BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23220.1
Length=1548
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899631 jgi|Araly1|899631|Al_scaffold_0004_281 2346 0.0
Ahg932315 jgi|Araly1|932315|scaffold_400303.1 2039 0.0
Ahg899629 jgi|Araly1|899629|Al_scaffold_0004_279 1893 0.0
> Ahg899631 jgi|Araly1|899631|Al_scaffold_0004_281
Length=1545
Score = 2346 bits (1270), Expect = 0.0
Identities = 1459/1551 (94%), Gaps = 9/1551 (1%)
Strand=Plus/Plus
Query 1 ATGCATGTTTCAATTCAACACATTTACAAATTCTTAGATCTAAATATGGAAACCT-ATTT 59
|||||||||||| |||||||||||||||| ||||||||||| | ||||| | || ||||
Sbjct 1 ATGCATGTTTCAGTTCAACACATTTACAAGTTCTTAGATCT--A-ATGGAGA-CTCATTT 56
Query 60 CCTACTTTTATCTCTCGCCTTCTTCCTTTTCATTTCTGTTAAACTTTTGTTTGGTAAACG 119
|||| ||||||||||| |||||| ||||||||||| ||||||||||||||||||||||
Sbjct 57 CCTAATTTTATCTCTCATCTTCTTTGTTTTCATTTCTCTTAAACTTTTGTTTGGTAAACG 116
Query 120 GCTTAGCAAGTTTAACCTACCACCAAGTCCGGCTAGGCCCCTGCCGTTGATTGGACACCT 179
|| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 117 GCATAGCAAGTTTAACCTACCACCAAGTCCGGCTTGGCCCTTGCCGTTGATTGGACACCT 176
Query 180 TCACCTCCTGAAACTCCCGCTTCACCGCACATTCCTCTCTTTCTCTCAATCCTTAGGTGG 239
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 TCACCTCCTGAAGCTCCCGCTTCACCGCACATTCCTCTCTTTCTCTCAATCCTTAGGTGA 236
Query 240 CGCCCCAATTTTCTGCCTCCGCCTCGGAAACCGTCTCACGGTTGTAGTCTCTTCATACTC 299
|||||||||||||| |||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 237 CGCCCCAATTTTCTCCCTCCGCCTCGGAAACCGTCTCACGGTTGTCGTCTCATCCTACTC 296
Query 300 CATCGCTGAAGAATGTTTTACAAAAAACGACATTGTTTTCGCCAATAGGCCAGAGTTAAT 359
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 297 CATCGCTGAAGAATGCTTTACAAAAAACGACATTGTTTTCGCCAATAGGCCAGAGTTGAT 356
Query 360 TCTCGGGAAACATATTGAGTACAACTCCACCACTATGACTAGTGCGCCTTATGGTGACCA 419
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 357 TCTCGGGAAACATATTGAGTACAACTCCACCACTATGACTAGTGCGCCTTACGGTGACCA 416
Query 420 CTGGCGAAACTTGCGCCGCATTGCTACCCTGGAGATCTTCGCATCACATAAGCTCAACGG 479
|||||||||||||||||| || || ||| ||||||||||||| ||||||||||| |||||
Sbjct 417 CTGGCGAAACTTGCGCCGTATCGCCACCTTGGAGATCTTCGCGTCACATAAGCTTAACGG 476
Query 480 CTTCTTATCTGTCCGTAAGGATGAGATCCGTCAGTTGCTACTACGTCTCTCCAAAAACTC 539
|||||||| ||||||||||||||||||||| || ||| ||||||||||||||||||||||
Sbjct 477 CTTCTTATATGTCCGTAAGGATGAGATCCGACACTTGTTACTACGTCTCTCCAAAAACTC 536
Query 540 GAGACATGGGTTTGCGAAGGTGGAGATGAGACATTTGCTTTTTGAGTTGACTATCAATAA 599
| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 537 GCGACATGAGTTTGCGAAAGTGGAGATGAGACATTTGCTTTTTGAGTTGACTATCAACAA 596
Query 600 CGTTTTTAGAATGGTAGCCGGGAAACGATTTTATGGTGAGGGCACAGAGCAAGACGAAGT 659
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CGTTTTTAGAATGGTAGCGGGGAAACGATTTTATGGTGAGGGCACAGAGCAAGACGAAGT 656
Query 660 TGCGCAGCAAGTGAGACATCTGATGGACGAGATTGTGACCAGCGCTGGCGCCGGGAATGC 719
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 657 TGCGCAGCAAGTGAGACAGCTGATGGACGAGATTGTAACCAGCGCTGGCGCCGGGAATGC 716
Query 720 AGCCGACTATTTACCAATCATGCGTTGGTTCACAAATTTTGAGAAACGCGTCAAGAATTT 779
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||
Sbjct 717 AGCCGACTATTTACCAATCATGCGTTGGATCACAGATTTTGAGAAACGCGTCAAGAAGTT 776
Query 780 AGCGATTCGTATCGATAAGTTTTTGCAGAGTCTTGTGGATGAGAAACGTGCGGATAAAGA 839
||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 777 AGCGATTCGGATCGATAAGTTTTTGCAGAGTCTAGTGGATGAGAAACGTGCTGATAAAGA 836
Query 840 AAAGGGTACCACTATGATAGATCACTTGCTTTCTCTCCAAG-AATCTCAGCCTGATTACT 898
|||||||||||| |||||||||||||||||||||||||||| || ||||||||||||| |
Sbjct 837 AAAGGGTACCACAATGATAGATCACTTGCTTTCTCTCCAAGCAA-CTCAGCCTGATTATT 895
Query 899 ATACAGATGTCACTCTTAAAGGAATTATAATTGTAATGATAATTGCTGGATCTGAAACAA 958
|||||||||||| |||||||||| | ||| |||| |||||||||||||||||||||||||
Sbjct 896 ATACAGATGTCATTCTTAAAGGACTCATAGTTGTTATGATAATTGCTGGATCTGAAACAA 955
Query 959 TAGCATGGACTTTAGAATGGGCGATGCTGAATGTGTTGAACCATCCAGAAGTATTAAAGA 1018
| |||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||
Sbjct 956 TTGCATGGACTTTAGAATGGGCGATGTTGAATTTGTTGAACCATCCAGAAGTGTTAAAGA 1015
Query 1019 AAGCTAGGACCGAAATCGATACGAAAATCGGTTTTGACCGGTTAATGGATGAAGCTGATA 1078
||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct 1016 AAGCTAGGACCGAAATCGATACGAAAATCGGTTTTGACCGGTTGATTGATGAAGCGGATA 1075
Query 1079 CTAAAAATCTGCCTTATCTCCAATGGATTGTGTTGGAGACCTTACGTCTTCACCCGGCAG 1138
|||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1076 CTAAAAATCTCCCTTATCTCCAATGGATAGTGTTGGAGACCCTACGTCTTCACCCGGCAG 1135
Query 1139 CTCCAACAAATGTTCCACATAGT-ACGTCAGAGGATTGCATGTTGGCAGGATATGATGTT 1197
||||||||||||||||||||| | ||||||||||||||||||||||||||||| || ||
Sbjct 1136 CTCCAACAAATGTTCCACATA-TGACGTCAGAGGATTGCATGTTGGCAGGATACGACATT 1194
Query 1198 CCACGTGGTTCGATGTTATTGGTGAACATATGGTCCATGCATAGAGACCCGTCTATATGG 1257
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1195 CCACGTGGATCGATGTTATTGGTGAACATATGGGCCATGCATAGAGACCCGTCTATATGG 1254
Query 1258 GAAGACCCAGAAATGTTCAAGCCAGAGAGGTTCAAAAATGAAAAGCTAAATCAAAAGTTG 1317
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1255 GAAGACCCAGAAATGTTCAAGCCAGAGAGGTTCAAAAATGAAAAGCTTAATCATAAGTTG 1314
Query 1318 TTGTCGTTTGGGATGGGACGACGAGCCTGTCCCGGGTATGGCCTAGCTCATCGGGTAGTG 1377
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1315 TTGTCGTTTGGGATTGGACGACGAGCCTGTCCCGGGAATGGCCTAGCTCATCGGGTAGTG 1374
Query 1378 AGCTTGACTCTTGGATCGATGGTTCAGTGTTTCGAATGGCAGAGAATTGGACAAGAATAT 1437
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1375 AGCTTGGCTCTTGGATCGATGGTTCAGTGTTTCGAATGGCAGAGAATTGGAGAAGAATAT 1434
Query 1438 GTTGACAATAGTGAAGACAAAACTGTGGTCTTGATGCGTCCTACGACACCGTTGCTAGCC 1497
|||||||||| ||||| ||||||| ||||||||||||||| |||||||||| |||||
Sbjct 1435 GTTGACAATAAAGAAGATGAAACTGTTGTCTTGATGCGTCCTGTGACACCGTTGTTAGCC 1494
Query 1498 ATGTGTAAAGCTCGTCCCATTGTCCATGAGATTCTTGATGCTTTTGCTTGA 1548
||||||||||||||||||||||||||| |||||| ||||||||||| ||||
Sbjct 1495 ATGTGTAAAGCTCGTCCCATTGTCCATAAGATTCGTGATGCTTTTGATTGA 1545
> Ahg932315 jgi|Araly1|932315|scaffold_400303.1
Length=1534
Score = 2039 bits (1104), Expect = 0.0
Identities = 1375/1505 (91%), Gaps = 22/1505 (1%)
Strand=Plus/Plus
Query 24 TTACAAATTCTTAGATCTAAATATGGAAACCTATTTCCTACTTTTATCTCTCGCCTTCTT 83
|||| | |||| |||||| | ||||| ||| |||||||| || ||||||||| ||||||
Sbjct 2 TTACGAGTTCTAAGATCT--A-ATGGAGACCCATTTCCTAATTCTATCTCTCGTCTTCTT 58
Query 84 CCTTTTCATTTCTGTTAAACTTTTGTTTGGTAAACGGCTTAGCAAGTTTAACCTACCACC 143
| ||| ||||||| ||| |||||| ||||||||||||| ||||||||||||||||||||
Sbjct 59 CGTTTGCATTTCTCTTACACTTTTTTTTGGTAAACGGCAAAGCAAGTTTAACCTACCACC 118
Query 144 AAGTCCGGCTAGGCCCCTGCCGTTGATTGGACACCTTCACCTCCTGAA-ACTCCCGCTTC 202
|||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 119 AAGTCCGGCTAGGCCCCTGCCGTTGATTGGACACCTTCACCTCCTGAAGA-TGCCGCTTC 177
Query 203 ACCGCACATTCCTCTCTTTCTCTCAATCCTTAGGTGGCGCCCCAATTTTCTGCCTCCGCC 262
||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||
Sbjct 178 ACCGCACATTCCTCTCTTTCTCTCAATCCCTAGGTGACGCTCCAATTTTCTGCCTCCGCC 237
Query 263 TCGGAAACCGTCTCACGGTTGTAGTCTCTTCATACTCCATCGCTGAAGAATGTTTTACAA 322
||||||||||||||| |||| | |||||||| |||||||||||||||||||| |||||||
Sbjct 238 TCGGAAACCGTCTCATGGTTATTGTCTCTTCCTACTCCATCGCTGAAGAATGCTTTACAA 297
Query 323 AAAACGACATTGTTTTCGCCAATAGGCCAGAGTTAATTCTCGGGAAACATATTGAGTACA 382
|||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 298 AAAACGACATTGTTTTAGCCAATAGGCCAGAGTTCATTGTCGGGAAACATATTGAGTACA 357
Query 383 ACTCCACCACTATGACTAGTGCGCCTTATGGTGACCACTGGCGAAACTTGCGCCGCAT-T 441
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
Sbjct 358 ACTCCACCACTATGACAAGTGCGCCTTATGGTGACCACTGGCGAAACCTGCGCCGCATCT 417
Query 442 GCTACCCTGGAGATCTTCGCATCACATAAGCTCAACGGCTTCTTATCTGTCCGTAAGGAT 501
|| |||||||||||||| | ||||| | |||||| ||||| ||||||||||||||||||
Sbjct 418 GC-ACCCTGGAGATCTTTTCGTCACACAGGCTCAATGGCTTTTTATCTGTCCGTAAGGAT 476
Query 502 GAGATCCGTCAGTTGCTACTACGTCTCTCCAAAAACTCGAGACATGGGTTTGCGAAGGTG 561
|||||||| || ||| ||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 477 GAGATCCGACACTTGTTACTACGTCTCTCCAAAAACTCGCGACATGGGTTTGCCAAGGTG 536
Query 562 GAGATGAGACATT-TGCTTTTTGAGTTGACTATCAATAACGTTTTTAGAATGGTAGCCGG 620
|||||| || | | || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 537 GAGATGCGA-AGTCTGTTTTTTGAGTTGACTATCAATAACATTTTTAGAATGGTAGCCGG 595
Query 621 GAAACGATTTTATGGTGAGGGCACAGAGCAAGACGAAGTTGCGCAGCAAGTGAGACATCT 680
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 596 GAAGCGATTTTATGGTGAGGGCACAGAGCAAGACGAAGTTGCGCAGCAAGTGAGACAACT 655
Query 681 GATGGACGAGATTGTGACCAGCGCTGGCGCCGGGAATGCAGCCGACTATTTACCAATCAT 740
||| ||||||||| || | ||||||||||| |||||||||||||| ||| |||||||| |
Sbjct 656 GATTGACGAGATTATGTCTAGCGCTGGCGCAGGGAATGCAGCCGATTATATACCAATCTT 715
Query 741 GCGTTGGTTCACAAATTTTGAGAAACGCGTCAAGAATTTAGCGATTCGTATCGATAAGTT 800
||||||| |||||||||||||||||| | ||||||| ||||||| ||| ||||||||||
Sbjct 716 GCGTTGGATCACAAATTTTGAGAAACACATCAAGAAGTTAGCGAGTCGGCTCGATAAGTT 775
Query 801 TTTGCAGAGTCTTGTGGATGAGAAACGTGCGGATAAAGAAAAGGGTACCACTATGATAGA 860
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 776 TTTGCAGAGTCTGGTGGATGAGAAACGTGCGGAGAAAGAAAAGGGTACCACTATGATAGA 835
Query 861 TCACTTGCTTTCTCTCCAAGAATCTCAGCCTGATTACTATACAGATGTCACTCTTAAAGG 920
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 836 TCACTTGCTTTCTCTCCAAGAAACTCAGCCTGATTATTATACAGATGTCACTCTTAAAGG 895
Query 921 AATTATAATTGTAATGATAATT-GCTGGATCTGAAACAATAGCATGGACTTTAGAATGGG 979
||| ||| |||| |||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct 896 AATAATACTTGTTATGATA-TTCGCTGGATCTGAAACAATAGCGTGGACTTTAGAATGGG 954
Query 980 CGATGCTGAATGTGTTGAACCATCCAGAAGTATTAAAGAAAGCTAGGACCGAAATCGATA 1039
||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 955 CGATGTTGAATTTGTTGAACCATCCAGAAGTGTTAAAGAAAGCTAGGACCGAAATCAATA 1014
Query 1040 CGAAAATCGGTTTTGACCGGTTAATGGATGAAG-CTGATACTAAAAATCTGCCTTATCTC 1098
||| ||||||||||||||||||||| ||||| | | ||||||| |||||| |||||||||
Sbjct 1015 CGATAATCGGTTTTGACCGGTTAATAGATGA-GTCGGATACTATAAATCTTCCTTATCTC 1073
Query 1099 CAATGGATTGTGTTGGAGACCTTACGTCTTCACCCGGCAGCTCCAACAAATGTTCCACAT 1158
||||||||||||||||||||| |||||||| |||||| |||||| ||| || |||||||
Sbjct 1074 CAATGGATTGTGTTGGAGACCCTACGTCTTTACCCGGTAGCTCCTACACTTGATCCACAT 1133
Query 1159 A-GTACGTCAGAGGATTGCATGTTGGCAGGATATGATGTTCCACGTGGTTCGATGTTATT 1217
| | ||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1134 ATG-ACGTCAGAGGATTGCATGTTGGCAGGATACGACGTTCCACGTGGTTCGATGTTATT 1192
Query 1218 GGTGAACATATGGTCCATGCATAGAGACCCGTCTATATGGGAAGACCCAGAAATGTTCAA 1277
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1193 GGTGAACATATGGGCCATGCATAGAGACCCGTCTATATGGGAAGACCCCGAAATGTTCAA 1252
Query 1278 GCCAGAGAGGTTCAAAAATGAAAAGCTAAATCAAAAGTTGTTGTCGTTTGGGATGGGACG 1337
||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1253 GCCAGAGAGGTTCGTAAATGAAAAGCTTAATCAAAAGTTGTTGTCGTTTGGGATTGGACG 1312
Query 1338 ACGAGCCTGTCCCGGG-TATGGCCTAGCTCATCGGGTAGTGAGCTTGACTCTTGGATCGA 1396
|||||| ||||||||| | |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1313 ACGAGCTTGTCCCGGGGT-TGGCCTAGCTCATCGGGTAGTGAGCTTGGCTCTTGGATCGA 1371
Query 1397 TGGTTCAGTGTTTCGAATGGCAGAGAATTGGACAAGAATATGTTGACAATAGTGAAGACA 1456
||||||||||||| || ||||||||||||||| ||||||||||||||| ||| ||||| |
Sbjct 1372 TGGTTCAGTGTTTTGAGTGGCAGAGAATTGGAGAAGAATATGTTGACAGTAGAGAAGA-A 1430
Query 1457 AAACTGTGGTC-TTGATGCGTCCTACGACACCGTTGCTAGCCATGTGTAAAGCTCGTCCC 1515
| || || ||||||||| || |||||||||||||||| |||||||||||||| |||
Sbjct 1431 CC-CA-TG-TCCTTGATGCGTACTGCGACACCGTTGCTAGCTATGTGTAAAGCTCGACCC 1487
Query 1516 ATTGT 1520
|||||
Sbjct 1488 ATTGT 1492
> Ahg899629 jgi|Araly1|899629|Al_scaffold_0004_279
Length=1560
Score = 1893 bits (1025), Expect = 0.0
Identities = 1390/1562 (89%), Gaps = 42/1562 (3%)
Strand=Plus/Plus
Query 5 ATGTTTCAATTCAACACATTTACAAATTCTTAGATCTAAATATGGAAACCT-ATTTCCTA 63
||||||||||||||||||||||||| ||||||||||| | ||||||| || ||||||||
Sbjct 23 ATGTTTCAATTCAACACATTTACAAGTTCTTAGATCT--A-ATGGAAA-CTCATTTCCTA 78
Query 64 CTTTTATCTCTCGCCTTCTTCCTTTTCATTTCTGTTAAACTTTTGTTTGGTAAACGGCTT 123
|||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| |
Sbjct 79 ATTTTATCTCTCGCCTTCTTCTTTTTCATTTCTCTTAAACTTTTGTTTGGTAAAAGGCAT 138
Query 124 AGCAAGTTTAACCTACCACCAAGTCCGGCTAGGCCCCTGCCGTTGATTGGACACCTTCAC 183
| |||||||||||||||||||||||| |||||||| || || || |||||||||||||||
Sbjct 139 AACAAGTTTAACCTACCACCAAGTCCAGCTAGGCCACTTCCATTTATTGGACACCTTCAC 198
Query 184 CTCCTGAAA-CTCCCGCTTCACCGCACATTCCTCTCTTTCTCTCAATCCTTAGGTGGCGC 242
||||| ||| ||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 199 CTCCT-AAAGAAGCCGCTTCACCGTACATTCCTCTCTTTCTCTCAATCCCTAGGTGGCGC 257
Query 243 CCCAATTTTCTGCC-TCCGCCTCGGAAACCGTCTCACGGTTGTAGTCTCTTCATACTCCA 301
||| ||||||| || |||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 258 CCCGATTTTCT-CCATCCGCCTCGGAAACCGTCTCACGGTTGTTGTCTCCTCCTACTCCA 316
Query 302 TCGCTGAAGAATGTTTTACAAAAAACGACATTGTTTTCGCCAATAGGCCAGAGTTAATTC 361
||||||||||||| ||||||||||||||||||||||| |||||||||||| |||| ||||
Sbjct 317 TCGCTGAAGAATGCTTTACAAAAAACGACATTGTTTTGGCCAATAGGCCAAAGTTCATTC 376
Query 362 TCGGGAAACATATTGAGTACAACTCCACCACTATGACTAGTGCGCCTTATGGTGACCACT 421
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||
Sbjct 377 TCGGGAAACATATTGAGTACAACTTCACCACTATGACAAGTGCGCCTTATGGTGACTACT 436
Query 422 GGCGAAACTTGCGCCGCATTGCTACCCTGGAGATCTTCGCATCACATAAGCTCAACGGCT 481
|||||||| ||||||| || | |||||| ||||| || | ||||| |||||||| ||||
Sbjct 437 GGCGAAACCTGCGCCGTATCGGTACCCTCGAGATATTTTCTTCACACAAGCTCAATGGCT 496
Query 482 TCTTATCTGTCCGTAAGGATGAGATCCGTCAGTTGCTACTACGT-CTCTCCAAAAACTCG 540
| |||||| ||||||||||||||||||| || ||| || | | | || || |||||||||
Sbjct 497 TTTTATCTATCCGTAAGGATGAGATCCGACACTTGTTATTGC-TCCTATCAAAAAACTCG 555
Query 541 -AGACATGGGTTTGCGAAGGTGGAGATGAGACATTTGCTTTT-TGAGTTGACTATCAATA 598
| |||||||||||||||||||||||||||||| ||| |||| ||| ||||||||||| |
Sbjct 556 CA-ACATGGGTTTGCGAAGGTGGAGATGAGACAATTG-TTTTATGATTTGACTATCAACA 613
Query 599 ACGTTTTTAGAATGGTAGCCGGGAAACGATTTTATGGTGAGGGCACAGAGCAAGACGAAG 658
|| || || ||||| ||||||||||||||| |||||| ||||| ||||||||||| || |
Sbjct 614 ACATTCTTCGAATGATAGCCGGGAAACGATATTATGGAGAGGGAACAGAGCAAGATGACG 673
Query 659 TTGCGCAGCAAGTGAGACA-TCTGATGGACGAGATTG-TGACCAGCGCTGGCGCCGGGAA 716
|||||| || |||||| || | |||| |||||||||| | | ||| |||||||| |||||
Sbjct 674 TTGCGCGGCGAGTGAGCCAGT-TGATTGACGAGATTGTTTA-CAGGGCTGGCGCTGGGAA 731
Query 717 TGCAGCCGACTATTTACCAATCATGCGTTGG-TTCACAAATTTTGAGAAACGCGTCAAGA 775
||||||||| |||||||| || |||||||| || ||| ||||||||||| | ||||||
Sbjct 732 TGCAGCCGATTATTTACCGATTTTGCGTTGGATT-ACAGATTTTGAGAAAGGGGTCAAGG 790
Query 776 ATTTAGCGATTCGTA-TCGATAAGTTTTTGCAGAGTCTTGTGGATGAGAAACGTGCGGAT 834
| ||||||| ||| | | ||| |||||||||||||||| || ||||||||||||| ||||
Sbjct 791 AGTTAGCGAGTCG-AGTTGATGAGTTTTTGCAGAGTCTGGTCGATGAGAAACGTGTGGAT 849
Query 835 AAAGAAAAGGGTACCACTATGATAGATCACTTGC-TTTCTCTCCAAGA-ATCTCAGCCTG 892
||||||||||||| ||||||||| |||||||| | |||| |||||||| | |||||||||
Sbjct 850 AAAGAAAAGGGTAACACTATGATGGATCACTTACTTTTC-CTCCAAGAGA-CTCAGCCTG 907
Query 893 ATTACTATACAGATGTCACTCTTAAAGGAATTATAATTGTAATGATAATTGCTGG-ATCT 951
||||||||||||||||||||||||||||||| |||||||| |||||| |||| || | ||
Sbjct 908 ATTACTATACAGATGTCACTCTTAAAGGAATCATAATTGTTATGATACTTGCCGGGA-CT 966
Query 952 GAAACAATAGCATGGA-CTTTAGAATGGGCGATGCTGAATGTGTTGAACCATCCAGAAGT 1010
|||||| ||||| ||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 967 GAAACATTAGCA-GGAACTTTAGAATGGGCGATGCTGAATTTGTTGAACCATCCAGAAGT 1025
Query 1011 ATTAAAGAAAGCTAGGACCGAAATCGATACGAAAATCGGTTTTGACCGGTTAATGGATGA 1070
| || ||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1026 ACTAGAGAAAGCGAGGACCGAAATCGATACCAAAATCGGTTTTGACCGGTTAATAGATGA 1085
Query 1071 AGCTGATACTAAAAATCTGCCTTATCTCCAATGGATTGTGTTGGAGACCTTACGTCTTCA 1130
||| |||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1086 AGCCGATACTAAAAATCTCCCTTATCTCCAATGGATAGTGTTGGAGACCCTACGTCTTCA 1145
Query 1131 CCCGGCAGCTCCAACAAATGTTCCACATA-GTACGTCAGAGGATTGCATGTTGGCAGGAT 1189
|| ||||||||||||||||||||||||| | |||||||| ||||| |||||||||||||
Sbjct 1146 TCCAGCAGCTCCAACAAATGTTCCACATATG-ACGTCAGATGATTGTATGTTGGCAGGAT 1204
Query 1190 ATGATGTTCCACGTGGTTCGATGTTATTGGTGAACATATGGTCCATGCATAGAGACCCGT 1249
| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1205 ACGACGTTCCACGTGGTTCGATGTTATTGGTGAACATATGGGCCATGCATAGAGACCCGT 1264
Query 1250 CTA-TATGGGAAGACCCAGAAATGTTCAAGCCAGAGAGGTTCAAAAATGAAAAGCTAAAT 1308
| | ||||||||||||| |||||||||||||||||||||||| ||||| ||||||| |||
Sbjct 1265 C-AGTATGGGAAGACCCCGAAATGTTCAAGCCAGAGAGGTTCGAAAATCAAAAGCTTAAT 1323
Query 1309 CAAAAGTTGTTGTCGTTTGGGATGGGACGACGAGCCTGTCCCGGG-TATGGCCTAGCTCA 1367
||||||||||||||||||||||| |||||| |||| ||||| ||| | ||||||||||||
Sbjct 1324 CAAAAGTTGTTGTCGTTTGGGATTGGACGAAGAGCTTGTCCTGGGGT-TGGCCTAGCTCA 1382
Query 1368 TCGGGTAGTGAGCTTGACTCTTGGATCGATGGTTCAGTGTTTCGAATGGCAGAGAATTGG 1427
|||| || |||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1383 TCGGTTACTGAGCTTGGCTCTTGGATCGATGGTTCAGTGTTTTGAATGGCAGAGAATTGG 1442
Query 1428 ACAAGAATATGTTGACAATAGTGAAGACAAAACTG-TGGTCTTGATGCGTCCTACGACAC 1486
| ||||||||||||||| || ||||| | || ||| | ||||||||||| ||||||
Sbjct 1443 AGAAGAATATGTTGACACGAGAGAAGA-A---CTTATGGCCATGATGCGTCCTGCGACAC 1498
Query 1487 CGTTGCTAGCCATGTGTAAAGCTCGTCCCATTGTCCATGAGATTCTTGATGCTTTTGCTT 1546
| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1499 CATTGCTAGCCATGTGTAAAGCTCGTCCCATTGTCCATAAGATTCTTAATGCTTTTGCTT 1558
Query 1547 GA 1548
||
Sbjct 1559 GA 1560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57973352890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5