BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G23270.1 Length=631 Score E Sequences producing significant alignments: (Bits) Value Ahg932320 jgi|Araly1|932320|scaffold_400308.1 403 7e-112 > Ahg932320 jgi|Araly1|932320|scaffold_400308.1 Length=301 Score = 403 bits (218), Expect = 7e-112 Identities = 276/304 (91%), Gaps = 4/304 (1%) Strand=Plus/Plus Query 76 caaaaataccactcaaagaaaatGATGATGAACAAAGTTGTTTTGGGTTCGTTTCTGTTT 135 |||||| | |||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 1 CAAAAA-AGCACTCAAAGAAAATGATGATGAACAAAGTTGTATTGGGTTCAATTCTGTTT 59 Query 136 TTCATGTTGGTGAGTTCGAATT-TTGTGGTGGAGGCTCGTCCTTTGGGTTTAACGAAGGC 194 ||||||||||| |||||| ||| ||||| |||||||||||| ||||||||||||||||| Sbjct 60 TTCATGTTGGTTAGTTCG-ATTCTTGTGACGGAGGCTCGTCCGTTGGGTTTAACGAAGGC 118 Query 195 TGAAGAGAACCTCGTGGCTAAGTTCTTCGATGGTTTGTCACTTGGGGCGATTAAGGAGTC 254 ||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 119 TGAAGAGGAGCTCGTGGCTAAGTTCTTCGATGGTTTGTCACTTGGGGCGATCAAGGAGTC 178 Query 255 GGGTCCTAGCTCTGGTGGTGAGGGTCATCGGTTCGTGGACCGGACTGAGACGCTTGAATA 314 ||||||||||||||||||||||||||||| ||||||||| || | ||||||||||| ||| Sbjct 179 GGGTCCTAGCTCTGGTGGTGAGGGTCATCAGTTCGTGGATCGAAGTGAGACGCTTGGATA 238 Query 315 TGGTAAGCATTCAGGTCCCAGCACGAGTGGACCCGGTCACTAAGTTCCCGACCGAACCAG 374 | ||||||| || ||||||||| |||| ||||||||||||||| ||| ||||| ||||| Sbjct 239 TCGTAAGCAATCCGGTCCCAGCCCGAGCGGACCCGGTCACTAATTTCG-GACCGGACCAG 297 Query 375 TTAA 378 |||| Sbjct 298 TTAA 301 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23102487702 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5