCAAGTGATGACAAATTCCTTAG 963
||| | | | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 895 TAC-----G--A--C--C-AAGTACAAGTTGTTGAATCCAAGTGATGACAAATTCCTTAG 942
Query 964 AGACATGATCTTAAGCTTCATGTTAGCTGGTAGAGACACCACAAGCTCTGCTCTCACTTG 1023
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 943 AGACATGATCTTAAGCTTCATGATAGCTGGTAGAGACACCACAGGCTCTGCTCTCACTTG 1002
Query 1024 GTTCTTTTGGCTTCTCTCTAAGAACCCAAAAGCCATAACCAAGATTCGTCAAGAAATCAA 1083
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 GTTCTTTTGGCTTCTCTCCAAGAACCCAAAAGCCATAACCAAGATTCGTCAAGAAATCAA 1062
Query 1084 CACACAACTATCTCCAAGAACCAATGATTTTGATTC--ATTCAAT--G--CTCAAGAGTT 1137
|||| ||||||| ||||||||||| ||||||||||| ||||| | | ||||||||||
Sbjct 1063 CACAAAACTATCGCCAAGAACCAACGATTTTGATTCTGATTCATTCAGTTCTCAAGAGTT 1122
Query 1138 AAACAAGTTGGTGTATGTACATGGAGCATTGTGTGAAGCCCTTAGGCTATATCCACCGGT 1197
|||||||||||||||| ||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 1123 AAACAAGTTGGTGTATTTACATGGCGCATTATGTGAAGCCCTCAGGCTATATCCACCGGT 1182
Query 1198 TCCATTTCAGCACAAGTCTCCTACAAAATCC-GACGTTCTTCCAAGTGGACACAGAGTCG 1256
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1183 TCCATTTCAGCACAAGTCTCCTACAAAA-CCTGACGTTCTTCCAAGTGGACACAGAGTCG 1241
Query 1257 ATGCGAGTTCGAAGATTGTGTTCTGTCTTTACTCATTAGGGAGAATGAAATCAGTTTGGG 1316
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1242 ATGCGAGTTCGAAGATTGTGTTCTGTCTTTACTCATTGGGGAGAATGAAATCGGTTTGGG 1301
Query 1317 GAGAAGATGCATCGGAATTTAAACCGGAGAGATGGATTTCAGAGAGTGGAAGGTTGATTC 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 GAGAAGATGCATCGGAATTTAAACCGGAGAGATGGATTTCAGAGAGTGGAAGGTTGATTC 1361
Query 1377 ACGTGCCTTCTTTTAAGTTCTTATCGTTTAATGCCGGTCCAAGGACTTGTTTGGGGAAAG 1436
| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1362 ATGTGCCATCTTTTAAGTTCTTATCGTTCAATGCCGGTCCAAGGACTTGTTTGGGGAAAG 1421
Query 1437 AAGTGGCTATGACACAGATGAAGACAGTGGCTGTGAAAATTATACAAAACTATGAGATAA 1496
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1422 AAGTGGCCATGACACAGTTGAAGACAGTGGCTGTGAAAATTATACAAAACTATGAGATAA 1481
Query 1497 AGGTCGTTGAAGGACACAAGATCGAGCCAGTTCCTTCTATTATTCTTCACATGAAGCATG 1556
|| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1482 AGATCGTTGATGGACACAAGATCGAGCCAGTTCCTTCTATTATCCTTCACATGAAGCATG 1541
Query 1557 GTCTTAAAGTTACAGTCACTAAGAGATCTAATTTGCTCTGAATATTATGCAT 1608
| ||||||||||||||||||||||||| |||| || ||||||||||||||||
Sbjct 1542 GGCTTAAAGTTACAGTCACTAAGAGATGTAATATGGTCTGAATATTATGCAT 1593
> Ahg943924 jgi|Araly1|943924|scaffold_700153.1
Length=1589
Score = 1369 bits (741), Expect = 0.0
Identities = 1320/1589 (83%), Gaps = 81/1589 (5%)
Strand=Plus/Plus
Query 36 AATTT-TCTCTAATGGCTCTGATAACCTTACTTGAAGTCTCAATTTCTTTACTCTTT-TT 93
||||| || ||||||||| || | | |||||| ||| |||| ||| |||| || ||| ||
Sbjct 10 AATTTCTCCCTAATGGCTTTGGTCAGCTTACTCGAAATCTCCATTGCTTT-CT-TTTGTT 67
Query 94 CTCCTT-CCTTTACGGATATTTCTTGATTAGCAAGAAACCTCACCGTTCGTTTCTCACCA 152
||||| |||| | || |||| |||| ||||||||||| |||||||| |||||||| |
Sbjct 68 -TCCTTATCTTT-CAAAT-TTTCCTGATCAGCAAGAAACCGCACCGTTCATTTCTCACAA 124
Query 153 ACTGGCCATTTCTCGGTATGCTTCCGGGTTTAC-TCGTGGAGATCCCTCGTGTTTACGAC 211
||||||| | |||||||||||||||||||||| || || |||||||||| || |||
Sbjct 125 ACTGGCCGCTCCTCGGTATGCTTCCGGGTTTACTTC-CCCAGCTCCCTCGTGTCTATGAC 183
Query 212 TTTGTAACCGAGCTTCTCGAGGCCTCAAACTT-AACTTATCCTTTCAAAGGTCCGTGTTT 270
||| |||| ||| |||| |||| | ||||| ||| |||| ||||||||| || | |||
Sbjct 184 TTTATAACTGAGGTTCTTGAGGACGGGAACTTAAAC-TATCTTTTCAAAGGACC-TTTTT 241
Query 271 T-GGGGGCCTTGACATGTTGATCACCGTTGATCCGGCTAATATCCATCACATCATGAGCT 329
| |||||| | ||||||||| ||||||||||||| ||||||||||| |||||||||||||
Sbjct 242 TGGGGGGCATCGACATGTTGTTCACCGTTGATCCTGCTAATATCCACCACATCATGAGCT 301
Query 330 CAAACTTCGCGAATTACCCGAAAGGAACCGAGTTCAAGAAGATATTCGATGTTTTGGGAG 389
||||||| ||||||||||||||||||||||| ||||||||| |||| || ||||||||||
Sbjct 302 CAAACTTTGCGAATTACCCGAAAGGAACCGAATTCAAGAAGTTATTTGACGTTTTGGGAG 361
Query 390 ATGGGATTTTCAACGCGGATTCGGAGTTATGGAAAGATCTGAGGAAATCAGCTCAAAGCA 449
||||||||||||||| |||||| ||||| ||||| ||||| |||||||| |||||||||
Sbjct 362 ATGGGATTTTCAACGTGGATTCAGAGTTGTGGAAGGATCTAAGGAAATCTTCTCAAAGCA 421
Query 450 TGATGACTCATCAAGATTTTCAAAGGTTTACACTAAG-AACAATCATGAGTAAGCTAGAG 508
|||||| | ||| ||||||||||||||| || | || |||| | ||||||||||||||
Sbjct 422 TGATGAATGATCCCGATTTTCAAAGGTTTTCA-TTAGCTACAAGCTTGAGTAAGCTAGAG 480
Query 509 AAAGGGCTTGTCCCACTTCTTGATTACGTTGCTGAAA-AGAAACAAGTCGTTGACTTACA 567
||||||||||| |||||||||||| | | |||| ||| |||||| ||||| ||||||||
Sbjct 481 AAAGGGCTTGTTCCACTTCTTGATCATGCTGCT-AAAGAGAAACTCGTCGTGGACTTACA 539
Query 568 AGATGTGTTCCAAAGATTTACGTTCGACACTTCGTTTGTTTTAGCGACCGGGGT-TGACC 626
|||||| ||||||||||| ||||| |||||| ||||||||||||| ||| || | ||| |
Sbjct 540 AGATGTTTTCCAAAGATTCACGTTTGACACTACGTTTGTTTTAGCAACC-GGATATGATC 598
Query 627 CGGGTTGTCTCTC-GACTGAAATGCCGCAAATCGAGTTTGCTAGAGCTTTAGACGAAGCA 685
| ||||||||||| | | ||||||||| ||||||||||||| |||||||||||||| |||
Sbjct 599 CAGGTTGTCTCTCGGTC-GAAATGCCGGAAATCGAGTTTGCAAGAGCTTTAGACGATGCA 657
Query 686 GAGGAAGCAATTTTCTTCAGGCATGTGAAGCCAGAGATTGTTTGGAAGATGCAGAGGTTT 745
|||||||| ||||||| ||| ||||| ||||| ||||| || ||||||||||| || |
Sbjct 658 GAGGAAGCCATTTTCTACAGACATGTCAAGCCGGAGATGGTGTGGAAGATGCAAAGATGG 717
Query 746 ATTGGGTTTGGAGATGAGTTGAAAATGAAGAA-AGCTCACTCGACATTCGACCGAGTTTG 804
|||||| |||||||||||||||| |||| || ||||||| || ||| | || |||||
Sbjct 718 ATTGGGGTTGGAGATGAGTTGAAGCTGAA-AAGAGCTCACGCGGTTTTCAATCGTGTTTG 776
Query 805 CTCTAAATGCATAGCTTCTAAGAGAGATGAAAT-AACCAATGGGGTTATAAAC-ATTGAC 862
|||| | ||||||||||||||||||||||| || |||| | |||| || || |
Sbjct 777 CTCTGAGTGCATAGCTTCTAAGAGAGATGAGATCAACCGA-GGGG------ACGGTT--C 827
Query 863 -TCTTCTTCTAAAGATTTGTTGATGTGCTACATGAATGTGGATACAAT-TTGTCATACAA 920
||||||||||| ||||||||||||| || | | | || ||| ||| | || |
Sbjct 828 TTCTTCTTCTAATGATTTGTTGATGT-CT---T--CT-T---TA-AATGTTG--ACACGA 874
Query 921 CCAAGTACAAGTTGTTGAATCCAAGTGATGACAAATTCCTTAGAGACATGATCTTAAGCT 980
| ||||||||||||||||||||||||||||||| |||||||||||||| ||| | ||
Sbjct 875 CTAAGTACAAGTTGTTGAATCCAAGTGATGACAGATTCCTTAGAGACACAATCCTGTCCT 934
Query 981 TCATGTTAGCTGGTAGAGACACCACAAGCTCTGCTCTCACTTGGTTCTTTTGGCTTCTCT 1040
||||||||||||| |||||||| ||| |||| || |||||||||||||| |||||||| |
Sbjct 935 TCATGTTAGCTGGCAGAGACACGACAGGCTCAGCGCTCACTTGGTTCTTCTGGCTTCTAT 994
Query 1041 -CTAAGAACCCAA-AAGCCATAACCAAGATTCGTCAAGAAATCAACACACAA-CTATCTC 1097
| || || |||| ||||||| |||||||||||||||||||||||||| || |||| ||
Sbjct 995 GC-AA-AAACCAAGAAGCCATGGCCAAGATTCGTCAAGAAATCAACACA-AATCTATTTC 1051
Query 1098 CAAG-AAC---CA--A------TG------AT--TT-TGATTCATTCAATGCTCAAGAGT 1136
|||| ||| | | || || || ||||||||||||| | |||| |
Sbjct 1052 CAAGAAACAAGAATGACGGTTCTGTTTCTTATGATTCTGATTCATTCAATCCCCAAGGGA 1111
Query 1137 TAAACAAGTTGGTGTATGTACATGGAGC-ATTGTGTGAAGCCCTTAGGCTATATCCACCG 1195
|||| |||||||||||| |||| || || ||| ||||||||||| ||||| ||||||||
Sbjct 1112 TAAAGAAGTTGGTGTATTTACACGGCGCAATT-TGTGAAGCCCTCAGGCTCTATCCACCT 1170
Query 1196 GTTCCATTTCAGCACAAGTCTCCTACAAAATCCGACGTTCTTCCAAGTGGACACAGAGTC 1255
||||| ||| | |||||||||||||| ||| ||||||| |||||||| || |||| ||||
Sbjct 1171 GTTCCCTTTAACCACAAGTCTCCTACTAAACCCGACGTCCTTCCAAGCGGCCACAAAGTC 1230
Query 1256 GATGCGAGTTCGAAGAT-TGTGTTCTGTCTTTACTCATTAGGGAGAATGAAATCAGTTTG 1314
| || | |||||| || | |||||||||||||||||||||||||||||||||| |||||
Sbjct 1231 AAAGCCAATTCGAAAATAT-TGTTCTGTCTTTACTCATTAGGGAGAATGAAATCGGTTTG 1289
Query 1315 GGGAGAAGATGCATCGGAATTTAAACCGGAGAGATGGATTTCAGAGAGTGGAAGGTTGAT 1374
|||||||||||||| |||||| |||||||||||||||||||| ||||||||||| | | |
Sbjct 1290 GGGAGAAGATGCATTGGAATTCAAACCGGAGAGATGGATTTCTGAGAGTGGAAGATCGGT 1349
Query 1375 TCACGTGCCTTCTTTTAAGTTCTTATCGTTTAATGCCGGTCCAAGGACTTGTTTGGGGAA 1434
|||| ||| |||| |||||||||||| ||||| || |||||||| ||||||||||||||
Sbjct 1350 ACACGAGCCATCTTATAAGTTCTTATCATTTAACGCAGGTCCAAGAACTTGTTTGGGGAA 1409
Query 1435 AGAAGTGGCTATGACACAGATGAAGACAGTGGCTGTGAAAATTATACAAAACTATGAGAT 1494
|||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1410 AGAAGTGGCTATGATGCAAATGAAGACAGTGGCTGTGAAAATCATACAAAACTATGAGAT 1469
Query 1495 AAAGGTCGTTGAAGGACACAAGATCGAGCCAGTTCCTTCTATTATTCTTCACATGAAGCA 1554
|| ||||||||||| ||||||||| |||||| |||||| |||| || |||||||||||
Sbjct 1470 TAATGTCGTTGAAGGGCACAAGATCAAGCCAGCTCCTTCGGTTATCCTCCACATGAAGCA 1529
Query 1555 TGGTCTTAAAGTTACAGTCACTAAGAGAT 1583
|||||||||||| |||||| |||| ||||
Sbjct 1530 TGGTCTTAAAGTCACAGTCTCTAAAAGAT 1558
> Ahg943925 jgi|Araly1|943925|scaffold_700154.1
Length=1601
Score = 1315 bits (712), Expect = 0.0
Identities = 1315/1594 (82%), Gaps = 90/1594 (6%)
Strand=Plus/Plus
Query 41 TCTCTAATGGCTCTGATAACCTTACTTGAAGTCTCAATTTCTTTAC-TCT-TTTTCTCCT 98
|||||||||||| |||||| ||| ||||| |||| ||| |||| | | | ||||||||
Sbjct 16 TCTCTAATGGCTTTGATAAGCTTGTTTGAAATCTCCATTGCTTT-CTTTTGTTTTCTCC- 73
Query 99 TCCTTTACGGATATTTCTTGATTAGCAAGAAACCTCACCGTTC-GTTTCTCACCAACTGG 157
| | || | ||||||||||||| | ||||||||||||||| || || | ||| ||||||
Sbjct 74 T-C-TT-CCGATATTTCTTGATCAACAAGAAACCTCACCG-TCTGTGCCCCACAAACTGG 129
Query 158 CCATTTCTCGGTATGCTTCCGGGTTTACTCGTGGAGATCCCTCGTGTTTACGACTTTGTA 217
||||| || |||||| |||||||||| ||||| ||||||| |||||||||||||||| ||
Sbjct 130 CCATTCCTTGGTATGATTCCGGGTTTGCTCGTCGAGATCCATCGTGTTTACGACTTTATA 189
Query 218 ACCGAGCTTCTCGAGGCCTCAAACT-TAACTTATCCTTTCAAAGGTCCGTGTTTTGGGGG 276
|||||| ||||||||| | |||| | |||| ||||||| || ||| |||||||| |
Sbjct 190 ACCGAGATTCTCGAGGTCACAAA-TCTAACCTATCCTTGCATAGGCCCGTGTTTCGCAAA 248
Query 277 CCTTGACATGTTGATCACCGTTGATCCGGCTAATATCCATCACATCATGAGCTCAAACTT 336
||| |||||| || |||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 249 CCTCGACATGCTGGTCACGGTTGATCCTGCTAATATCCACCACATCATGAGCTCAAACTT 308
Query 337 CGCGAATTACCCGAAAGGAACCGAGTTCAAGAAGATATTCGATGTTTTGGGAGATGGGAT 396
|||||| |||||||||||| |||| ||||||||| ||||||| |||||||||| |||||
Sbjct 309 CGCGAACTACCCGAAAGGACCCGAATTCAAGAAGTTATTCGACATTTTGGGAGACGGGAT 368
Query 397 TTTCAACGCGGATTCGGAGTTATGGAAAGATCTGAGGAAATCAGCTCAAAGCATGATGAC 456
|||||| || |||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 369 TTTCAATGCAGATTCGGAATTGTGGAAAGATCTGAGGAAATCAGCTCAAAGCATGATGA- 427
Query 457 TCA-TCAAGATTTTCAAAGGTTTACACTAAGA-ACAA--TCATGAGTAAGCTAGAGAAAG 512
| | || || ||||||| |||| || || | |||| ||| | ||||||||||||||
Sbjct 428 TGAATCCCGAGTTTCAAAAGTTTTCATTA-GCTACAAGCTCAA-A-TAAGCTAGAGAAAG 484
Query 513 GGCTTGTCCCACTTCTTGATTACGTTGCTGAAA-AGAAACAAGTCGTTGACTTACAAGAT 571
||||||||||||||||||| | |||||| ||| |||||| || || ||||| |||||
Sbjct 485 GGCTTGTCCCACTTCTTGACCATGTTGCT-AAAGAGAAACTCGTTGTGGACTTGCAAGAC 543
Query 572 GTGTTCCAAAGATTTACGTTCGACACTTCGTTTGTTTTAGCGACCGGGGT-TGACCCGGG 630
||||||||||||| ||||||||||| | |||||||||||||||||| | ||| || ||
Sbjct 544 ATGTTCCAAAGATTCACGTTCGACACCACATTTGTTTTAGCGACCGGG-TATGATCCAGG 602
Query 631 TTGTCTCTC-GACTGAAATGCCGCAAATCGAGTTTGCTAGAGCTTTAGACGAAGCAGAGG 689
|||||||| | | ||||||||| || |||||||||| |||||||||||||| |||||||
Sbjct 603 CTGTCTCTCCGTC-GAAATGCCGGAAGTCGAGTTTGCAAGAGCTTTAGACGATGCAGAGG 661
Query 690 AAGCAATTTTCTTCAGGCATGTGAAGCCAGAGATTGTT-TGGAAGATGCAGAGGTTTA-T 747
|||| ||||||||||| ||| | || |||||||| || |||| | |||| ||| || |
Sbjct 662 AAGCTATTTTCTTCAGACATATCAAACCAGAGATC-TTGTGGAGGCTGCA-AGGCTTGCT 719
Query 748 TGGGTTTGGAGATGAGTTGAAAATGAAGAAAGCTCACTCGACATTCGACCGAGTTTGCTC 807
|||||| ||||||||| ||| |||| |||||||| | |||| || || || ||||||||
Sbjct 720 TGGGTTAGGAGATGAGAAGAAGATGACGAAAGCTCGCGCGACTTTAGATCGTGTTTGCTC 779
Query 808 TAAATGCATAGCTTCTAAGAGAGATGAAATAA-CCAATGGGGTTATA-AACATTGACTCT 865
|| | ||||||| | ||||||||||| ||| || |||| || | || |||| |||
Sbjct 780 CAAGTACATAGCTACAAAGAGAGATGAGGTAAGCCG-TGGGACTA-ACAATGTTGATTCT 837
Query 866 TC-TTCTAAAGATTTGTTGATGTGCT-ACATGAATGTGGATACAATTTGTCATACAACCA 923
| ||||||||||||| ||| || || |||||||| ||||||| | | | | |
Sbjct 838 -CATTCTAAAGATTTGCTGACGT-CTTACATGAATTTGGATAC-----G--A--C--C-A 883
Query 924 AGTACAAGTTGTTGAATCCAAGTGATGACAA-ATTCCTTAGAGACATGATCTTAAGCTTC 982
||||||||||| |||||||||||||||| || |||||| ||||||| ||||| | ||||
Sbjct 884 AGTACAAGTTGCTGAATCCAAGTGATGA-AAGATTCCTCAGAGACACAATCTTGACCTTC 942
Query 983 ATGTTAGCTGGTAGAGACACCACAAGCTCTGCTCTCACTTGGTTCTTTTGGCTTCTC-TC 1041
|||||||| ||| ||||||| ||| | |||| |||||||||||||| ||||||||| |
Sbjct 943 ATGTTAGCGGGTCGAGACACGACAGGATCTGGACTCACTTGGTTCTTCTGGCTTCTCAT- 1001
Query 1042 TAAGAACCCAAAAGCCATAACCAAGATTCGTCAAGAAATCAACACACAA-CTATCTCCAA 1100
||||| |||| ||| ||| ||||||||||||||||||| |||||| || || | || ||
Sbjct 1002 TAAGACCCCAGAAGTCATTGCCAAGATTCGTCAAGAAATAAACACA-AATCTGTTTCAAA 1060
Query 1101 GAACCAA--T----G---AT--TT-TGA---T--T--C----ATTCA---A-TGCTCAAG 1133
||| ||| | | || || ||| | | | ||||| | | | ||||
Sbjct 1061 GAAGCAAGGTTAATGCTGATGCTTCTGACAATAATGACTCTGATTCATTCAATCCCCAAG 1120
Query 1134 AGTTAAACAAGTTGGTGTATGTACATGGAGC-ATTGTGTGAAGCCCTTAGGCTATATCCA 1192
||||||| || ||||||||| |||| || || ||| ||||||||||| || || ||||||
Sbjct 1121 AGTTAAAGAAATTGGTGTATCTACACGGCGCGATT-TGTGAAGCCCTCAGACTCTATCCA 1179
Query 1193 CCGGTTCCATTTCAGCACAAGTCTCCTACAAAATCC-GACGTTCTTCCAAGTGGACACAG 1251
|| ||||| ||||| |||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1180 CCTGTTCCCTTTCAACACAAGTCTCCTACAAAA-CCAGACGTTCTTCCAAGTGGACACAA 1238
Query 1252 AGTCGATGCGAGTTCGAAGATTGTGTTCTGTCTTTACTCATTAGGGAGAATGAAATCAGT 1311
|||||| || | ||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1239 AGTCGACGCCAACTCGAAGATTTTGTTCTGTCTTTACTCATTAGGGAGAATGAAATCGGT 1298
Query 1312 TTGGGGAGAAGATGCATCGGAATTTAAACCGGAGAGATGGATTTCAGAGAGTGGAAGGTT 1371
||||||||||||||||| |||||| |||||||||||||||||||| |||||||||| ||
Sbjct 1299 TTGGGGAGAAGATGCATTGGAATTCAAACCGGAGAGATGGATTTCTGAGAGTGGAAA-TT 1357
Query 1372 -GATTCACGTGCCTTCTTTTAAGTTCTTATCGTTTAATGCCGGTCCAAGGACTTGTTTGG 1430
| | |||| ||| |||| |||||||||||||||||| || |||||||| ||||||||||
Sbjct 1358 CGGTACACGAGCCATCTTATAAGTTCTTATCGTTTAACGCTGGTCCAAGAACTTGTTTGG 1417
Query 1431 GGAAAGAAGTGGCTATGACACAGATGAAGACAGTGGCTGTGAAAATTATACAAAACTATG 1490
||||||||||||||||||| || ||||||||||||||||||||||| ||||| || ||||
Sbjct 1418 GGAAAGAAGTGGCTATGACGCAAATGAAGACAGTGGCTGTGAAAATCATACAGAATTATG 1477
Query 1491 AGATAAAGGTCGTTGAAGGACA-CAAGATCGAGCCAGTTCCTTCTATTATTCTTCACATG 1549
|||| ||| |||||||||| || ||| |||||||||| ||||||| | ||||| ||||||
Sbjct 1478 AGATGAAGATCGTTGAAGGGCAACAA-ATCGAGCCAGCTCCTTCTGTAATTCTCCACATG 1536
Query 1550 AAGCATGGTCTTAAAGTTACAGTCACTAAGAGAT 1583
||||||||||||||||| ||||| ||||||||||
Sbjct 1537 AAGCATGGTCTTAAAGTCACAGTTACTAAGAGAT 1570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63305987190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5