BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G23240.1 Length=398 Score E Sequences producing significant alignments: (Bits) Value Ahg320149 jgi|Araly1|320149|fgenesh1_pm.C_scaffold_4000206 427 3e-119 > Ahg320149 jgi|Araly1|320149|fgenesh1_pm.C_scaffold_4000206 Length=258 Score = 427 bits (231), Expect = 3e-119 Identities = 250/259 (97%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 1 ATGGCAGACACAGGCAAAGGAAG-TGCAAGCGCTAGCTGCAACGATCGTTGTGGCTGCCC 59 ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCAGACACAGGCAAAGGAAGCT-CAAGCGCTAGCTGCAACGATCGTTGTGGCTGCCC 59 Query 60 TTCTCCATGTCCCGGTGGCGAATCTTGCAGGTGCAAGATGATGAGCGAAGCATCTGGTGG 119 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 60 TTCTCCATGTCCCGGTGGTGAATCTTGCAGGTGCAAGATGATGAGCGAAGCATCTGGTGG 119 Query 120 GGATCAAGAGCACAACACGTGTCCATGTGGGGAGCACTGTGGCTGTAACCCTTGCAACTG 179 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 120 GGATCAAGAGCATAACACGTGTCCGTGTGGGGAGCACTGTGGCTGTAACCCTTGCAACTG 179 Query 180 CCCCAAGACTCAAACTCAAACCTCTGCTAAGGGTTGCACTTGTGGTGAGGGCTGCACCTG 239 |||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||| Sbjct 180 TCCCAAGACCCAAACTCAAACCTCTACTAAGGGTTGCACTTGTGGTGAGGGATGCACCTG 239 Query 240 TGCCACTTGCGCTGCTTAG 258 ||||||||||||||||||| Sbjct 240 TGCCACTTGCGCTGCTTAG 258 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14270190286 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5