BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23230.1
Length=1821
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481194 jgi|Araly1|481194|fgenesh2_kg.4__254__AT2G23230.1 2564 0.0
> Ahg481194 jgi|Araly1|481194|fgenesh2_kg.4__254__AT2G23230.1
Length=1824
Score = 2564 bits (1388), Expect = 0.0
Identities = 1677/1811 (93%), Gaps = 42/1811 (2%)
Strand=Plus/Plus
Query 1 ATGAAAACCTTGA-CATTTTTTGGACCAAAATATGGAACTCAAGTCTCTCTTCTTTCTCC 59
||| ||||||||| || ||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGAAACCTTGACCA-TTTTTGGACAAAAATGTGGAACTCAAGTCTCTCTTCTTTCTCC 59
Query 60 GAA-TGTGGTGAGCAAACTCTCTCGCTTTCCACTGACATCATTTGCTCGTAAGCCTACAA 118
|| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 60 -AAGTGCGGTGAGCAAACTCTCTCGCTTTCCACTGACATCATTTGCTCGTAAACCTACAA 118
Query 119 AGCCGGTATGTGTGAAGACTACGGATTGTGACCTTGTTGAAAGTCAGCGTACGTTTAACA 178
||| ||| ||| |||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 119 AGCAGGTTTGTTTGAAGACTACGGATTGTGACCTTGATGAAAGTAAGCGTACGTTTAACA 178
Query 179 AGTTTCCACGTTCGGACTGGGGTGATCATTTCCTTCGTCTTCCCTTCAATGTCTCAGATA 238
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 179 AGTTTCCACGTTCTGACTGGGGTGATCATTTCCTTCGTCTTCCCATCAATGTCTCAGATA 238
Query 239 TGGATATGCTTACAATAGAGATGAACGCACTAAAGTCTACAATAAGGAAGATGCTTATGT 298
|||||| |||||||| ||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 239 TGGATACGCTTACAAGAGAGATGAACGCACTAAAGCCTACAATAAGGAAGATGCTCATGT 298
Query 299 ATTCACAAGACGTGGAGGAGACAAAGGAGAGAATTCTTATAATATATTTGCTGGTTGCAC 358
|||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| ||||
Sbjct 299 ATTCACAAGACGTGGAGGAGACAAAGAAGAGAATTCTTCTAATCTATTTGCTGGTCGCAC 358
Query 359 TTGGTATGGCATACCACTTCGAGGATGAGATAGATGATAATCTGAAACACGGCTTCGAAA 418
||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 359 TTGGTGTGGCATACCACTTTGAGGATGAGATAGATGATAATCTGAAACACAGCTTCGAAA 418
Query 419 ATATAGAGACCACTATGGCCGGTGAAAATGACTTGTCCACGGTTTCGGTCATGTTTTGGG 478
| |||||||||| |||||||||||||| ||||||||| || |||||||||||||||||||
Sbjct 419 AGATAGAGACCATTATGGCCGGTGAAATTGACTTGTCGACAGTTTCGGTCATGTTTTGGG 478
Query 479 -TTTCAGGACATATGGATATAACTTGTCTTCCGGTAAGGAATATGTTTAGGAGATTTAAA 537
||| ||||||||||||||||||||||||| | | | || |||||||||||||||||
Sbjct 479 TTTTTAGGACATATGGATATAACTTGTCTT-C--T---G-ATGTGTTTAGGAGATTTAAA 531
Query 538 GGGGAGGATGGAAAGTTTGAAGAATGTCATACAA-AAGATGTCAAAGGTCTGCTAAGTTT 596
||| | ||||| ||||||||| |||||| || || ||||||||||||||||||||| |||
Sbjct 532 GGGAAAGATGGGAAGTTTGAAAAATGTCTTA-AAGAAGATGTCAAAGGTCTGCTAATTTT 590
Query 597 GTATGAAGCCGCACAATTGGGTACAAGCACTGAAGATATTTTGGACGAAGCGATGAGTTT 656
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 591 GTATGAAGCCACACAATTGGGTACAAGCACTGAGGATATTTTGGACGAAGCGATGAGCTT 650
Query 657 CTCGTCGAGTCACTTGGAGTG--T-TTAGCAGGTGGAACGTGCCCGCCTCATATCTCAAG 713
| ||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 651 CGCGTCGAGCCACTTGGAGTGTTTATTAGCAGGTGGAACGTGCCCGCCTCATATCTCAAG 710
Query 714 GCTTATACAAAATG-AGCTTTACATGCCTCAGCACCACAA-TGCTGAAATATTATTCGCA 771
|||||||| ||||| | ||||||||||||||||||||||| || ||||||||||||||||
Sbjct 711 GCTTATACGAAATGCA-CTTTACATGCCTCAGCACCACAATTG-TGAAATATTATTCGCA 768
Query 772 AGCGAATACATTTCCTTCTATAAACAAGAAGATGTTCACAACAAAGTCCTACTCGAGTTC 831
||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 769 AGCGAATACATTTGGTTCTATGAACAAGAAGATGTTCACAACAAAGTCCTACTTGAGTTC 828
Query 832 GCCAAGCTCAATTTCAAGTTCCTTCAACTCCATTGGATTCACGAGCTGAAAATTCTCACC 891
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 829 GCCAAGCTCAATTTCAAGTTCCTTCAACTCCATTGGATTCATGAGCTGAAAATTCTCACC 888
Query 892 AAATGGTGGAATGATCAAGATCTTTTATCTAAGCTCCCACCTTACTTTAGAGACAGAATG 951
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 889 AAATGGTGGAATGACCAAGATCTTTTATCTAAGCTCCCACCTTACTTTAGAGACAGACTG 948
Query 952 GTGGAGTGCCATTTATATGCAGTGATTTAT-TATTTCGAGCCACAATATTCATTTGGCAG 1010
||||||||||||||||||| ||||||| || |||||||||||| ||||||||||||||||
Sbjct 949 GTGGAGTGCCATTTATATGGAGTGATT-ATGTATTTCGAGCCAAAATATTCATTTGGCAG 1007
Query 1011 AATCATGTTGGCTAAGTTATTGGTACTCTTGACCGTTGTCGATGATACGTGCGACAGATA 1070
|||||| |||||||||||| |||| |||||||||||||||||||| ||||| || |||||
Sbjct 1008 AATCATATTGGCTAAGTTACTGGTGCTCTTGACCGTTGTCGATGACACGTGTGATAGATA 1067
Query 1071 TGGTTCTGTTCCTGAGGTTGCAAAGCTTCTTGATTGTGTCGAAAGATGGGATCCAGAACT 1130
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1068 TGGTTCTGTTCCTGAGGTTGCAAAGCTTCTTGATTGCGTCGAAAGATGGGATCCAGATCT 1127
Query 1131 TGGGGAGAGTCTGCCAGATTATC-TGAAAACCGTCTTCAAGTTTACTTTGGATGTTTTTG 1189
|| |||||||||||||||||| | |||||||||||||||||||||||||||| |||||||
Sbjct 1128 TGTGGAGAGTCTGCCAGATTA-CATGAAAACCGTCTTCAAGTTTACTTTGGACGTTTTTG 1186
Query 1190 AAGATTGTGAACGAGCGGGGAAGAGTGAAGAAGGACTA-AGCTTCAATGTCGATGGTGCA 1248
||||||||||||||||||||| | |||||||||||| | ||||||||||| || ||||||
Sbjct 1187 AAGATTGTGAACGAGCGGGGATGTGTGAAGAAGGAC-AGAGCTTCAATGTGGAAGGTGCA 1245
Query 1249 TTAGCCGAG--C--GA-AC-CCA-C---C---T-TAA-CTTTGCCGAGTGGGCAGCGGCA 1293
||||| ||| | || || ||| | | | | | |||||| |||||||||||||||
Sbjct 1246 TTAGCAGAGTTCAAGATACTCCAGCGAACCCATCTTAGCTTTGCTGAGTGGGCAGCGGCA 1305
Query 1294 GAAAAAGTGCCAACAGTTGAAGAGTATTTGGAGGTTGGGGGCGTAGCGGTCACAATGTAT 1353
||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1306 GAAAAGGTGCCAACAGTTGAAGAGTATTTGGAGGTTGGGGGCGTGGGGGTCACAATGTAT 1365
Query 1354 GCAACTATAGCATTGGGACTTCTCGGGTTAGGACCGAAGGCTAGGGAACACGGTTATGAG 1413
||||||||||||||||| |||||||||| ||||||| |||||||||||| |||||||||
Sbjct 1366 GCAACTATAGCATTGGGTTTTCTCGGGTTGGGACCGAGGGCTAGGGAACAAGGTTATGAG 1425
Query 1414 TGGCTAAAATCTAGACCAAAACTCGTTCACGATTTGGCAACAAAAGGTCGTCTGATGAAT 1473
|||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||
Sbjct 1426 TGGCTAAAATCTAGACCAAAACTCCTTCATGATTTGGCAACAAAGGGTCGTCTGATGAAT 1485
Query 1474 GACATGGGAGGCTTCAAGGATGACATTGGTCGAGGTTTTCTCGCAAACGTAGTCAACTAT 1533
||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||
Sbjct 1486 GACATGGGAGGCTTCAAGGATGACATTGGAAGAGGTTTTATCGCAAACGCAGTCAACTAT 1545
Query 1534 TATATGAAGGAATATGGAACTACCGAAGAGGAAACATATAAGGAGTTTCATAAAATAGTT 1593
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 TATATGAAGGAATATGGAGCTACCGAAGAGGAAACATATAAGGAGTTTCATAAAATAGTT 1605
Query 1594 AGAGACCTCGAGAAGTCGGTGAACTCGGAGTTCTTGAAGATAAATAAAGGAGTGCCTCGC 1653
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1606 AGAGACCTGGAGAAGTCGGTGAACTCGGAGTTCTTGAAGATAAATAAAGGAGTGCCTCGC 1665
Query 1654 GAAATCCTATCTCGGGCCCTTAATTGTGGGAAAATGATCGATGTTACTTACAGATCCGGT 1713
|| |||||||| || ||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1666 GAGATCCTATCGCGAGCCATTAATTGTGGGAAAATGATCGATGTTACCTACAGATCCGGT 1725
Query 1714 GACGGGTACACTCGGCCCAGAGGAAAATTCACAGAGTATGTCGAATCATTGTTTGTCGAG 1773
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1726 GACGGGTACACTCGGCCCAAAGGAAAATTCACAGAGTATGTCGAATCATTGTTTGTCGAC 1785
Query 1774 CACATGGATGC 1784
|||||||||||
Sbjct 1786 CACATGGATGC 1796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68371989775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5