BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G23270.1

Length=631
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg932320 jgi|Araly1|932320|scaffold_400308.1                        403    7e-112


> Ahg932320 jgi|Araly1|932320|scaffold_400308.1
Length=301

 Score =  403 bits (218),  Expect = 7e-112
 Identities = 276/304 (91%), Gaps = 4/304 (1%)
 Strand=Plus/Plus

Query  76   caaaaataccactcaaagaaaatGATGATGAACAAAGTTGTTTTGGGTTCGTTTCTGTTT  135
            |||||| | |||||||||||||||||||||||||||||||| ||||||||  ||||||||
Sbjct  1    CAAAAA-AGCACTCAAAGAAAATGATGATGAACAAAGTTGTATTGGGTTCAATTCTGTTT  59

Query  136  TTCATGTTGGTGAGTTCGAATT-TTGTGGTGGAGGCTCGTCCTTTGGGTTTAACGAAGGC  194
            ||||||||||| |||||| ||| |||||  |||||||||||| |||||||||||||||||
Sbjct  60   TTCATGTTGGTTAGTTCG-ATTCTTGTGACGGAGGCTCGTCCGTTGGGTTTAACGAAGGC  118

Query  195  TGAAGAGAACCTCGTGGCTAAGTTCTTCGATGGTTTGTCACTTGGGGCGATTAAGGAGTC  254
            ||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  119  TGAAGAGGAGCTCGTGGCTAAGTTCTTCGATGGTTTGTCACTTGGGGCGATCAAGGAGTC  178

Query  255  GGGTCCTAGCTCTGGTGGTGAGGGTCATCGGTTCGTGGACCGGACTGAGACGCTTGAATA  314
            ||||||||||||||||||||||||||||| ||||||||| || | ||||||||||| |||
Sbjct  179  GGGTCCTAGCTCTGGTGGTGAGGGTCATCAGTTCGTGGATCGAAGTGAGACGCTTGGATA  238

Query  315  TGGTAAGCATTCAGGTCCCAGCACGAGTGGACCCGGTCACTAAGTTCCCGACCGAACCAG  374
            | ||||||| || ||||||||| |||| ||||||||||||||| |||  ||||| |||||
Sbjct  239  TCGTAAGCAATCCGGTCCCAGCCCGAGCGGACCCGGTCACTAATTTCG-GACCGGACCAG  297

Query  375  TTAA  378
            ||||
Sbjct  298  TTAA  301



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23102487702


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5