BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23200.1
Length=2633
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481192 jgi|Araly1|481192|fgenesh2_kg.4__252__AT2G23200.1 3528 0.0
> Ahg481192 jgi|Araly1|481192|fgenesh2_kg.4__252__AT2G23200.1
Length=2609
Score = 3528 bits (1910), Expect = 0.0
Identities = 2412/2648 (91%), Gaps = 60/2648 (2%)
Strand=Plus/Plus
Query 2 GACCACACATGTTTTTTCATCCATTGACCTCAAAGACTTGACTTTCTCTCTTTCTCCTTC 61
|||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1 GACCACACATGTTTCTTCATCCATTGACCTCAAATACTTGACTTTCCCTCTTTCTCCTTC 60
Query 62 TCTGCATCAAAGCTATGGAGAATTTCTGTTTTCAAGACTCTGTTTCTCTATTTATCACGA 121
||||||||||||||||||||||||||||||||||| ||||||||||||| ||| | ||||
Sbjct 61 TCTGCATCAAAGCTATGGAGAATTTCTGTTTTCAAAACTCTGTTTCTCTCTTTGTAACGA 120
Query 122 TCATGGTTCTTGTTCTTCTCCCCCGTCTCAGTCTTTCTGATACTTCGACGTACACCCGTC 181
| ||||||||||||||||| || |||||||||||||||| ||||||||||||||| ||||
Sbjct 121 TTATGGTTCTTGTTCTTCTTCCTCGTCTCAGTCTTTCTGCTACTTCGACGTACACTCGTC 180
Query 182 CTGAGAATTTTTACGTCAACTGTGGATCGGATTCTAATGTATTTTATGGTGGCCAGACCT 241
||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 181 CTGAGAAGTTTTACGTCAACTGTGGATCGGATTCTAATGTCTTTTATGGTGGTCAGACCT 240
Query 242 TCGTCGGAGATACCAAC-TCGAGTACTAACTCAGTTTCCTTCACCAACAAAGGAACTGAA 300
| || ||||||| ||| || ||| |||||| |||||||||||| | | | ||||||||
Sbjct 241 TTGTTGGAGATAATAACTTC-AGTGGTAACTCTGTTTCCTTCACC-A-ATA-GAACTGAA 296
Query 301 GTCATCAACGACCAATCGTCCGTTGCGCCTGAAATATACCGGACGGTTAGGATATTTAGA 360
|||||| || ||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 297 GTCATCGACAACCAATCGTCCGTTGCGCCTGAAATCTACCGGACGGTTAGGATATTCAGA 356
Query 361 CACCCTTCTTCTTACAAGTTCAAACTTGATTCTCTGGGTCTGCACTTTGTGCGTCTCCAT 420
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 357 CGCCCTTCTTCTTACAAGTTCAAACTTGATTCTCTTGGTCTGCACTTTGTGCGTCTCCAT 416
Query 421 TTCTCTGTTGTGTTTTCTCGGGCAGATCTTTTAACTGCTCGGTTCACTGTCTCTGCTACC 480
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 417 TTCTCTGTTGTGTTATCTCGGGCAGATCTTTTAACTGCTCGGTTCACTGTCTCTGCAACT 476
Query 481 TCTGGTTCTAATCATCACTTGAAAAGTTTCTCGCCTCAGAATCTCACTAATACCCCACGA 540
|||||||||||||||||||||||||||||| ||| ||||||| ||||| | |||||||||
Sbjct 477 TCTGGTTCTAATCATCACTTGAAAAGTTTCCCGCTTCAGAATTTCACTGAGACCCCACGA 536
Query 541 GTTGAAGAGTTTCTCCTGATGATGAACTCGCTGGAGTTCGAAATTCGATTTGTGCCCGAT 600
|||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||| ||
Sbjct 537 GTTGAAGAGTTTTTCCTGATGATGGACTCGCTGGAGTTCGAAATTCGATTAGTGCCTAAT 596
Query 601 CATTCCTCTTTAGCTCTCATCAATGCCATCGAAGTGTTCTCTGCTCCTGATGACCTCGAA 660
||||||||||| ||| || |||||||||| |||||||||||||||||| |||||||||||
Sbjct 597 CATTCCTCTTTGGCTTTCGTCAATGCCATTGAAGTGTTCTCTGCTCCTAATGACCTCGAA 656
Query 661 ATCCCA-TCAGCTTCCGATAAGAATCTGCATACGATTTACAGATTAAACGTAGGAGGCGA 719
|| || ||| || ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 657 AT-TCAGCCAGATTTCGACAAGAATCTGCATACGATTTACAGATTAAACGTAGGAGGCGA 715
Query 720 GAAAATCACTCCGGATAATGATACCTTGGGACGAACTTGGCT-GCCTGACGATGATGACT 778
||||||||| |||||||||||||| ||||||||||||||| | |||||| ||||| ||||
Sbjct 716 GAAAATCACACCGGATAATGATACTTTGGGACGAACTTGG-TCGCCTGATGATGAAGACT 774
Query 779 TTCTCTACCGAAAAGATTCAGCGAGGAACATTAATTCAACACAAACGCCTAACTACGTGG 838
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 775 TTCTCTACCGAAAAGATTCTGCGAGGAACATTAATTCAACACAAACGCCTAACTAC---- 830
Query 839 GAGGGTTAAGTTCAGCCACGGACTCCACTGCTCCTGATTTCGTCTACAAGACAGCTAAAG 898
||||||||||| | ||||||||||| |||||||||||||||||||||||
Sbjct 831 -----------TCAGCCACGGAATTCACTGCTCCTGCTTTCGTCTACAAGACAGCTAAAG 879
Query 899 CAATGAACCGTAGCTCGAATGAGCAGGTGGGGATGTTGATGAATGTTACATGGTCGTTCA 958
|||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 880 CAATGAACCGCAGCTCGAATGAGCGGGTGGGGATGTTGACGAATGTTACATGGTCGTTCA 939
Query 959 AGGTCAAAAGTAACCATAGACACTTCATCAGGATTCATTTTTCTGATATTTTGAGCAACT 1018
|||||||||||||| ||| ||||||||||||| ||||||| ||||||||||| || ||||
Sbjct 940 AGGTCAAAAGTAACTATAAACACTTCATCAGGCTTCATTTCTCTGATATTTTAAGTAACT 999
Query 1019 TATCAAACTCCGACTCCGATTTCTATCTCTTTGTAAATGGGTATTGGCGAGTAGATGTAA 1078
| |||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||
Sbjct 1000 TCTCAAACTCCGACTCCGATTTCTCTCTCTATGTAAATGGGTACTGGCGAGTAGATGTAA 1059
Query 1079 AGCCTTCAGAGCAGCCTAGGTTGGCGAGTCCGTTTTTTAAGGATGTCGTGAATGTCTCTG 1138
|||||||||| ||||||| |||||| | ||||||||||| |||||||||||||||||||
Sbjct 1060 AGCCTTCAGACCAGCCTAAGTTGGCAACTCCGTTTTTTATCGATGTCGTGAATGTCTCTG 1119
Query 1139 ATGGTTCTGGACTCTTGAATATCAGTATAGGTACCAAGGAGGCCAATAAGGATGCTGGTT 1198
|||||||||||||||||||||| ||||||||||| ||||||||| |||| ||||||||||
Sbjct 1120 ATGGTTCTGGACTCTTGAATATTAGTATAGGTACTAAGGAGGCCGATAAAGATGCTGGTT 1179
Query 1199 TTCTGAATGGTCTGGAGATGATGGAGGTTTTGAGTAAATCTGGTTCTGATTATTCAAATA 1258
|||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||
Sbjct 1180 TTCTGAATGGTCTGGAGATGATGGAGTTTTTGATTAAATCTGGTTCTGATTCTTCAAATA 1239
Query 1259 GAAGCAGTTCCCGGGTTCACATCATCACTGGTTGTGCTGTTGCTGCTGCTGCTGCATCAG 1318
||||||||||||||||||| |||||| |||| | || |||| | ||||||||||||| |
Sbjct 1240 GAAGCAGTTCCCGGGTTCATATCATCGCTGG-T-TG-TGTT--T-CTGCTGCTGCATCGG 1293
Query 1319 CTTTGGTCTTCAGTTTGCTGTTTATGGTATTCTTGAAGCGGAGGAGATCGAAGAAGACTA 1378
|| ||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1294 CTCTGGTCTTGAGTTTGTTGTTTATGGTATTCTTGAAGAGGAGGAGATCGAAGAAGACTA 1353
Query 1379 AGCCAGAGGTTGAGGGCACTGTATGGTCTCCTTTGCCATTGCACAGAGGTGGGAGTTCAG 1438
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1354 AGCCAGACGTTGAGGGCACTGTATGGTCTCCTTTGCCATTGCACAGAGGTGGAAGTTCAG 1413
Query 1439 ACAATAGACCTATCTCTCAATACCACAACTCCCCATTACGCAACCTACACTTAGGCTTAA 1498
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1414 ACAATAGACCTATCTCTCAATACCACAACTCGCCATTACGCAACCTACACTTAGGCTTAA 1473
Query 1499 CGATTCCCTTCACAGACATTCTAAGCGCTACAAACAACTTCGACGAGCAGTTGTTGATCG 1558
|||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||
Sbjct 1474 CGATTCCCTTCACAGACATTCTGAGCGCTACAAACAATTTCGACGAGGAGTTGTTGATCG 1533
Query 1559 GGAAAGGCGGGTTTGGCTACGTTTACAAAGCTATTCTTCCCGATGGAACCAAAGCCGCTA 1618
||||||||||||| || | |||||||||||||||||||||||||||||||||||||| |
Sbjct 1534 GGAAAGGCGGGTTCGGAGATGTTTACAAAGCTATTCTTCCCGATGGAACCAAAGCCGCGA 1593
Query 1619 TCAAACGAGGCAAAACCGGCTCAGGACAAGGGATCTTAGAGTTTCAAACCGAGATTCAAG 1678
||||| ||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1594 TCAAAAGAGGCAAGACCGGTTCAGGACAAGGCATCTTAGAGTTTCAAACCGAGATTCAAG 1653
Query 1679 TCCTCTCAAGAATCCGACATAGACACCTCGTCTCGCTAACGGGATACTGCGAAGAAAACT 1738
|||||||||||||||| || | |||||||||||| |||||||| ||||||||||||||||
Sbjct 1654 TCCTCTCAAGAATCCGGCACAAACACCTCGTCTCTCTAACGGGCTACTGCGAAGAAAACT 1713
Query 1739 CCGAAATGATCCTCGTCTACGAGTTTATGGAGAAAGGTACACTCAAAGAACATCTATACG 1798
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1714 CGGAAATGATCCTCGTCTACGAGTTTATGGAGAAAGGTACACTTAAAGAACATCTATACG 1773
Query 1799 GCTCGAATCTACCTTCATTAACATGGAAACAAAGACTAGAGATATGCATTGGAGCAGCTA 1858
|||||||||||||| | || |||||||||||||||||||||| ||||||||||||||||
Sbjct 1774 GCTCGAATCTACCTCCCTTGTCATGGAAACAAAGACTAGAGATCTGCATTGGAGCAGCTA 1833
Query 1859 GAGGTTTAGATTATCTCCACAGTAGTGGCTCAGAAGGAGCAATCATTCACAGAGACGTCA 1918
|||||||| |||||||||||||| || | ||||||||| |||||| |||||||||||||
Sbjct 1834 GAGGTTTACATTATCTCCACAGT--TG-CGCAGAAGGAGTAATCATACACAGAGACGTCA 1890
Query 1919 AATCAACAAACATATTACTAGACGAGCACAATATAGCAAAAGTCGCAGATTTCGGATTAT 1978
|||||||||||||| ||||||||||| ||| || ||| |||||||| ||||||||| | |
Sbjct 1891 AATCAACAAACATACTACTAGACGAGAACACTACAGCCAAAGTCGCCGATTTCGGACTCT 1950
Query 1979 CGAAA---A---TTCATAATCAAGATGAAAGC-AATATCAGCATAAACATCAAAGGAACA 2031
||||| | ||| |||||||||| || | ||||||||| |||||||||||||||||
Sbjct 1951 CGAAACTCACGATTCGTAATCAAGATCCAA-CTAATATCAGCCTAAACATCAAAGGAACA 2009
Query 2032 TTCGGTTACTTGGATCCAGAATATCTCCAAACACATAAATTAACAGAGAAATCAGATGTT 2091
||||||||||| |||||||| |||||||||||||||| |||||||||||||| || |||
Sbjct 2010 TTCGGTTACTTAGATCCAGAGTATCTCCAAACACATATCTTAACAGAGAAATCTGACGTT 2069
Query 2092 TACGCATTCGGAGTCGTCCTCCTCGAGGTACTGTTCGCGAGACCAGCTATAGATCCTTAT 2151
||||||||||||||||||||||||||||| |||| |||||||||||| ||||| | |
Sbjct 2070 TACGCATTCGGAGTCGTCCTCCTCGAGGTTTTGTTAGCGAGACCAGCTCTAGATTGT-A- 2127
Query 2152 CT-TCC-TCACGAAGAAGTGAATCTATCGGAATGGGTGATGTTCTGCAAATCAAAAGGTA 2209
|| | | | ||||||||| ||||||| ||||||||| | |||||||||||||| ||||||
Sbjct 2128 CTGTGCGTTACGAAGAAGCGAATCTAGCGGAATGGGCGTTGTTCTGCAAATCAGAAGGTA 2187
Query 2210 CAATCGATGAGATCTTAGATCCGAGTTTGATAGGTCAAATTGAGACGAATTCGTTGAAGA 2269
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 2188 AAATCGATGAGATCTTAGATCCGAGTTTGATAGGTCAAATCGAGACGAATTCTTTGAAGA 2247
Query 2270 AATTCATGGAAATTGCTGAGAAATGTTTGAAAGAGTATGGAGATGAGAGACCGAGTATGA 2329
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2248 AATTCATGGAGATTGCTGAGAAATGTTTGAAAGAGCGTGGAGATGAGAGACCGAGTATG- 2306
Query 2330 GG-GATGTGATTTGGGATCTTGAGTATGTTCTTCAGCTACAGATGATGACGAATCGTCGA 2388
|| ||||||||||||||||||||||||||||||||||| ||||||||| ||| |||| ||
Sbjct 2307 GGAGATGTGATTTGGGATCTTGAGTATGTTCTTCAGCTTCAGATGATGCCGATTCGTAGA 2366
Query 2389 GAGGCTCATGAAGAAGATAGTACGGCGATTAAT-TCC---GGTGGTTCGTTGGTTGCTCC 2444
|||||||||||||||||||||||||||||| | ||| |||||||||||||| |||||
Sbjct 2367 GAGGCTCATGAAGAAGATAGTACGGCGATTG-TCTCCTCTGGTGGTTCGTTGGTGGCTCC 2425
Query 2445 GAGGTTGATGGTGAGTGATTCGTTTAGTACGAACTCGATAT-TTCAGAATGG-TGATGAA 2502
||||||||||||||||||||||||||| |||||||| | | ||||||| || |||||||
Sbjct 2426 GAGGTTGATGGTGAGTGATTCGTTTAGCGCGAACTCGTT-TGTTCAGAA-GGATGATGAA 2483
Query 2503 TCGAAGAACAGATTTGGATTTACAGATTCATCGGAGACTCGAGTTTTTTCGCAGTTGAAG 2562
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 2484 TCGAAGAACAGATTTGGATTTACGGATTCGTCGGAGACTCGAGTTTTTTCGCAGTTGAAG 2543
Query 2563 ATCTCTGATGCAAGATGATGAAATC-TTTCGCAATTGTGTGTAAAATTATAATTTT-TTC 2620
|||||||| ||||||||||||||| ||| ||||||||||||||||||||| ||| ||
Sbjct 2544 ATCTCTGACGCAAGATGATGAAATGATTTT-CAATTGTGTGTAAAATTATAAATTTCTT- 2601
Query 2621 GAAATGTG 2628
||||||||
Sbjct 2602 GAAATGTG 2609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99301268715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5