BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G23260.1 Length=1513 Score E Sequences producing significant alignments: (Bits) Value Ahg481198 jgi|Araly1|481198|fgenesh2_kg.4__258__AT2G23260.1 2169 0.0 Ahg932318 jgi|Araly1|932318|scaffold_400306.1 1284 0.0 > Ahg481198 jgi|Araly1|481198|fgenesh2_kg.4__258__AT2G23260.1 Length=1497 Score = 2169 bits (1174), Expect = 0.0 Identities = 1395/1501 (93%), Gaps = 17/1501 (1%) Strand=Plus/Plus Query 17 aaaaaTAATGGGCAGTAGTGAGGGTCAAGAAACACATGTCCTAATGGTAACACTACCATT 76 ||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct 1 AAAAAGAATGGGCAGTAGTGAGGGTCAAGAAACACATGTCCTAATGGTTACACTAGCATT 60 Query 77 CCAAGGTCACATCAATCCAATGCTCAAACTCGCAAAACATCTCTCGTTATCATCAAAGAA 136 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 61 CCAAGGTCACATCAATCCAATGCTCAAACTCGCCAAACATCTCTCGTTATCATCAAAGAA 120 Query 137 CCTACACATCAATCTCGCCACTATTGAGTCAGCCCGTGATCTCCTCTCCACCGTAGAAAA 196 ||||||| ||| |||||||||| |||| ||||||||||||||||||||||||||||||| Sbjct 121 CCTACACGTCACTCTCGCCACTGTTGAACCAGCCCGTGATCTCCTCTCCACCGTAGAAAA 180 Query 197 ACCTCGTTA-TCCGGTGGACCTCGTGTTCTTCTCCGATGGTCTACCTAAAGAAGATCCAA 255 | |||| || ||||||||||||||||||||||||||| ||||| |||||||| ||||| | Sbjct 181 ATCTCG-TAGTCCGGTGGACCTCGTGTTCTTCTCCGACGGTCTGCCTAAAGACGATCC-A 238 Query 256 AG-GCCCCTGAAACTCTTTTGAAGTCATTGAATAAAGTCGGAGCCATGAACTTGTCTAAA 314 || ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct 239 AGAGCCCCTGAAACTCTTTTGAAGTCATTGAATAAAGTAGGAGCCAAGAACTTGTCTAAA 298 Query 315 ATCATCGAAGAAAAGAGATACTCTTGTATCATCTCTTCGCCTTTTACTCCATGGGTTCCA 374 |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 299 ATCATCGAAGAAAAGATATACTCTTGTGTCATCTCTTCGCCTTTTACTCCATGGGTTCCA 358 Query 375 GCTGTTGCAGCCTCTCATAACA-TCTCTTGTGCAATACTTTGGATCCAAGCTTGTGGAGC 433 |||||||||||| ||||||||| || |||||||||| |||||||| |||||||||||||| Sbjct 359 GCTGTTGCAGCCGCTCATAACATTC-CTTGTGCAATCCTTTGGATTCAAGCTTGTGGAGC 417 Query 434 TTACTCGGTTTATTACCGTTACTACATGAAGACAAACTCTTTCCCTGATCTTGAAGATCT 493 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 TTACTCGGTTTATTACCGTTACTACATGAAGACAAACTCTTTCCCTGATCTTGAAGATCT 477 Query 494 GAATCAAACGGTGGAGTTACCAGCTTTACCATTGTTGGAAGTTCGAGATCTTCCATCGTT 553 ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 478 GAATCAAACAGTGGAGTTACCAGCATTACCATTGTTGGAAGTTCGAGATCTTCCATCGTT 537 Query 554 TATGTTACCTTCTGGTGGTGCTCACTTCTATAATCTAATGGCGGAATTTGCAGATTGTTT 613 ||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||| Sbjct 538 TATGTTACCTTCTGGTGGTTCTCACTTCAATAATCTAATGGCGGAATTTGCTGATTGTTT 597 Query 614 GAGGTATGTGAAATGGGTTTTGGTTAATTCATTCTATGAACTCGAATCAGAGATAATCGA 673 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 598 GAGGTATGTGAAATGGGTTTTGGTTAATTCGTTCTATGAACTCGAATCAGAGATAATAGA 657 Query 674 ATCGATGGCTGATTTAAAACCTGTAATTCCAATTGGTCCTCTGGTTTCTCCATTTCTGTT 733 ||| ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| Sbjct 658 ATCAATGGCTGATTTAAAACCTGTAATCCCGATTGGTCCTCTTGTTTCTCCATTTCTGTT 717 Query 734 GGGCGATGGTGAGGAGGAAACCCTAGACGGTAAAAACCTAGATTTTTGTAAATCTGATGA 793 ||| | || |||||| ||||||||||| ||||||||||||||||| || ||||||||||| Sbjct 718 GGGAGCTGATGAGGATGAAACCCTAGATGGTAAAAACCTAGATTTGTGCAAATCTGATGA 777 Query 794 TTGTTGTATGGAGTGGCTTGACAAGCAAGCTAGGTCTTCTGTTGTGTACATATCTTTCGG 853 ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 778 TTGTTGTATGGAGTGGCTTGACAAGCAAGCTAGGTCTTCGGTTGTGTACATTTCTTTCGG 837 Query 854 AAGTATGCTCGAAACATTGGAGAATCAGGTCGAGACCATAGCGAAGGCGCTGAAGAACAG 913 ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 838 AAGCATGCTCGAATCATTGGAGAATCAGGTCGAGACCATAGCGAAGGCGCTGAAGAACAA 897 Query 914 AGGACTTCCATTTCTTTGGGTGATAAGGCCAAAGGAGAAAGCCCAAAACGTTGCTGTTTT 973 || | |||||||||| ||||||||||||||||||||||||||||||||||||| |||||| Sbjct 898 AGAAGTTCCATTTCTCTGGGTGATAAGGCCAAAGGAGAAAGCCCAAAACGTTGATGTTTT 957 Query 974 GCAGGAGATGGTGAAAGAAGGACAAGGGGTTGTTCTCGAGTGGAGTCCACAAGAGAAGAT 1033 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 958 GCAGGAGATGGTAAAAGAAGGACAAGGAGTTGTTCTCGAGTGGAGTCCACAAGAGAGGAT 1017 Query 1034 TTTGAGCCACGAGGCAATCTCTTGTTTTGTCACGCATTGCGGCTGGAACTCGACTATGGA 1093 ||||||||||| ||| ||||||||||| ||||||| |||||||||||||| || || || Sbjct 1018 TTTGAGCCACGTGGCGATCTCTTGTTTCATCACGCACTGCGGCTGGAACTCAACAATCGA 1077 Query 1094 GACGGTGGTGGCTGGTGTTCCTGTGGTAGCGTACCCTAGCTGGACGGATCAGCCCATTGA 1153 ||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||| | Sbjct 1078 GACAGTGGTGGCTGGTGTTCCTGTAGTAGCATACCCGAGCTGGACGGATCAGCCGATTAA 1137 Query 1154 CGCGCGGTTGCTTGTTGATGTGTTTGGAATCGGAGTAAGGATGAGGAATGACAGTGTCGA 1213 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1138 CGCGCGGTTGCTTGTTGATGTGTTTGGAATCGGAGTAAGGATGAGGAATGACACTGTCGA 1197 Query 1214 TGGCGAGCTTAAGGTCGAAGAAGTAGAAAGATGCATTGAGGCCGTGACGGAGGGACCCGC 1273 ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 1198 TGGCGAGCTCAAGGTCGAAGAAGTAGAAAGATGCATTGAGGCCGTGACAGAGGGACCAGC 1257 Query 1274 TGCCGTGGATATAAGAAGGAGAGCGGCGGAGCTAAAGCGCGTGGCGAGATTGGCGTTGGC 1333 ||||| ||||||||||||||||| ||| ||||| |||| || || |||| ||||||||| Sbjct 1258 TGCCGCGGATATAAGAAGGAGAGTGGCAGAGCTGAAGCATGTCGCAAGATCGGCGTTGGC 1317 Query 1334 ACCTGGTGGATCTTCGACACGGAATTTAGACTTGTTCATTAGTGATATCACAATCGCCTA 1393 |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 1318 ACCTGGTGGATCTTCGGCTCGGAATTTAGACTTGTTCATTAGTGATATCACAATCGCCTA 1377 Query 1394 ACTCTTTACTTC--AA-C--T-AGTACAAAATGTATGAATACAAGGTTTGATA-TAACC- 1445 ||||| ||||| || | | ||||||||||||||||||||||||||||| | | || Sbjct 1378 ACTCTGTACTTTGGAATCAATTAGTACAAAATGTATGAATACAAGGTTTGAGACTTCCCG 1437 Query 1446 -ACTATCAATTGTTAGAAAA-CCAAACTGATGAATGGACTCTGGACCAATTGTTTTTTAT 1503 | |||||||||||| |||| ||||||||||||||||| | ||||||| |||||| |||| Sbjct 1438 GA-TATCAATTGTTACAAAAACCAAACTGATGAATGGAATATGGACCAGTTGTTTGTTAT 1496 Query 1504 T 1504 | Sbjct 1497 T 1497 > Ahg932318 jgi|Araly1|932318|scaffold_400306.1 Length=1377 Score = 1284 bits (695), Expect = 0.0 Identities = 1164/1387 (84%), Gaps = 46/1387 (3%) Strand=Plus/Plus Query 38 GGGTCAAGAAACACATGTCCTAATGGTAACACTACCATTCCAAGGTCACATCAATCCAAT 97 |||||||||||||||||||||||||||| || || |||||||||||||| | |||||||| Sbjct 4 GGGTCAAGAAACACATGTCCTAATGGTAGCATTAGCATTCCAAGGTCACCTAAATCCAAT 63 Query 98 GCTCAAACTCGCAAAACATCTCTCGTTATCATC-AAAGAACCTACACATCAATCTCGCCA 156 ||||||| |||| ||||| ||||| || | || ||||||||| ||| |||||||| Sbjct 64 GCTCAAATTCGCCAAACA--TCTCG----CA-CGAACCAACCTACACTTCACTCTCGCCA 116 Query 157 CTATTGAGTC-AGCCCGTGATCT-C-CTC-TCCACCGTAGAAAAACCTCGTTA-TCCGGT 211 | | |||| | ||||||||| || | ||| ||||| | || |||| | || ||||| Sbjct 117 CCACTGAG-CAAGCCCGTGACCTCCTCTCTTCCACTGCCGACGAACC-CCATAGACCGGT 174 Query 212 GGACCTCGTGTTCTTCTCCGATGGTCTACCTAAAGAAGATCCAA-AGGCCCCTGAAACTC 270 |||||||| |||||| |||| ||||| |||||||| ||||||| || |||| || |||| Sbjct 175 GGACCTCGCCTTCTTCCCCGACGGTCTGCCTAAAGACGATCCAAGAGACCCC-GACACTC 233 Query 271 TTTTGAAGTCATTGA-ATAAAGTCGGAGCCATGAACTTGTCTAAAATCATCGAAGAAAAG 329 | |||||||||| | ||||| ||||||| ||||||||| |||||||||||||||||| Sbjct 234 TCGCAAAGTCATTGAGA-AAAGTTGGAGCCAAGAACTTGTCAAAAATCATCGAAGAAAAG 292 Query 330 AGATACTCTTGTATCATCTCT-TCGCCTTTTACTCCATGGGTTCCAGCTGTTGCAGCCTC 388 |||| | ||| || ||||| | ||||||||| |||||||||||||||||||| || | Sbjct 293 AGATTCGATTGCATTGTCTCTGT-GCCTTTTACCCCATGGGTTCCAGCTGTTGCCGCGGC 351 Query 389 TCATAACA-TCTCTTGTGCAATACTTTGGATCCAAGCTTGTGGAGCTTACTCGGTTTATT 447 |||||| | || |||||||||| || |||||||||||||||||||||| ||| ||||||| Sbjct 352 TCATAATATTC-CTTGTGCAATCCTCTGGATCCAAGCTTGTGGAGCTTTCTCCGTTTATT 410 Query 448 ACCGTTACTACATGAAGACAAACT-CTTTCCCTGATCTTGAAGATCTGAATCAAACGGTG 506 |||||||||||||||||||||| | ||||||| || ||||||| |||||||||||| ||| Sbjct 411 ACCGTTACTACATGAAGACAAA-TCCTTTCCCCGACCTTGAAGTTCTGAATCAAACAGTG 469 Query 507 GAGTTACCAGCTTTACCATTGTTGGAAGTTCGAGATCTTCCATCGTTTATGTTACCTTCT 566 |||||||||||||||||| |||||||||| |||||||| ||||| || |||||||||||| Sbjct 470 GAGTTACCAGCTTTACCACTGTTGGAAGTCCGAGATCTCCCATCATTGATGTTACCTTCT 529 Query 567 GGTGGTGCTCACTTCTATAATCTAATGGCGGAATTTGCAGATTGTTTG-AGGTATGTGAA 625 ||| ||||| || ||| |||||||||||||| |||||||| ||| | | ||||| | Sbjct 530 CATGGCGCTCAGGTCAATACGCTAATGGCGGAATTCGCAGATTGCTTGAAAG-ATGTGCA 588 Query 626 ATGGGTTTTGGTTAATTCATTCTATGAACTCGAATCAGAGATAATCGAATCGATGGCTGA 685 ||||||||||||||| || || || ||||||||||||||||||||||| || ||| |||| Sbjct 589 ATGGGTTTTGGTTAACTCGTTTTACGAACTCGAATCAGAGATAATCGAGTCTATGTCTGA 648 Query 686 TTTAAAACCTGTAATTCCAATTGGTCCTCTGGTTTCTCCATTTCTGTTGGGCGA-TGGTG 744 |||||||||| |||| |||||||||||||| |||||||||||||||||||| | || | Sbjct 649 TTTAAAACCTATAATCCCAATTGGTCCTCTTGTTTCTCCATTTCTGTTGGG-AATTGAAG 707 Query 745 AGGAGGAAACCCTAGACGGTAAAAACCTAGATTTTTGTAAATCTGATGATTGTTGTATGG 804 | || |||||| ||| || |||||||||||| | || |||| |||||||| |||||||| Sbjct 708 AAGACAAAACCCAAGATGGAAAAAACCTAGATATGTGGAAATATGATGATTTTTGTATGG 767 Query 805 AGTGGCTTGACAAGCAAGCTAGGTCTTCTGTTGTGTACATATCTTTCGGAAGTATGCTCG 864 |||||||||||||||||||||||||||| ||||| ||||||||||||||||| || ||| Sbjct 768 AGTGGCTTGACAAGCAAGCTAGGTCTTCAGTTGTTTACATATCTTTCGGAAGCATACTC- 826 Query 865 AAA-CATTGGAGAATCAGGTCGAGACCATAGCGAAGGCGCTGAAGAACAGAGGACTTCCA 923 ||| ||| ||||||||| ||||||| |||||| ||||| |||| ||||||||| || || Sbjct 827 AAATCATCGGAGAATCAAGTCGAGATCATAGCAAAGGCATTGAAAAACAGAGGAGTTTCA 886 Query 924 TTTCTTTGGGTGATAAGGCCAAAGGAGAAAGCCCAAAACGTTGCT-GTTTTGCAGGAGAT 982 |||||||||||||| ||||| |||||||||| | |||| || | |||||||| ||||| Sbjct 887 TTTCTTTGGGTGATTAGGCCGAAGGAGAAAGGCGAAAATGTC-CAAGTTTTGCAAGAGAT 945 Query 983 GGTGAAAGAAGG-ACAAGGGGTTGTTCTCGAGTGGAGTCCACAAGAGAAGATTTTGAGCC 1041 ||| |||||||| | |||||||||| | || ||| ||| |||||||||||| ||||||| Sbjct 946 GGTTAAAGAAGGTA-AAGGGGTTGTAATTGAATGGGGTCAACAAGAGAAGATATTGAGCC 1004 Query 1042 ACGA-GGCAATCTCTTGTTTTGTCACGCATTGCGGCTGGAACTCGACTATGGAGACGGTG 1100 || | ||| |||||||| || |||| |||||| || ||||||||||| || ||||||||| Sbjct 1005 AC-ATGGCGATCTCTTGCTTCGTCATGCATTGTGGATGGAACTCGACGATCGAGACGGTG 1063 Query 1101 GTGGCTGGTGTTCCTGTGGTAGCGTACCCTAGCT-GGACGGATCAGCC-CATTGACGCGC 1158 ||| |||||||||| ||||| ||||| || | || ||| |||||||| | |||| || | Sbjct 1064 GTGACTGGTGTTCCGGTGGTGGCGTATCCGA-CTTGGATAGATCAGCCGC-TTGATGC-C 1120 Query 1159 GG-TTGCTTGTTGATGTGTTTGGAATCGGAGTAAGGATGAGGAATGACAG-TGTCGATGG 1216 | |||||||| |||||||||||||| ||||||||||||| ||| || | ||| || || Sbjct 1121 AGATTGCTTGTGGATGTGTTTGGAATAGGAGTAAGGATGAAGAACGAT-GCTGTTGACGG 1179 Query 1217 CGAGCTTAAGGTCGAAGAAGTAGAAAGATGCATTGAGGCCGTGACGGAGGGACCCGCTGC 1276 ||||||||||| ||||| || || |||||||||||||||||||| || ||||| || || Sbjct 1180 AGAGCTTAAGGTTGAAGAGGTGGAGAGATGCATTGAGGCCGTGACAGAAGGACCTGCCGC 1239 Query 1277 CGTGGATATAAGAAGGAGAGCGGCGGAGCTAAAGCGCGTGGCGAGATTGGCGTTGGCACC 1336 || || || || ||||||||| ||||||| |||| || || |||| |||| ||||||| Sbjct 1240 CGCGGGCATGAGGAGGAGAGCGACGGAGCTGAAGCACGCCGCAAGATCGGCGATGGCACC 1299 Query 1337 TGGTGGATCTTCGACACGGAATTTAGACTTGTTCATTAGTGATATCACAATCGCCTAACT 1396 ||||||||||||| | ||||||||||||| |||||||||||||||||||||| ||| ||| Sbjct 1300 TGGTGGATCTTCGGCTCGGAATTTAGACTCGTTCATTAGTGATATCACAATCACCTGACT 1359 Query 1397 C-TTTAC 1402 | ||||| Sbjct 1360 CGTTTAC 1366 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56640194315 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5