BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23240.1
Length=398
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320149 jgi|Araly1|320149|fgenesh1_pm.C_scaffold_4000206 427 3e-119
> Ahg320149 jgi|Araly1|320149|fgenesh1_pm.C_scaffold_4000206
Length=258
Score = 427 bits (231), Expect = 3e-119
Identities = 250/259 (97%), Gaps = 2/259 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGACACAGGCAAAGGAAG-TGCAAGCGCTAGCTGCAACGATCGTTGTGGCTGCCC 59
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAGACACAGGCAAAGGAAGCT-CAAGCGCTAGCTGCAACGATCGTTGTGGCTGCCC 59
Query 60 TTCTCCATGTCCCGGTGGCGAATCTTGCAGGTGCAAGATGATGAGCGAAGCATCTGGTGG 119
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTCTCCATGTCCCGGTGGTGAATCTTGCAGGTGCAAGATGATGAGCGAAGCATCTGGTGG 119
Query 120 GGATCAAGAGCACAACACGTGTCCATGTGGGGAGCACTGTGGCTGTAACCCTTGCAACTG 179
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 120 GGATCAAGAGCATAACACGTGTCCGTGTGGGGAGCACTGTGGCTGTAACCCTTGCAACTG 179
Query 180 CCCCAAGACTCAAACTCAAACCTCTGCTAAGGGTTGCACTTGTGGTGAGGGCTGCACCTG 239
|||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 180 TCCCAAGACCCAAACTCAAACCTCTACTAAGGGTTGCACTTGTGGTGAGGGATGCACCTG 239
Query 240 TGCCACTTGCGCTGCTTAG 258
|||||||||||||||||||
Sbjct 240 TGCCACTTGCGCTGCTTAG 258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14270190286
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5