BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23190.1
Length=1632
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899629 jgi|Araly1|899629|Al_scaffold_0004_279 2279 0.0
Ahg899631 jgi|Araly1|899631|Al_scaffold_0004_281 1953 0.0
Ahg932315 jgi|Araly1|932315|scaffold_400303.1 1923 0.0
> Ahg899629 jgi|Araly1|899629|Al_scaffold_0004_279
Length=1560
Score = 2279 bits (1234), Expect = 0.0
Identities = 1454/1561 (93%), Gaps = 11/1561 (1%)
Strand=Plus/Plus
Query 78 CTATAACTTCGAACTCCCATG-TTCAGTTCAACACATTTACAAGTTCTTCGATCTAATGG 136
||||||||| |||||| ||| |||| |||||||||||||||||||||| ||||||||||
Sbjct 5 CTATAACTTTTAACTCCAATGTTTCAATTCAACACATTTACAAGTTCTTAGATCTAATGG 64
Query 137 AAACCCATTTCCTAATTTTATCTCTCGCCTTCCTCTTTTTCATTTCTCTTAAACTTTTGT 196
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 65 AAACTCATTTCCTAATTTTATCTCTCGCCTTCTTCTTTTTCATTTCTCTTAAACTTTTGT 124
Query 197 TTGGTAAACGGCATAGCAAGTTTAACCTACCACCAAGTCCGGCTAGGCCACTTCCGTTTA 256
|||||||| |||||| |||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 125 TTGGTAAAAGGCATAACAAGTTTAACCTACCACCAAGTCCAGCTAGGCCACTTCCATTTA 184
Query 257 TTGGACACCTTCACCTCCTAAA-ACAGCCGCTTCACCGCACATTCCTCTCATTCTCTCAA 315
|||||||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||
Sbjct 185 TTGGACACCTTCACCTCCTAAAGA-AGCCGCTTCACCGTACATTCCTCTCTTTCTCTCAA 243
Query 316 TCACTAGGTGATGCCCCGATTTTCTCCCTCCGCCTCGGAAACCATCTCACGGTTGTTGTC 375
|| ||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 244 TCCCTAGGTGGCGCCCCGATTTTCTCCATCCGCCTCGGAAACCGTCTCACGGTTGTTGTC 303
Query 376 TCTTCCTACTCCATCGCTGAAGAATGTTTTACAAAAAACGACATTGTTTTGGCCAATAGG 435
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 304 TCCTCCTACTCCATCGCTGAAGAATGCTTTACAAAAAACGACATTGTTTTGGCCAATAGG 363
Query 436 CCAAAGTTCATTCTCGGGAAACACATTGAGTACAACTTCACCACTATGACCAGTGCGCCT 495
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 364 CCAAAGTTCATTCTCGGGAAACATATTGAGTACAACTTCACCACTATGACAAGTGCGCCT 423
Query 496 TATGGTGACCATTGGCGAAACCTACGCCGTATCGGCACCCTGGAGATCTTTTCGTCACAC 555
||||||||| | ||||||||||| ||||||||||| ||||| ||||| ||||| ||||||
Sbjct 424 TATGGTGACTACTGGCGAAACCTGCGCCGTATCGGTACCCTCGAGATATTTTCTTCACAC 483
Query 556 AAGCTCAACGGCTTTTTATCTGTCCGTAAAGATGAGATCCGACACTTGTTATTGCGCCTC 615
|||||||| |||||||||||| ||||||| ||||||||||||||||||||||||| |||
Sbjct 484 AAGCTCAATGGCTTTTTATCTATCCGTAAGGATGAGATCCGACACTTGTTATTGCTCCTA 543
Query 616 TCAAAAAACTCGCAACATGGTTTTGCAAAGGTTGAGATGAGACAATTGTTTTATGATTTG 675
|||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 544 TCAAAAAACTCGCAACATGGGTTTGCGAAGGTGGAGATGAGACAATTGTTTTATGATTTG 603
Query 676 ACTATCAACAACATTCTTCGAATGGTGGCTGGGAAACGATTTTATGGAGAGGGGACAGAA 735
|||||||||||||||||||||||| | || |||||||||| |||||||||||| |||||
Sbjct 604 ACTATCAACAACATTCTTCGAATGATAGCCGGGAAACGATATTATGGAGAGGGAACAGAG 663
Query 736 CAAGATGAAGTTGCGCGGCGAGTGA-CACAACTGATTGACGAGATTGTGTACAGGGCTGG 794
|||||||| |||||||||||||||| | || |||||||||||||||| |||||||||||
Sbjct 664 CAAGATGACGTTGCGCGGCGAGTGAGC-CAGTTGATTGACGAGATTGTTTACAGGGCTGG 722
Query 795 CGTTGGGAATGCAGCCGATTATATACCGATTTTGCGTTGGATCACAGATTTTGAGAAAGG 854
|| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 723 CGCTGGGAATGCAGCCGATTATTTACCGATTTTGCGTTGGATTACAGATTTTGAGAAAGG 782
Query 855 GGTCAAGGAGTTGGCGAGTCGGGTCGATGAGTTTTTGCAGAGTCTGGTGGATGAGAGACG 914
|||||||||||| |||||||| || ||||||||||||||||||||||| ||||||| |||
Sbjct 783 GGTCAAGGAGTTAGCGAGTCGAGTTGATGAGTTTTTGCAGAGTCTGGTCGATGAGAAACG 842
Query 915 TGTGCATAAACAAAAGGGTAACACTATGATGGATCACTTGC-TTTCTCTCCAAGAAACTC 973
|||| ||||| |||||||||||||||||||||||||||| | |||| |||||||| ||||
Sbjct 843 TGTGGATAAAGAAAAGGGTAACACTATGATGGATCACTTACTTTTC-CTCCAAGAGACTC 901
Query 974 AGCCTGATTACTATACAGATGTCACTCTTAAAGGAATCATAATTGTTATGATACTTGCCG 1033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 AGCCTGATTACTATACAGATGTCACTCTTAAAGGAATCATAATTGTTATGATACTTGCCG 961
Query 1034 GGACTGAAACATTAGCAGGGACTTTAGAATGGGCGATGCTTAATTTGTTGAACCATCCAG 1093
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 962 GGACTGAAACATTAGCAGGAACTTTAGAATGGGCGATGCTGAATTTGTTGAACCATCCAG 1021
Query 1094 AAGTATTAGAGAAAGCGAGGACCGAAATCGATACCGAAGTCGGTTTTGACCGGTTAATGG 1153
||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| |
Sbjct 1022 AAGTACTAGAGAAAGCGAGGACCGAAATCGATACCAAAATCGGTTTTGACCGGTTAATAG 1081
Query 1154 ATGAAGCTGATACTAAAAATCTGCCTTATCTCCAATGGATTGTGTTGGAGACCTTACGTC 1213
||||||| |||||||||||||| ||||||||||||||||| |||||||||||| ||||||
Sbjct 1082 ATGAAGCCGATACTAAAAATCTCCCTTATCTCCAATGGATAGTGTTGGAGACCCTACGTC 1141
Query 1214 TTTACCCGGTAGCTCCAACAAATATTCCACACATGACGTCAGATGATTGCATATTGGCAG 1273
|| | || | ||||||||||||| ||||||| ||||||||||||||||| || |||||||
Sbjct 1142 TTCATCCAGCAGCTCCAACAAATGTTCCACATATGACGTCAGATGATTGTATGTTGGCAG 1201
Query 1274 GATACGACGTTCCACGTGGGTCGATGTTATTGGTGAACGTATGGTCCATGCATAGAGACC 1333
||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||
Sbjct 1202 GATACGACGTTCCACGTGGTTCGATGTTATTGGTGAACATATGGGCCATGCATAGAGACC 1261
Query 1334 CGTCTA-TATGGGAAG-CCCCAGAAATGTTCAAGCCAGAGAGGTTCAAAAATGAAAAGCT 1391
|||| | ||||||||| |||| |||||||||||||||||||||||| ||||| |||||||
Sbjct 1262 CGTC-AGTATGGGAAGACCCC-GAAATGTTCAAGCCAGAGAGGTTCGAAAATCAAAAGCT 1319
Query 1392 TAATCAGAAGTTGTTGTCGTTTGGGTTTGGACGACGAGCTTGTCCCGGGGTTGGCCTAGC 1451
|||||| |||||||||||||||||| |||||||| |||||||||| ||||||||||||||
Sbjct 1320 TAATCAAAAGTTGTTGTCGTTTGGGATTGGACGAAGAGCTTGTCCTGGGGTTGGCCTAGC 1379
Query 1452 TCATCGGTTAATGAGCTTGGCTCTTGGATCGATGGTTCAGTGTTTCGAATGGCAGAGAAT 1511
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1380 TCATCGGTTACTGAGCTTGGCTCTTGGATCGATGGTTCAGTGTTTTGAATGGCAGAGAAT 1439
Query 1512 TGGTGAAGAATATGTAGACACTAGAGAAGAACCTATGGCCATGATGCGTCCTGCGACACC 1571
||| ||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1440 TGGAGAAGAATATGTTGACACGAGAGAAGAACTTATGGCCATGATGCGTCCTGCGACACC 1499
Query 1572 GTTGCTAGCCATGTGTAAAGCTCGTCCCATTGTCCATAAGTTTCTCGATGCTTTTGCTTG 1631
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1500 ATTGCTAGCCATGTGTAAAGCTCGTCCCATTGTCCATAAGATTCTTAATGCTTTTGCTTG 1559
Query 1632 A 1632
|
Sbjct 1560 A 1560
> Ahg899631 jgi|Araly1|899631|Al_scaffold_0004_281
Length=1545
Score = 1953 bits (1057), Expect = 0.0
Identities = 1394/1555 (90%), Gaps = 30/1555 (2%)
Strand=Plus/Plus
Query 95 CATG-TTCAGTTCAACACATTTACAAGTTCTTCGATCTAATGGAAACCCATTTCCTAATT 153
|||| ||||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 4 CATGTTTCAGTTCAACACATTTACAAGTTCTTAGATCTAATGGAGACTCATTTCCTAATT 63
Query 154 TTATCTCTCGCCTTCCTCT-TTTTCATTTCTCTTAAACTTTTGTTTGGTAAACGGCATAG 212
||||||||| ||| || | ||||||||||||||||||||||||||||||||||||||||
Sbjct 64 TTATCTCTCATCTT-CTTTGTTTTCATTTCTCTTAAACTTTTGTTTGGTAAACGGCATAG 122
Query 213 CAAGTTTAACCTACCACCAAGTCCGGCTAGGCCACTT-CCGTTTATTGGACACCTTCACC 271
|||||||||||||||||||||||||||| |||| ||| ||||| ||||||||||||||||
Sbjct 123 CAAGTTTAACCTACCACCAAGTCCGGCTTGGCC-CTTGCCGTTGATTGGACACCTTCACC 181
Query 272 TCCTAAAACAGCCGCTTCACCGCACATTCCTCTCATTCTCTCAATCACT-AGGTGATGCC 330
|||| || | ||||||||||||||||||||||| ||||||||||| || |||||| |||
Sbjct 182 TCCTGAAGCTCCCGCTTCACCGCACATTCCTCTCTTTCTCTCAATC-CTTAGGTGACGCC 240
Query 331 CCGATTTTCTCCCTCCGCCTCGGAAACCATCTCACGGTTGTTGTCTCTTCCTACTCCATC 390
|| ||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||
Sbjct 241 CCAATTTTCTCCCTCCGCCTCGGAAACCGTCTCACGGTTGTCGTCTCATCCTACTCCATC 300
Query 391 GCTGAAGAATGTTTTACAAAAAACGACATTGTTTTGGCCAATAGGCCAAAGTTCATTCTC 450
||||||||||| ||||||||||||||||||||||| |||||||||||| |||| ||||||
Sbjct 301 GCTGAAGAATGCTTTACAAAAAACGACATTGTTTTCGCCAATAGGCCAGAGTTGATTCTC 360
Query 451 GGGAAACACATTGAGTACAACTTCACCACTATGACCAGTGCGCCTTATGGTGACCATTGG 510
|||||||| ||||||||||||| |||||||||||| ||||||||||| |||||||| |||
Sbjct 361 GGGAAACATATTGAGTACAACTCCACCACTATGACTAGTGCGCCTTACGGTGACCACTGG 420
Query 511 CGAAACCTACGCCGTATCGGCACCCTGGAGATCTTTTCGTCACACAAGCTCAACGGCTTT 570
|||||| | |||||||||| |||| |||||||||| ||||||| ||||| ||||||||
Sbjct 421 CGAAACTTGCGCCGTATCGCCACCTTGGAGATCTTCGCGTCACATAAGCTTAACGGCTTC 480
Query 571 TTATCTGTCCGTAAAGATGAGATCCGACACTTGTTATTGCGCCTCTCAAAAAACTCGCAA 630
|||| ||||||||| ||||||||||||||||||||| | || ||||| |||||||||| |
Sbjct 481 TTATATGTCCGTAAGGATGAGATCCGACACTTGTTACTACGTCTCTCCAAAAACTCGCGA 540
Query 631 CATG-GTTTTGC-AAAGGTTGAGATGAGACAATTG-TTTTATGATTTGACTATCAACAAC 687
|||| |||| || |||| | ||||||||||| ||| |||| ||| |||||||||||||||
Sbjct 541 CATGAGTTT-GCGAAAG-TGGAGATGAGACATTTGCTTTT-TGAGTTGACTATCAACAAC 597
Query 688 ATTCTTCGAATGGTGGCTGGGAAACGATTTTATGGAGAGGGGACAGAACAAGATGAAGTT 747
|| || ||||||| || ||||||||||||||||| ||||| ||||| ||||| ||||||
Sbjct 598 GTTTTTAGAATGGTAGCGGGGAAACGATTTTATGGTGAGGGCACAGAGCAAGACGAAGTT 657
Query 748 GCGCGGCGAGTGACACAACTGATTGACGAGATTGTGTAC-AGGGCTGGCGTTGGGAATGC 806
|||| || ||||| ||| ||||| ||||||||||| || || ||||||| ||||||||
Sbjct 658 GCGCAGCAAGTGAGACAGCTGATGGACGAGATTGTA-ACCAGCGCTGGCGCCGGGAATGC 716
Query 807 AGCCGATTATATACCGATTTTGCGTTGGATCACAGATTTTGAGAAAGGGGTCAAGGAGTT 866
|||||| ||| |||| || |||||||||||||||||||||||||| | |||||| ||||
Sbjct 717 AGCCGACTATTTACCAATCATGCGTTGGATCACAGATTTTGAGAAACGCGTCAAGAAGTT 776
Query 867 GGCGAGTCGGGTCGATGAGTTTTTGCAGAGTCTGGTGGATGAGAGACGTG-TGCATAAAC 925
|||| |||| ||||| |||||||||||||||| |||||||||| ||||| || |||||
Sbjct 777 AGCGATTCGGATCGATAAGTTTTTGCAGAGTCTAGTGGATGAGAAACGTGCTG-ATAAAG 835
Query 926 AAAAGGGTAACACTATGATGGATCACTTGCTTTCTCTCCAAGAAACTCAGCCTGATTACT 985
||||||||| ||| ||||| |||||||||||||||||||||| ||||||||||||||| |
Sbjct 836 AAAAGGGTACCACAATGATAGATCACTTGCTTTCTCTCCAAGCAACTCAGCCTGATTATT 895
Query 986 ATACAGATGTCACTCTTAAAGGAATCATAATTGTTATGATACTTGCCGGGA-CTGAAACA 1044
|||||||||||| |||||||||| ||||| ||||||||||| |||| || | ||||||||
Sbjct 896 ATACAGATGTCATTCTTAAAGGACTCATAGTTGTTATGATAATTGCTGG-ATCTGAAACA 954
Query 1045 -TTAGCAGGGACTTTAGAATGGGCGATGCTT-AATTTGTTGAACCATCCAGAAGTATTAG 1102
|| ||| |||||||||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 955 ATT-GCATGGACTTTAGAATGGGCGATG-TTGAATTTGTTGAACCATCCAGAAGTGTTAA 1012
Query 1103 AGAAAGCGAGGACCGAAATCGATACCGAAG-TCGGTTTTGACCGGTTAATGGATGAAGCT 1161
||||||| ||||||||||||||||| ||| |||||||||||||||| || ||||||||
Sbjct 1013 AGAAAGCTAGGACCGAAATCGATAC-GAAAATCGGTTTTGACCGGTTGATTGATGAAGCG 1071
Query 1162 GATACTAAAAATCTGCCTTATCTCCAATGGATTGTGTTGGAGACCTTACGTCTTTACCCG 1221
|||||||||||||| ||||||||||||||||| |||||||||||| |||||||| |||||
Sbjct 1072 GATACTAAAAATCTCCCTTATCTCCAATGGATAGTGTTGGAGACCCTACGTCTTCACCCG 1131
Query 1222 GTAGCTCCAACAAATATTCCACACATGACGTCAGATGATTGCATATTGGCAGGATACGAC 1281
| ||||||||||||| ||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 1132 GCAGCTCCAACAAATGTTCCACATATGACGTCAGAGGATTGCATGTTGGCAGGATACGAC 1191
Query 1282 GTTCCACGTGGGTCGATGTTATTGGTGAACGTATGGTCCATGCATAGAGACCCGTCTATA 1341
|||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1192 ATTCCACGTGGATCGATGTTATTGGTGAACATATGGGCCATGCATAGAGACCCGTCTATA 1251
Query 1342 TGGGAAGCCCCAGAAATGTTCAAGCCAGAGAGGTTCAAAAATGAAAAGCTTAATCAGAAG 1401
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1252 TGGGAAGACCCAGAAATGTTCAAGCCAGAGAGGTTCAAAAATGAAAAGCTTAATCATAAG 1311
Query 1402 TTGTTGTCGTTTGGGTTTGGACGACGAGCTTGTCCCGGGGTTGGCCTAGCTCATCGGTTA 1461
||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||| ||
Sbjct 1312 TTGTTGTCGTTTGGGATTGGACGACGAGCCTGTCCCGGGAATGGCCTAGCTCATCGGGTA 1371
Query 1462 ATGAGCTTGGCTCTTGGATCGATGGTTCAGTGTTTCGAATGGCAGAGAATTGGTGAAGAA 1521
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1372 GTGAGCTTGGCTCTTGGATCGATGGTTCAGTGTTTCGAATGGCAGAGAATTGGAGAAGAA 1431
Query 1522 TATGTAGACACTAGAGAAGA--AC-CTATGGCCATGATGCGTCCTGCGACACCGTTGCTA 1578
||||| |||| || |||||| | || | | | |||||||||||| |||||||||| ||
Sbjct 1432 TATGTTGACAATAAAGAAGATGAAACTGTTGTCTTGATGCGTCCTGTGACACCGTTGTTA 1491
Query 1579 GCCATGTGTAAAGCTCGTCCCATTGTCCATAAGTTTC-TCGATGCTTTTGCTTGA 1632
||||||||||||||||||||||||||||||||| ||| | |||||||||| ||||
Sbjct 1492 GCCATGTGTAAAGCTCGTCCCATTGTCCATAAGATTCGT-GATGCTTTTGATTGA 1545
> Ahg932315 jgi|Araly1|932315|scaffold_400303.1
Length=1534
Score = 1923 bits (1041), Expect = 0.0
Identities = 1352/1502 (90%), Gaps = 22/1502 (1%)
Strand=Plus/Plus
Query 114 TTACAAGTTCTTCGATCTAATGGAAACCCATTTCCTAATTTTATCTCTCGCCTTCCTCTT 173
|||| |||||| ||||||||||| ||||||||||||||| ||||||||| |||| || |
Sbjct 2 TTACGAGTTCTAAGATCTAATGGAGACCCATTTCCTAATTCTATCTCTCGTCTTCTTCGT 61
Query 174 TTTCATTTCTCTTAAACTTTTGTTTGGTAAACGGCATAGCAAGTTTAACCTACCACCAAG 233
|| ||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 62 TTGCATTTCTCTTACACTTTTTTTTGGTAAACGGCAAAGCAAGTTTAACCTACCACCAAG 121
Query 234 TCCGGCTAGGCCACTTCCGTTTATTGGACACCTTCACCTCCTAAAACA-GCCGCTTCACC 292
|||||||||||| || ||||| |||||||||||||||||||| || | |||||||||||
Sbjct 122 TCCGGCTAGGCCCCTGCCGTTGATTGGACACCTTCACCTCCT-GAAGATGCCGCTTCACC 180
Query 293 GCACATTCCTCTCATTCTCTCAATCACTAGGTGATGCCCCGATTTTCTCCCTCCGCCTCG 352
||||||||||||| ||||||||||| |||||||| || || ||||||| |||||||||||
Sbjct 181 GCACATTCCTCTCTTTCTCTCAATCCCTAGGTGACGCTCCAATTTTCTGCCTCCGCCTCG 240
Query 353 GAAACCATCTCACGGTTGTTGTCTCTTCCTACTCCATCGCTGAAGAATGTTTTACAAAAA 412
|||||| ||||| |||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 241 GAAACCGTCTCATGGTTATTGTCTCTTCCTACTCCATCGCTGAAGAATGCTTTACAAAAA 300
Query 413 ACGACATTGTTTTGGCCAATAGGCCAAAGTTCATTCTCGGGAAACACATTGAGTACAACT 472
||||||||||||| |||||||||||| |||||||| |||||||||| |||||||||||||
Sbjct 301 ACGACATTGTTTTAGCCAATAGGCCAGAGTTCATTGTCGGGAAACATATTGAGTACAACT 360
Query 473 TCACCACTATGACCAGTGCGCCTTATGGTGACCATTGGCGAAACCTACGCCGTATCGGCA 532
|||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||| |||
Sbjct 361 CCACCACTATGACAAGTGCGCCTTATGGTGACCACTGGCGAAACCTGCGCCGCATCTGCA 420
Query 533 CCCTGGAGATCTTTTCGTCACACAAGCTCAACGGCTTTTTATCTGTCCGTAAAGATGAGA 592
|||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||
Sbjct 421 CCCTGGAGATCTTTTCGTCACACAGGCTCAATGGCTTTTTATCTGTCCGTAAGGATGAGA 480
Query 593 TCCGACACTTGTTATTGCGCCTCTCAAAAAACTCGCAACATGGTTTTGCAAAGGTTGAGA 652
|||||||||||||| | || ||||| |||||||||| |||||| ||||| ||||| ||||
Sbjct 481 TCCGACACTTGTTACTACGTCTCTCCAAAAACTCGCGACATGGGTTTGCCAAGGTGGAGA 540
Query 653 TGAGACAAT-TGTTTTATGATTTGACTATCAACAACATTCTTCGAATGGTGGCTGGGAAA 711
|| || | | |||||| ||| ||||||||||| |||||| || ||||||| || |||||
Sbjct 541 TGCGA-AGTCTGTTTTTTGAGTTGACTATCAATAACATTTTTAGAATGGTAGCCGGGAAG 599
Query 712 CGATTTTATGGAGAGGGGACAGAACAAGATGAAGTTGCGCGGCGAGTGACACAACTGATT 771
||||||||||| ||||| ||||| ||||| |||||||||| || ||||| ||||||||||
Sbjct 600 CGATTTTATGGTGAGGGCACAGAGCAAGACGAAGTTGCGCAGCAAGTGAGACAACTGATT 659
Query 772 GACGAGATTGTGTAC-AGGGCTGGCGTTGGGAATGCAGCCGATTATATACCGATTTTGCG 830
||||||||| ||| | || ||||||| ||||||||||||||||||||||| || |||||
Sbjct 660 GACGAGATTATGT-CTAGCGCTGGCGCAGGGAATGCAGCCGATTATATACCAATCTTGCG 718
Query 831 TTGGATCACAGATTTTGAGAAAGGGGTCAAGGAGTTGGCGAGTCGGGTCGATGAGTTTTT 890
|||||||||| ||||||||||| ||||| |||| ||||||||| ||||| |||||||
Sbjct 719 TTGGATCACAAATTTTGAGAAACACATCAAGAAGTTAGCGAGTCGGCTCGATAAGTTTTT 778
Query 891 GCAGAGTCTGGTGGATGAGAGACGTGTGCATAAACAAAAGGGTAACACTATGATGGATCA 950
|||||||||||||||||||| ||||| | | ||| ||||||||| ||||||||| |||||
Sbjct 779 GCAGAGTCTGGTGGATGAGAAACGTGCGGAGAAAGAAAAGGGTACCACTATGATAGATCA 838
Query 951 CTTGCTTTCTCTCCAAGAAACTCAGCCTGATTACTATACAGATGTCACTCTTAAAGGAAT 1010
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 839 CTTGCTTTCTCTCCAAGAAACTCAGCCTGATTATTATACAGATGTCACTCTTAAAGGAAT 898
Query 1011 CATAATTGTTATGATACTTGC-CGGGA-CTGAAACATTAGCAG-GGACTTTAGAATGGGC 1067
||| ||||||||||| || | | ||| |||||||| |||| | ||||||||||||||||
Sbjct 899 AATACTTGTTATGATA-TT-CGCTGGATCTGAAACAATAGC-GTGGACTTTAGAATGGGC 955
Query 1068 GATGCTT-AATTTGTTGAACCATCCAGAAGTATTAGAGAAAGCGAGGACCGAAATCGATA 1126
|||| || ||||||||||||||||||||||| ||| ||||||| |||||||||||| |||
Sbjct 956 GATG-TTGAATTTGTTGAACCATCCAGAAGTGTTAAAGAAAGCTAGGACCGAAATCAATA 1014
Query 1127 CCGA-AGTCGGTTTTGACCGGTTAATGGATGAAG-CTGATACTAAAAATCTGCCTTATCT 1184
||| | ||||||||||||||||||| |||| || | ||||||| |||||| ||||||||
Sbjct 1015 -CGATAATCGGTTTTGACCGGTTAATAGATG-AGTCGGATACTATAAATCTTCCTTATCT 1072
Query 1185 CCAATGGATTGTGTTGGAGACCTTACGTCTTTACCCGGTAGCTCCAACAAAT-ATTCCAC 1243
|||||||||||||||||||||| |||||||||||||||||||||| ||| | | |||||
Sbjct 1073 CCAATGGATTGTGTTGGAGACCCTACGTCTTTACCCGGTAGCTCCTACACTTGA-TCCAC 1131
Query 1244 ACATGACGTCAGATGATTGCATATTGGCAGGATACGACGTTCCACGTGGGTCGATGTTAT 1303
| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1132 ATATGACGTCAGAGGATTGCATGTTGGCAGGATACGACGTTCCACGTGGTTCGATGTTAT 1191
Query 1304 TGGTGAACGTATGGTCCATGCATAGAGACCCGTCTATATGGGAAG-CCCCAGAAATGTTC 1362
|||||||| ||||| |||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1192 TGGTGAACATATGGGCCATGCATAGAGACCCGTCTATATGGGAAGACCCC-GAAATGTTC 1250
Query 1363 AAGCCAGAGAGGTTCAAAAATGAAAAGCTTAATCAGAAGTTGTTGTCGTTTGGGTTTGGA 1422
||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1251 AAGCCAGAGAGGTTCGTAAATGAAAAGCTTAATCAAAAGTTGTTGTCGTTTGGGATTGGA 1310
Query 1423 CGACGAGCTTGTCCCGGGGTTGGCCTAGCTCATCGGTTAATGAGCTTGGCTCTTGGATCG 1482
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1311 CGACGAGCTTGTCCCGGGGTTGGCCTAGCTCATCGGGTAGTGAGCTTGGCTCTTGGATCG 1370
Query 1483 ATGGTTCAGTGTTTCGAATGGCAGAGAATTGGTGAAGAATATGTAGACACTAGAGAAGAA 1542
|||||||||||||| || |||||||||||||| ||||||||||| |||| ||||||||||
Sbjct 1371 ATGGTTCAGTGTTTTGAGTGGCAGAGAATTGGAGAAGAATATGTTGACAGTAGAGAAGAA 1430
Query 1543 CCTATGGCCATGATGCGTCCTGCGACACCGTTGCTAGCCATGTGTAAAGCTCGTCCCATT 1602
|| ||| || |||||||| ||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1431 CCCATGTCCTTGATGCGTACTGCGACACCGTTGCTAGCTATGTGTAAAGCTCGACCCATT 1490
Query 1603 GT 1604
||
Sbjct 1491 GT 1492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61172933470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5