BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23250.1
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932318 jgi|Araly1|932318|scaffold_400306.1 1930 0.0
Ahg481198 jgi|Araly1|481198|fgenesh2_kg.4__258__AT2G23260.1 1247 0.0
> Ahg932318 jgi|Araly1|932318|scaffold_400306.1
Length=1377
Score = 1930 bits (1045), Expect = 0.0
Identities = 1242/1335 (93%), Gaps = 21/1335 (2%)
Strand=Plus/Plus
Query 1 ATGGTAGCATTAGCATTCCAAGGTCATCTCAATCCAATGCTCAAATTCGCAAAACATCTC 60
|||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct 26 ATGGTAGCATTAGCATTCCAAGGTCACCTAAATCCAATGCTCAAATTCGCCAAACATCTC 85
Query 61 GCACGAACCAATCTACACTTCACTCTCGCCACCACTGAGCAAGCCCGTGACCTCCTCTCT 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 86 GCACGAACCAACCTACACTTCACTCTCGCCACCACTGAGCAAGCCCGTGACCTCCTCTCT 145
Query 121 TCCACCGCTGACGAACCTCATAGACCGGTGGACCTCGCTTTCTTCTCAGACGGTCTACCT 180
||||| || |||||||| |||||||||||||||||||| |||||| | |||||||| |||
Sbjct 146 TCCACTGCCGACGAACCCCATAGACCGGTGGACCTCGCCTTCTTCCCCGACGGTCTGCCT 205
Query 181 AAAGACGATCCAAGAGATCCCGACACTCTCGCAAAGTCATTGAAAAAAGATGGAGCCAAG 240
||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 206 AAAGACGATCCAAGAGACCCCGACACTCTCGCAAAGTCATTGAGAAAAGTTGGAGCCAAG 265
Query 241 AACTTGTCAAAAATCATCGAAGAAAAGAGATTTGATTGCATCATCTCTGTGCCTTTTACT 300
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 266 AACTTGTCAAAAATCATCGAAGAAAAGAGATTCGATTGCATTGTCTCTGTGCCTTTTAC- 324
Query 301 CCC-TGGGTTCCAGCTGTTGCAGCTGCACATAACATTCCTTGTGCAATCCTCTGGATCCA 359
||| ||||||||||||||||| || || ||||| ||||||||||||||||||||||||||
Sbjct 325 CCCATGGGTTCCAGCTGTTGCCGCGGCTCATAATATTCCTTGTGCAATCCTCTGGATCCA 384
Query 360 AGCTTGTGGAGCTTTTTCTGTTTATTACCGTTATTACATGAAGACAAATCCTTTCCCCGA 419
||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 385 AGCTTGTGGAGCTTTCTCCGTTTATTACCGTTACTACATGAAGACAAATCCTTTCCCCGA 444
Query 420 CCTTGAAGATCTGAATCAAACAGTGGAGTTACCAGCTTTACCATTGTTGGAAGTCCGAGA 479
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 445 CCTTGAAGTTCTGAATCAAACAGTGGAGTTACCAGCTTTACCACTGTTGGAAGTCCGAGA 504
Query 480 TCTCCCGTCATTGATGTTACCTTCTCAAGGAGCTAATGTCAATACCCTAATGGCGGAATT 539
|||||| |||||||||||||||||||| || ||| | |||||||| ||||||||||||||
Sbjct 505 TCTCCCATCATTGATGTTACCTTCTCATGGCGCTCAGGTCAATACGCTAATGGCGGAATT 564
Query 540 TGCAGATTGTTTGAAAGATGTGAAATGGGTTTTGGTTAACTCGTTTTACGAACTCGAATC 599
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 565 CGCAGATTGCTTGAAAGATGTGCAATGGGTTTTGGTTAACTCGTTTTACGAACTCGAATC 624
Query 600 AGAGATCATCGAGTCTATGTCTGATTTAAAACCTATAATCCCAATTGGTCCTCTTGTTTC 659
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 AGAGATAATCGAGTCTATGTCTGATTTAAAACCTATAATCCCAATTGGTCCTCTTGTTTC 684
Query 660 TCCATTCCTGTTGGGAAATGATGAAGAAAAAACCC----T--A---------GATATGTG 704
|||||| |||||||||| ||| ||||| ||||||| | | ||||||||
Sbjct 685 TCCATTTCTGTTGGGAATTGAAGAAGACAAAACCCAAGATGGAAAAAACCTAGATATGTG 744
Query 705 GAAAGT-TGATGATTATTGTATGGAGTGGCTTGACAAGCAAGCTAGGTCTTCAGTTGTTT 763
|||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 GAAA-TATGATGATTTTTGTATGGAGTGGCTTGACAAGCAAGCTAGGTCTTCAGTTGTTT 803
Query 764 ACATATCTTTCGGAAGCATACTCAAATCATTGGAGAATCAAGTTGAGACCATAGCAACGG 823
|||||||||||||||||||||||||||||| |||||||||||| |||| |||||||| ||
Sbjct 804 ACATATCTTTCGGAAGCATACTCAAATCATCGGAGAATCAAGTCGAGATCATAGCAAAGG 863
Query 824 CATTAAAAAACAGAGGAGTTCCATTTCTTTGGGTGAT-ACGGCCGAAGGAGAAAGGCGAA 882
|||| ||||||||||||||| |||||||||||||||| | ||||||||||||||||||||
Sbjct 864 CATTGAAAAACAGAGGAGTTTCATTTCTTTGGGTGATTA-GGCCGAAGGAGAAAGGCGAA 922
Query 883 AACGTCCAGGTTTTGCAGGAGATGGTTAAAGAAGGTAAAGGGGTTGTAACTGAATGGGGT 942
|| ||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 923 AATGTCCAAGTTTTGCAAGAGATGGTTAAAGAAGGTAAAGGGGTTGTAATTGAATGGGGT 982
Query 943 CAACAAGAAAAGATATTGAGCCACATGGCGATTTCTTGCTTCATCACGCATTGTGGATGG 1002
|||||||| ||||||||||||||||||||||| ||||||||| ||| |||||||||||||
Sbjct 983 CAACAAGAGAAGATATTGAGCCACATGGCGATCTCTTGCTTCGTCATGCATTGTGGATGG 1042
Query 1003 AACTCGACGATCGAGACGGTGGTGACTGGTGTTCCCGTGGTGGCGTATCCGACTTGGATA 1062
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1043 AACTCGACGATCGAGACGGTGGTGACTGGTGTTCCGGTGGTGGCGTATCCGACTTGGATA 1102
Query 1063 GATCAGCCGCTTGATGCGAGACTGCTTGTGGATGTGTTTGGAATCGGAGTAAGGATGAAG 1122
||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1103 GATCAGCCGCTTGATGCCAGATTGCTTGTGGATGTGTTTGGAATAGGAGTAAGGATGAAG 1162
Query 1123 AACGACGCTATCGATGGAGAGCTTAAGGTTGCAGAGGTGGAGAGATGCATTGAGGCCGTG 1182
||||| ||| | || |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1163 AACGATGCTGTTGACGGAGAGCTTAAGGTTGAAGAGGTGGAGAGATGCATTGAGGCCGTG 1222
Query 1183 ACAGAGGGACCTGCCGCCGCGGATATGAGGAGGAGAGCGACGGAGCTGAAGCACGCCGCA 1242
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1223 ACAGAAGGACCTGCCGCCGCGGGCATGAGGAGGAGAGCGACGGAGCTGAAGCACGCCGCA 1282
Query 1243 AGATCGGCGATGTCACCTGGTGGATCTTCCGCTCAGAATTTAGACTCGTTCATTAGTGAT 1302
|||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1283 AGATCGGCGATGGCACCTGGTGGATCTTCGGCTCGGAATTTAGACTCGTTCATTAGTGAT 1342
Query 1303 ATCCCAATCACTTGA 1317
||| ||||||| |||
Sbjct 1343 ATCACAATCACCTGA 1357
> Ahg481198 jgi|Araly1|481198|fgenesh2_kg.4__258__AT2G23260.1
Length=1497
Score = 1247 bits (675), Expect = 0.0
Identities = 1134/1349 (84%), Gaps = 58/1349 (4%)
Strand=Plus/Plus
Query 1 ATGG-TAGCATTAGCATTCCAAGGTCATC-TCAATCCAATGCTCAAATTCGCAAAACA-- 56
|||| || || |||||||||||||||| | ||||||||||||||||| |||| |||||
Sbjct 44 ATGGTTA-CACTAGCATTCCAAGGTCA-CATCAATCCAATGCTCAAACTCGCCAAACATC 101
Query 57 TCTCG----CA-CGAACCAATCTACACTTCACTCTCGCCACCACTGAGCAAGCCCGTGAC 111
||||| || | || || |||||| ||||||||||||| ||| | |||||||||
Sbjct 102 TCTCGTTATCATC-AAAGAACCTACACGTCACTCTCGCCACTGTTGAACCAGCCCGTGAT 160
Query 112 CTCCTCTCTTCCACCGCT-GACGAACCTCATAGACCGGTGGACCTCGCT-TTCTTCTCAG 169
|| | ||| ||||||| | || || ||| ||| ||||||||||||| | |||||||| |
Sbjct 161 CT-C-CTC-TCCACCG-TAGAAAAATCTCGTAGTCCGGTGGACCTCG-TGTTCTTCTCCG 215
Query 170 ACGGTCTACCTAAAGACGATCCAAGAGATCCC-GACACTCTCGCAAAGTCATTGAAAAAA 228
||||||| ||||||||||||||||||| ||| || ||||| ||||||||||| |||
Sbjct 216 ACGGTCTGCCTAAAGACGATCCAAGAG-CCCCTGAAACTCTTTTGAAGTCATTGAATAAA 274
Query 229 GAT-GGAGCCAAGAACTTGTCAAAAATCATCGAAGAAAAGAGAT-TTGATTGCATCATCT 286
| | ||||||||||||||||| ||||||||||||||||||| || | ||| ||||||
Sbjct 275 G-TAGGAGCCAAGAACTTGTCTAAAATCATCGAAGAAAAGATATACT-CTTGTGTCATCT 332
Query 287 CTGT-GCCTTTTACTCCCTGGGTTCCAGCTGTTGCAGCTGCACATAACATTCCTTGTGCA 345
|| | |||||||||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 333 CT-TCGCCTTTTACTCCATGGGTTCCAGCTGTTGCAGCCGCTCATAACATTCCTTGTGCA 391
Query 346 ATCCTCTGGATCCAAGCTTGTGGAGCTTTTTCTGTTTATTACCGTTATTACATGAAGACA 405
||||| ||||| |||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 392 ATCCTTTGGATTCAAGCTTGTGGAGCTTACTCGGTTTATTACCGTTACTACATGAAGACA 451
Query 406 AATC-CTTTCCCCGACCTTGAAGATCTGAATCAAACAGTGGAGTTACCAGCTTTACCATT 464
|| | ||||||| || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 452 AA-CTCTTTCCCTGATCTTGAAGATCTGAATCAAACAGTGGAGTTACCAGCATTACCATT 510
Query 465 GTTGGAAGTCCGAGATCTCCCGTCATTGATGTTACCTTCTCAAGGAGCTAA-TGTCAATA 523
||||||||| |||||||| || || || |||||||||||| || || | | ||||||
Sbjct 511 GTTGGAAGTTCGAGATCTTCCATCGTTTATGTTACCTTCTGGTGGTTCTCACT-TCAATA 569
Query 524 CCCTAATGGCGGAATTTGCAGATTGTTTGAAAG-ATGTGAAATGGGTTTTGGTTAACTCG 582
||||||||||||||||| |||||||||| | |||||||||||||||||||||| |||
Sbjct 570 ATCTAATGGCGGAATTTGCTGATTGTTTGAG-GTATGTGAAATGGGTTTTGGTTAATTCG 628
Query 583 TTTTACGAACTCGAATCAGAGATCATCGAGTCTATGTCTGATTTAAAACCTATAATCCCA 642
|| || ||||||||||||||||| || || || ||| |||||||||||||| |||||||
Sbjct 629 TTCTATGAACTCGAATCAGAGATAATAGAATCAATGGCTGATTTAAAACCTGTAATCCCG 688
Query 643 ATTGGTCCTCTTGTTTCTCCATTCCTGTTGGGAAATGATGAAGAAAAAACCCTAGAT--- 699
||||||||||||||||||||||| ||||||||| |||||| || |||||||||||
Sbjct 689 ATTGGTCCTCTTGTTTCTCCATTTCTGTTGGGAGCTGATGAGGATGAAACCCTAGATGGT 748
Query 700 A------T-G-T--G-G-AAAGT-TGATGATTATTGTATGGAGTGGCTTGACAAGCAAGC 746
| | | | | | ||| | |||||||| |||||||||||||||||||||||||||
Sbjct 749 AAAAACCTAGATTTGTGCAAA-TCTGATGATTGTTGTATGGAGTGGCTTGACAAGCAAGC 807
Query 747 TAGGTCTTCAGTTGTTTACATATCTTTCGGAAGCATACTCAAATCATTGGAGAATCAAGT 806
||||||||| ||||| ||||| |||||||||||||| ||| |||||||||||||||| ||
Sbjct 808 TAGGTCTTCGGTTGTGTACATTTCTTTCGGAAGCATGCTCGAATCATTGGAGAATCAGGT 867
Query 807 TGAGACCATAGC-AACGGCATTAAAAAACAGAGGAGTTCCATTTCTTTGGGTGATACGGC 865
||||||||||| || ||| | || |||| || |||||||||||| ||||||||| |||
Sbjct 868 CGAGACCATAGCGAA-GGCGCTGAAGAACAAAGAAGTTCCATTTCTCTGGGTGATAAGGC 926
Query 866 CGAAGGAGAAAGGCGAAAACGTCCAGGTTTTGCAGGAGATGGTTAAAGAAGGTA-AAGGG 924
| |||||||||| | ||||||| | ||||||||||||||||| |||||||| | ||||
Sbjct 927 CAAAGGAGAAAGCCCAAAACGTTGATGTTTTGCAGGAGATGGTAAAAGAAGG-ACAAGGA 985
Query 925 GTTGTAACT-GAATGGGGTCAACAAGAAAAGATATTGAGCCACATGGCGATTTCTTGCTT 983
||||| || || ||| ||| |||||| | ||| ||||||||| ||||||| ||||| ||
Sbjct 986 GTTGTT-CTCGAGTGGAGTCCACAAGAGAGGATTTTGAGCCACGTGGCGATCTCTTGTTT 1044
Query 984 CATCACGCATTGTGGATGGAACTCGACGATCGAGACGGTGGTGACTGGTGTTCCCGTGGT 1043
||||||||| || || |||||||| || |||||||| |||||| |||||||||| || ||
Sbjct 1045 CATCACGCACTGCGGCTGGAACTCAACAATCGAGACAGTGGTGGCTGGTGTTCCTGTAGT 1104
Query 1044 GGCGTATCCGA-CTTGGATAGATCAGCCGCTTGATGCGAGACTGCTTGTGGATGTGTTTG 1102
|| || |||| || ||| ||||||||| || | ||| | ||||||| ||||||||||
Sbjct 1105 AGCATACCCGAGCT-GGACGGATCAGCCGATTAACGCGCGGTTGCTTGTTGATGTGTTTG 1163
Query 1103 GAATCGGAGTAAGGATGAAGAACGACGCTATCGATGGAGAGCTTAAGGTTGCAGAGGTGG 1162
|||||||||||||||||| ||| ||| || ||||||| ||||| ||||| | ||| || |
Sbjct 1164 GAATCGGAGTAAGGATGAGGAATGACACTGTCGATGGCGAGCTCAAGGTCGAAGAAGTAG 1223
Query 1163 AGAGATGCATTGAGGCCGTGACAGAGGGACCTGCCGCCGCGGATATGAGGAGGAGAGCGA 1222
| ||||||||||||||||||||||||||||| || ||||||||||| || ||||||| |
Sbjct 1224 AAAGATGCATTGAGGCCGTGACAGAGGGACCAGCTGCCGCGGATATAAGAAGGAGAGTGG 1283
Query 1223 CGGAGCTGAAGCACGCCGCAAGATCGGCGATGTCACCTGGTGGATCTTCCGCTCAGAATT 1282
| ||||||||||| | ||||||||||||| || |||||||||||||||| |||| |||||
Sbjct 1284 CAGAGCTGAAGCATGTCGCAAGATCGGCGTTGGCACCTGGTGGATCTTCGGCTCGGAATT 1343
Query 1283 TAGACTCGTTCATTAGTGATATCCCAATC 1311
|||||| |||||||||||||||| |||||
Sbjct 1344 TAGACTTGTTCATTAGTGATATCACAATC 1372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49254808764
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5