BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23290.1
Length=1134
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481200 jgi|Araly1|481200|fgenesh2_kg.4__260__AT2G23290.1 1498 0.0
> Ahg481200 jgi|Araly1|481200|fgenesh2_kg.4__260__AT2G23290.1
Length=1096
Score = 1498 bits (811), Expect = 0.0
Identities = 1028/1125 (91%), Gaps = 46/1125 (4%)
Strand=Plus/Plus
Query 27 AAATCCCCAAACAATAGAAACGCGTTTTAAACGATTTGATTAGTTTTAAATTAAAAAGAA 86
|||||| ||||||| ||||||||||||||||||||||||||| || || | ||
Sbjct 1 AAATCCACAAACAAAAGAAACGCGTTTTAAACGATTTGATTA---TT---TT----A-AA 49
Query 87 GATCCGAGCGATGTCTGGTTCGACCCGGAAAGAAATGGATCGGATCAAAGGACCATGGAG 146
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 50 -AT-----CGATGCCTGGTTCGACCCGGAAAGAAATGGATCGGATCAAAGGACCATGGAG 103
Query 147 TCCTGAAGAAGACGATCTGTTACAATCGTTGGTTCAGAAGCACGGACCAAGGAACTGGTC 206
||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||
Sbjct 104 TCCTGAAGAAGACGATCTGTTACAAACGCTGGTTCAAAAGCACGGACCAAGGAACTGGTC 163
Query 207 TCTGATAAGCAAATCAATCCCTGGACGTTCCGGTAAATCTTGCCGTCTCCGTTGGTGTAA 266
|||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 164 TCTGATAAGCAAATCAATCCCTGGGCGTTCCGGTAAATCTTGTCGTCTCCGGTGGTGTAA 223
Query 267 TCAGCTTTCTCCGGAGGTAGAGCACCGTGGATTCACGGCGGAGGAAGATGATACGATTAT 326
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 224 TCAGCTGTCTCCGGAGGTAGAGCACCGTGGATTCACGGCGGAGGAAGACGATACAATTAT 283
Query 327 ACTAGCGCACGCTCGGTTTGGTAACAAGTGGGCGACGATTGCACGGCTTCTCAATGGTCG 386
|||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 284 ACTAGCCCACGCTCGGTTCGGTAACAAGTGGGCTACGATTGCACGGCTTCTCAATGGTCG 343
Query 387 CACTGATAACGCGATTAAGAATCACTGGAACTCAACGCTGAAGCGGAAATGTAGCGGCGG 446
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 344 CACCGATAACGCGATTAAGAATCATTGGAACTCAACGCTGAAGCGGAAATGTAGCGGCGG 403
Query 447 AGGCGG---CGGAGGAGAGGAAGGGCAGAGTTGTGATTTCGGTGGTAATGGAGGGTATGA 503
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 CGGCGGTGGCGGTGGAGAGGAAGGGCAGAGTTGTGATTTCGGTGGTAATGGAGGGTATGA 463
Query 504 TGGTAATTTAACTGATGAAAAACCGTTAAAACGGAGGGCGAGTGGTGGAGGAGGAGTTGT 563
|||||||||||| |||||||| ||||||||||||| ||| ||||| ||||| |||| ||
Sbjct 464 TGGTAATTTAACAGATGAAAAGCCGTTAAAACGGACGGCTAGTGGAGGAGGTGGAGGAGT 523
Query 564 TGTGGTGACGGCGTTAAGTCCAACGGGATCTGACGTCAGCGAGCAATCGCAATCTAGTGG 623
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 TGTGTTGACGGCGTTAAGTCCAACGGGATCTGACGTCAGCGAGCAATCGCAATCTAGTGG 583
Query 624 ATCTGTTTTACCGGTTTCTTCTTCTTGTCATGTTTTTAAACCGACGGCGAGAGCTGGTGG 683
|| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 584 ATTTGTTTTGCCGGTTTCTTCTTCTTCACATGTTTTTAAACCGACGGCGAGAGCTGGTGG 643
Query 684 AGTGGTGATTGAGTCATCATCGCCGGAGGAGGAGGAGAAAGATCCGATGACTTGTTTGAG 743
|||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||
Sbjct 644 AGTGGTGATTGAGTCATCGTCG--G-AGGAGGAGGAGAAAGATCCGATGACTTGTTTGAG 700
Query 744 GTTGTCTTTGCCTTGGGTCAATGAGTCAACAACTCCACCGGAGTTGTTTCCGGTgaagag 803
|||||||||||||||||||| |||||||| ||| |||||||||||||||||||||
Sbjct 701 TTTGTCTTTGCCTTGGGTCAACGAGTCAAC---TCCGGTGGAGTTGTTTCCGGTGAAGAG 757
Query 804 agaagaagaagaagagaaggaaagagagaTTTCTGGACTTGGTGGAGATTTTATGACGGT 863
|||||||||||| || | ||||||||||||||||||| |||||| |||||||||||||||
Sbjct 758 AGAAGAAGAAGA-GA-A-GGAAAGAGAGATTTCTGGATTTGGTGAAGATTTTATGACGGT 814
Query 864 GGTGCAGGAGATGATTAAGACGGAGGTTAGGAGTTACATGGCGGATTTACAGCTAGGAAA 923
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||
Sbjct 815 GGTGCAGGAGATGATTAAGACGGAGGTTAGGAGTTATATGGCGGATTTACAGCGAGGGAA 874
Query 924 CGGCGGAGGAGCTGG------AGGAGGAGCAAGTTCGTGTATGGTGCAAGGAACTAATGG 977
|||||||||| |||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct 875 CGGCGGAGGAACTGGCGGCGGAGGAGGAGGAAGTTTGTGTATGGTGCAAGGAACTAATGG 934
Query 978 TCGTAATGTAGGGTTTAGAGAGTTTATTGGATTAGGTAGGATCGAGTAGTGAGT--GAGA 1035
||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||
Sbjct 935 TCGTAATGTAGGGTTTAGAGAGTTTATTGGAATAGGTAAGATCGAGTAGTGAGAAAGAGA 994
Query 1036 AAA-GAG-AA-GAATTGTGTAGCAAATGCAGAGAAAGAG--CCAATTTCATGATTTGAGA 1090
||| | | || |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 995 AAATGCGCAAAGAATTGTGTAGCAAATGCAGAGAAAGAGAGCCAATTTCATGATTTGAGA 1054
Query 1091 TTTGA-TTCATTCGaaaaaaaaaCTGAATAAATGTATTGATTTTG 1134
|| || |||||||||| |||| ||||||||||||||||||||||
Sbjct 1055 TT-GAATTCATTCGAATAAAA--CTGAATAAATGTATTGATTTTG 1096
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42278314953
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5