BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23260.1
Length=1513
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481198 jgi|Araly1|481198|fgenesh2_kg.4__258__AT2G23260.1 2169 0.0
Ahg932318 jgi|Araly1|932318|scaffold_400306.1 1284 0.0
> Ahg481198 jgi|Araly1|481198|fgenesh2_kg.4__258__AT2G23260.1
Length=1497
Score = 2169 bits (1174), Expect = 0.0
Identities = 1395/1501 (93%), Gaps = 17/1501 (1%)
Strand=Plus/Plus
Query 17 aaaaaTAATGGGCAGTAGTGAGGGTCAAGAAACACATGTCCTAATGGTAACACTACCATT 76
||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1 AAAAAGAATGGGCAGTAGTGAGGGTCAAGAAACACATGTCCTAATGGTTACACTAGCATT 60
Query 77 CCAAGGTCACATCAATCCAATGCTCAAACTCGCAAAACATCTCTCGTTATCATCAAAGAA 136
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 CCAAGGTCACATCAATCCAATGCTCAAACTCGCCAAACATCTCTCGTTATCATCAAAGAA 120
Query 137 CCTACACATCAATCTCGCCACTATTGAGTCAGCCCGTGATCTCCTCTCCACCGTAGAAAA 196
||||||| ||| |||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 121 CCTACACGTCACTCTCGCCACTGTTGAACCAGCCCGTGATCTCCTCTCCACCGTAGAAAA 180
Query 197 ACCTCGTTA-TCCGGTGGACCTCGTGTTCTTCTCCGATGGTCTACCTAAAGAAGATCCAA 255
| |||| || ||||||||||||||||||||||||||| ||||| |||||||| ||||| |
Sbjct 181 ATCTCG-TAGTCCGGTGGACCTCGTGTTCTTCTCCGACGGTCTGCCTAAAGACGATCC-A 238
Query 256 AG-GCCCCTGAAACTCTTTTGAAGTCATTGAATAAAGTCGGAGCCATGAACTTGTCTAAA 314
|| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 239 AGAGCCCCTGAAACTCTTTTGAAGTCATTGAATAAAGTAGGAGCCAAGAACTTGTCTAAA 298
Query 315 ATCATCGAAGAAAAGAGATACTCTTGTATCATCTCTTCGCCTTTTACTCCATGGGTTCCA 374
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 299 ATCATCGAAGAAAAGATATACTCTTGTGTCATCTCTTCGCCTTTTACTCCATGGGTTCCA 358
Query 375 GCTGTTGCAGCCTCTCATAACA-TCTCTTGTGCAATACTTTGGATCCAAGCTTGTGGAGC 433
|||||||||||| ||||||||| || |||||||||| |||||||| ||||||||||||||
Sbjct 359 GCTGTTGCAGCCGCTCATAACATTC-CTTGTGCAATCCTTTGGATTCAAGCTTGTGGAGC 417
Query 434 TTACTCGGTTTATTACCGTTACTACATGAAGACAAACTCTTTCCCTGATCTTGAAGATCT 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TTACTCGGTTTATTACCGTTACTACATGAAGACAAACTCTTTCCCTGATCTTGAAGATCT 477
Query 494 GAATCAAACGGTGGAGTTACCAGCTTTACCATTGTTGGAAGTTCGAGATCTTCCATCGTT 553
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 478 GAATCAAACAGTGGAGTTACCAGCATTACCATTGTTGGAAGTTCGAGATCTTCCATCGTT 537
Query 554 TATGTTACCTTCTGGTGGTGCTCACTTCTATAATCTAATGGCGGAATTTGCAGATTGTTT 613
||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||
Sbjct 538 TATGTTACCTTCTGGTGGTTCTCACTTCAATAATCTAATGGCGGAATTTGCTGATTGTTT 597
Query 614 GAGGTATGTGAAATGGGTTTTGGTTAATTCATTCTATGAACTCGAATCAGAGATAATCGA 673
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 598 GAGGTATGTGAAATGGGTTTTGGTTAATTCGTTCTATGAACTCGAATCAGAGATAATAGA 657
Query 674 ATCGATGGCTGATTTAAAACCTGTAATTCCAATTGGTCCTCTGGTTTCTCCATTTCTGTT 733
||| ||||||||||||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 658 ATCAATGGCTGATTTAAAACCTGTAATCCCGATTGGTCCTCTTGTTTCTCCATTTCTGTT 717
Query 734 GGGCGATGGTGAGGAGGAAACCCTAGACGGTAAAAACCTAGATTTTTGTAAATCTGATGA 793
||| | || |||||| ||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 718 GGGAGCTGATGAGGATGAAACCCTAGATGGTAAAAACCTAGATTTGTGCAAATCTGATGA 777
Query 794 TTGTTGTATGGAGTGGCTTGACAAGCAAGCTAGGTCTTCTGTTGTGTACATATCTTTCGG 853
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 778 TTGTTGTATGGAGTGGCTTGACAAGCAAGCTAGGTCTTCGGTTGTGTACATTTCTTTCGG 837
Query 854 AAGTATGCTCGAAACATTGGAGAATCAGGTCGAGACCATAGCGAAGGCGCTGAAGAACAG 913
||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AAGCATGCTCGAATCATTGGAGAATCAGGTCGAGACCATAGCGAAGGCGCTGAAGAACAA 897
Query 914 AGGACTTCCATTTCTTTGGGTGATAAGGCCAAAGGAGAAAGCCCAAAACGTTGCTGTTTT 973
|| | |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 898 AGAAGTTCCATTTCTCTGGGTGATAAGGCCAAAGGAGAAAGCCCAAAACGTTGATGTTTT 957
Query 974 GCAGGAGATGGTGAAAGAAGGACAAGGGGTTGTTCTCGAGTGGAGTCCACAAGAGAAGAT 1033
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 958 GCAGGAGATGGTAAAAGAAGGACAAGGAGTTGTTCTCGAGTGGAGTCCACAAGAGAGGAT 1017
Query 1034 TTTGAGCCACGAGGCAATCTCTTGTTTTGTCACGCATTGCGGCTGGAACTCGACTATGGA 1093
||||||||||| ||| ||||||||||| ||||||| |||||||||||||| || || ||
Sbjct 1018 TTTGAGCCACGTGGCGATCTCTTGTTTCATCACGCACTGCGGCTGGAACTCAACAATCGA 1077
Query 1094 GACGGTGGTGGCTGGTGTTCCTGTGGTAGCGTACCCTAGCTGGACGGATCAGCCCATTGA 1153
||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||| |
Sbjct 1078 GACAGTGGTGGCTGGTGTTCCTGTAGTAGCATACCCGAGCTGGACGGATCAGCCGATTAA 1137
Query 1154 CGCGCGGTTGCTTGTTGATGTGTTTGGAATCGGAGTAAGGATGAGGAATGACAGTGTCGA 1213
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1138 CGCGCGGTTGCTTGTTGATGTGTTTGGAATCGGAGTAAGGATGAGGAATGACACTGTCGA 1197
Query 1214 TGGCGAGCTTAAGGTCGAAGAAGTAGAAAGATGCATTGAGGCCGTGACGGAGGGACCCGC 1273
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1198 TGGCGAGCTCAAGGTCGAAGAAGTAGAAAGATGCATTGAGGCCGTGACAGAGGGACCAGC 1257
Query 1274 TGCCGTGGATATAAGAAGGAGAGCGGCGGAGCTAAAGCGCGTGGCGAGATTGGCGTTGGC 1333
||||| ||||||||||||||||| ||| ||||| |||| || || |||| |||||||||
Sbjct 1258 TGCCGCGGATATAAGAAGGAGAGTGGCAGAGCTGAAGCATGTCGCAAGATCGGCGTTGGC 1317
Query 1334 ACCTGGTGGATCTTCGACACGGAATTTAGACTTGTTCATTAGTGATATCACAATCGCCTA 1393
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 ACCTGGTGGATCTTCGGCTCGGAATTTAGACTTGTTCATTAGTGATATCACAATCGCCTA 1377
Query 1394 ACTCTTTACTTC--AA-C--T-AGTACAAAATGTATGAATACAAGGTTTGATA-TAACC- 1445
||||| ||||| || | | ||||||||||||||||||||||||||||| | | ||
Sbjct 1378 ACTCTGTACTTTGGAATCAATTAGTACAAAATGTATGAATACAAGGTTTGAGACTTCCCG 1437
Query 1446 -ACTATCAATTGTTAGAAAA-CCAAACTGATGAATGGACTCTGGACCAATTGTTTTTTAT 1503
| |||||||||||| |||| ||||||||||||||||| | ||||||| |||||| ||||
Sbjct 1438 GA-TATCAATTGTTACAAAAACCAAACTGATGAATGGAATATGGACCAGTTGTTTGTTAT 1496
Query 1504 T 1504
|
Sbjct 1497 T 1497
> Ahg932318 jgi|Araly1|932318|scaffold_400306.1
Length=1377
Score = 1284 bits (695), Expect = 0.0
Identities = 1164/1387 (84%), Gaps = 46/1387 (3%)
Strand=Plus/Plus
Query 38 GGGTCAAGAAACACATGTCCTAATGGTAACACTACCATTCCAAGGTCACATCAATCCAAT 97
|||||||||||||||||||||||||||| || || |||||||||||||| | ||||||||
Sbjct 4 GGGTCAAGAAACACATGTCCTAATGGTAGCATTAGCATTCCAAGGTCACCTAAATCCAAT 63
Query 98 GCTCAAACTCGCAAAACATCTCTCGTTATCATC-AAAGAACCTACACATCAATCTCGCCA 156
||||||| |||| ||||| ||||| || | || ||||||||| ||| ||||||||
Sbjct 64 GCTCAAATTCGCCAAACA--TCTCG----CA-CGAACCAACCTACACTTCACTCTCGCCA 116
Query 157 CTATTGAGTC-AGCCCGTGATCT-C-CTC-TCCACCGTAGAAAAACCTCGTTA-TCCGGT 211
| | |||| | ||||||||| || | ||| ||||| | || |||| | || |||||
Sbjct 117 CCACTGAG-CAAGCCCGTGACCTCCTCTCTTCCACTGCCGACGAACC-CCATAGACCGGT 174
Query 212 GGACCTCGTGTTCTTCTCCGATGGTCTACCTAAAGAAGATCCAA-AGGCCCCTGAAACTC 270
|||||||| |||||| |||| ||||| |||||||| ||||||| || |||| || ||||
Sbjct 175 GGACCTCGCCTTCTTCCCCGACGGTCTGCCTAAAGACGATCCAAGAGACCCC-GACACTC 233
Query 271 TTTTGAAGTCATTGA-ATAAAGTCGGAGCCATGAACTTGTCTAAAATCATCGAAGAAAAG 329
| |||||||||| | ||||| ||||||| ||||||||| ||||||||||||||||||
Sbjct 234 TCGCAAAGTCATTGAGA-AAAGTTGGAGCCAAGAACTTGTCAAAAATCATCGAAGAAAAG 292
Query 330 AGATACTCTTGTATCATCTCT-TCGCCTTTTACTCCATGGGTTCCAGCTGTTGCAGCCTC 388
|||| | ||| || ||||| | ||||||||| |||||||||||||||||||| || |
Sbjct 293 AGATTCGATTGCATTGTCTCTGT-GCCTTTTACCCCATGGGTTCCAGCTGTTGCCGCGGC 351
Query 389 TCATAACA-TCTCTTGTGCAATACTTTGGATCCAAGCTTGTGGAGCTTACTCGGTTTATT 447
|||||| | || |||||||||| || |||||||||||||||||||||| ||| |||||||
Sbjct 352 TCATAATATTC-CTTGTGCAATCCTCTGGATCCAAGCTTGTGGAGCTTTCTCCGTTTATT 410
Query 448 ACCGTTACTACATGAAGACAAACT-CTTTCCCTGATCTTGAAGATCTGAATCAAACGGTG 506
|||||||||||||||||||||| | ||||||| || ||||||| |||||||||||| |||
Sbjct 411 ACCGTTACTACATGAAGACAAA-TCCTTTCCCCGACCTTGAAGTTCTGAATCAAACAGTG 469
Query 507 GAGTTACCAGCTTTACCATTGTTGGAAGTTCGAGATCTTCCATCGTTTATGTTACCTTCT 566
|||||||||||||||||| |||||||||| |||||||| ||||| || ||||||||||||
Sbjct 470 GAGTTACCAGCTTTACCACTGTTGGAAGTCCGAGATCTCCCATCATTGATGTTACCTTCT 529
Query 567 GGTGGTGCTCACTTCTATAATCTAATGGCGGAATTTGCAGATTGTTTG-AGGTATGTGAA 625
||| ||||| || ||| |||||||||||||| |||||||| ||| | | ||||| |
Sbjct 530 CATGGCGCTCAGGTCAATACGCTAATGGCGGAATTCGCAGATTGCTTGAAAG-ATGTGCA 588
Query 626 ATGGGTTTTGGTTAATTCATTCTATGAACTCGAATCAGAGATAATCGAATCGATGGCTGA 685
||||||||||||||| || || || ||||||||||||||||||||||| || ||| ||||
Sbjct 589 ATGGGTTTTGGTTAACTCGTTTTACGAACTCGAATCAGAGATAATCGAGTCTATGTCTGA 648
Query 686 TTTAAAACCTGTAATTCCAATTGGTCCTCTGGTTTCTCCATTTCTGTTGGGCGA-TGGTG 744
|||||||||| |||| |||||||||||||| |||||||||||||||||||| | || |
Sbjct 649 TTTAAAACCTATAATCCCAATTGGTCCTCTTGTTTCTCCATTTCTGTTGGG-AATTGAAG 707
Query 745 AGGAGGAAACCCTAGACGGTAAAAACCTAGATTTTTGTAAATCTGATGATTGTTGTATGG 804
| || |||||| ||| || |||||||||||| | || |||| |||||||| ||||||||
Sbjct 708 AAGACAAAACCCAAGATGGAAAAAACCTAGATATGTGGAAATATGATGATTTTTGTATGG 767
Query 805 AGTGGCTTGACAAGCAAGCTAGGTCTTCTGTTGTGTACATATCTTTCGGAAGTATGCTCG 864
|||||||||||||||||||||||||||| ||||| ||||||||||||||||| || |||
Sbjct 768 AGTGGCTTGACAAGCAAGCTAGGTCTTCAGTTGTTTACATATCTTTCGGAAGCATACTC- 826
Query 865 AAA-CATTGGAGAATCAGGTCGAGACCATAGCGAAGGCGCTGAAGAACAGAGGACTTCCA 923
||| ||| ||||||||| ||||||| |||||| ||||| |||| ||||||||| || ||
Sbjct 827 AAATCATCGGAGAATCAAGTCGAGATCATAGCAAAGGCATTGAAAAACAGAGGAGTTTCA 886
Query 924 TTTCTTTGGGTGATAAGGCCAAAGGAGAAAGCCCAAAACGTTGCT-GTTTTGCAGGAGAT 982
|||||||||||||| ||||| |||||||||| | |||| || | |||||||| |||||
Sbjct 887 TTTCTTTGGGTGATTAGGCCGAAGGAGAAAGGCGAAAATGTC-CAAGTTTTGCAAGAGAT 945
Query 983 GGTGAAAGAAGG-ACAAGGGGTTGTTCTCGAGTGGAGTCCACAAGAGAAGATTTTGAGCC 1041
||| |||||||| | |||||||||| | || ||| ||| |||||||||||| |||||||
Sbjct 946 GGTTAAAGAAGGTA-AAGGGGTTGTAATTGAATGGGGTCAACAAGAGAAGATATTGAGCC 1004
Query 1042 ACGA-GGCAATCTCTTGTTTTGTCACGCATTGCGGCTGGAACTCGACTATGGAGACGGTG 1100
|| | ||| |||||||| || |||| |||||| || ||||||||||| || |||||||||
Sbjct 1005 AC-ATGGCGATCTCTTGCTTCGTCATGCATTGTGGATGGAACTCGACGATCGAGACGGTG 1063
Query 1101 GTGGCTGGTGTTCCTGTGGTAGCGTACCCTAGCT-GGACGGATCAGCC-CATTGACGCGC 1158
||| |||||||||| ||||| ||||| || | || ||| |||||||| | |||| || |
Sbjct 1064 GTGACTGGTGTTCCGGTGGTGGCGTATCCGA-CTTGGATAGATCAGCCGC-TTGATGC-C 1120
Query 1159 GG-TTGCTTGTTGATGTGTTTGGAATCGGAGTAAGGATGAGGAATGACAG-TGTCGATGG 1216
| |||||||| |||||||||||||| ||||||||||||| ||| || | ||| || ||
Sbjct 1121 AGATTGCTTGTGGATGTGTTTGGAATAGGAGTAAGGATGAAGAACGAT-GCTGTTGACGG 1179
Query 1217 CGAGCTTAAGGTCGAAGAAGTAGAAAGATGCATTGAGGCCGTGACGGAGGGACCCGCTGC 1276
||||||||||| ||||| || || |||||||||||||||||||| || ||||| || ||
Sbjct 1180 AGAGCTTAAGGTTGAAGAGGTGGAGAGATGCATTGAGGCCGTGACAGAAGGACCTGCCGC 1239
Query 1277 CGTGGATATAAGAAGGAGAGCGGCGGAGCTAAAGCGCGTGGCGAGATTGGCGTTGGCACC 1336
|| || || || ||||||||| ||||||| |||| || || |||| |||| |||||||
Sbjct 1240 CGCGGGCATGAGGAGGAGAGCGACGGAGCTGAAGCACGCCGCAAGATCGGCGATGGCACC 1299
Query 1337 TGGTGGATCTTCGACACGGAATTTAGACTTGTTCATTAGTGATATCACAATCGCCTAACT 1396
||||||||||||| | ||||||||||||| |||||||||||||||||||||| ||| |||
Sbjct 1300 TGGTGGATCTTCGGCTCGGAATTTAGACTCGTTCATTAGTGATATCACAATCACCTGACT 1359
Query 1397 C-TTTAC 1402
| |||||
Sbjct 1360 CGTTTAC 1366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56640194315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5