BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23300.1
Length=2322
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343889 jgi|Araly1|343889|fgenesh1_pg.C_scaffold_4000231 3489 0.0
Ahg944134 jgi|Araly1|944134|scaffold_700363.1 1229 0.0
> Ahg343889 jgi|Araly1|343889|fgenesh1_pg.C_scaffold_4000231
Length=2310
Score = 3489 bits (1889), Expect = 0.0
Identities = 2159/2289 (94%), Gaps = 20/2289 (1%)
Strand=Plus/Plus
Query 50 tcttcttcttcttctcttctctgtttcttctctcctctgctttaaactctgatggagttc 109
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 26 TCTTCTTCTTCTTCTCTTCTCTGTTTCTTGTTTCCTCTGCTTTAAACTCTGATGGAGTTC 85
Query 110 tcttACTGAGTTTCAAATACTCTGTTCTTCTTGATCCTCTCTCTTTATTACAATCATGGA 169
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 86 TCTTAATGAGTTTCAAATACTCTGTTCTTCTTGATCCTCTCTCTTTATTACAGTCATGGA 145
Query 170 ACTACGACCACGACAATCCTTGTTCATGGCGAGGTGTGTTGTGTAATAACGATTCAAGAG 229
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 146 ACTACGACCACGACAATCCTTGTTCTTGGCGAGGTGTGTTATGTAATAACGATTCAAGAG 205
Query 230 TTGTTACTTTATCTCTCCCAAACTCTAACCTCGTTGGTTCGATTCCTTCCGATCTGGGTT 289
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 TTGTTACTTTATCTCTACCAAACTCTAACCTCGTTGGTTCGATTCCTTCCGATCTGGGTT 265
Query 290 TCCTCCAAAACCTCCAAAGTCTTAATCTTTCCAATAATTCACTCAATGGGTCATTACCGG 349
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 266 TCCTCCAAAACCTTCAAAGTCTTAATCTTTCCAACAATTCACTCAATGGGTCATTACCGG 325
Query 350 TTGAGTTTTTCGCCGCCGATAAGCTCCGGTTTCTTGATTTATCAAATAACTTGATCTCCG 409
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 326 TTGAGTTTTTCGCCGCCGATAAGCTCCGGTTTCTTGATTTATCAAACAACTTGATCTCCG 385
Query 410 GCGAGATCCCTGTATCAATCGGAGGTTTACACAACCTCCAGACGTTAAATCTCTCCGATA 469
||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 386 GCGAGATCCCTGTGTCAATCGGAGATTTGCACAACCTCCAGACGTTAAATCTCTCCGATA 445
Query 470 ACATCTTCACCGGGAAACTACCAGCTAACTTAGCGTCTCTTGGAAGCTTAACG-GAGGTT 528
||||||| ||||| ||| ||||| | || |||||||||||||||||||||| | ||||||
Sbjct 446 ACATCTTTACCGGAAAATTACCAACCAATTTAGCGTCTCTTGGAAGCTTAA-GAGAGGTT 504
Query 529 TCTCTGAAGAACAACTACTTCTCCGGCGAGTTTCCCGGCGGCGGATGGAGATCGGTTCAG 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 TCTCTGAAGAACAACTACTTCTCCGGCGAGTTTCCCGGCGGCGGATGGAGATCGGTTCAG 564
Query 589 TATCTAGACATTTCTTCAAATCTAATCAACGGTTCACTCCCACCTGATTTCTCCGGCGAC 648
| ||| |||||||| || ||||||||||| || ||||||||||||||||||||| ||||
Sbjct 565 TTTCTTGACATTTCCTCGAATCTAATCAATGGATCACTCCCACCTGATTTCTCCAGCGAT 624
Query 649 AATCTCCGATACCTGAATGTCTCGTATAACCAAATCTCCGGAGAGATTCCTCCGAATGTT 708
|||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 625 AATCTCCGGTACCTGAATGTCTCGTATAACCAAATCTCCGGCGAGATCCCTCCGAATGTC 684
Query 709 GGTGCCGGTTTTCCTCAAAACGCCACCGTTGATTTCTCCTTCAACAATTTAACCGGTTCA 768
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 685 GGTGCCGGTTTTCCTCAAAACGCTACCGTTGATTTCTCCTTCAACAATTTAACCGGTTCA 744
Query 769 ATCCCAGATTCTCCGGTTTACCTTAACCAGAAATCAATTTCGTTTTCCGGAAACCCGGGT 828
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 745 ATCCCAGATTCTCCGGTTTTCCTTAACCAGAAATCAATTTCGTTTTCCGGAAACCCGGGT 804
Query 829 TTATGCGGAGGTCCGACCCGAAACCCGTGTCCCATTCCTTCATCTCCGGCCACCG--T-- 884
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| |
Sbjct 805 TTATGCGGTGGTCCGACCCGAAACCCGTGTCCCATTCCTTCCTCTCCAGCCACCGTCTCC 864
Query 885 -----C-TCG--CCACCAACCTCTACACCTGCACTCGCAGCTATACCTAAATCAATCGGG 936
| ||| ||||| || ||||| |||||||| ||||| ||||| ||||||||||||
Sbjct 865 GGCGCCGTCGCTCCACCTACGTCTACGCCTGCACTAGCAGCCATACCAAAATCAATCGGG 924
Query 937 TCTAA-TCGAGAAACCGAACCGAACAACAACTCAAATCCTCGAACCGGGTTAAGACCAGG 995
|| || || ||||||||||||| |||||||||||||||||||||| || |||||||||||
Sbjct 925 TCAAATTC-AGAAACCGAACCGGACAACAACTCAAATCCTCGAACAGGATTAAGACCAGG 983
Query 996 AGTTATAATCGGAATCATAGTCGGAGATATCGCCGGAATCGGAATCCTCGCTCTTATCTT 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 AGTTATAATCGGAATCATAGTCGGAGATATCGCCGGAATCGGAATCCTCGCTCTTATCTT 1043
Query 1056 CTTCTACGTTTATAAATACAAAAACAACAAGACAGTGGAGAAGAAGAACAATCATAGCCT 1115
| |||||||||| |||||||| || ||||| || ||||||||||||||| |||| || ||
Sbjct 1044 CCTCTACGTTTACAAATACAAGAAGAACAAAACCGTGGAGAAGAAGAACGATCAAAGTCT 1103
Query 1116 AGAAGCTCATGAAGCTAAAGACACAACTTCGTTATCACCATCATCATCAACAACTACATC 1175
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 AGAAGCTCACGAAGCTAAAGACACAACTTCGTTATCACCATCATCATCAACAACTACATC 1163
Query 1176 TTCTTCATCTCCAGAACAATCAAGCAGATTTGCAAAATGGTCATGTCTCCGTAAGAATCA 1235
||||||||| |||||||||||||| ||||| | |||||||||||||||||||||||||||
Sbjct 1164 TTCTTCATCACCAGAACAATCAAGTAGATTCGGAAAATGGTCATGTCTCCGTAAGAATCA 1223
Query 1236 AGAAACCGATGAAACCGAAGAAGAAGACGAAGAAAATCAACGGTCAGGAGAGATTGGAGA 1295
|||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||
Sbjct 1224 AGAAACCGATGAAACCGAAGAAGAAGACGACGAAAATCAACGATCAGGAGAGTTTGGAGA 1283
Query 1296 GAATAAGAAAGGGACTTTAGTAACCATTGATGGAGGAGAGAAAGAGCTTGAAGTTGAAAC 1355
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1284 GAACAAGAAAGGGACTTTAGTAACCATTGATGGAGGAGAGAAAGAACTTGAAGTTGAAAC 1343
Query 1356 TTTGCTTAAGGCTTCTGCTTACATTTTAGGAGCCACTGGTTCGAGTATAATGTACAAGAC 1415
||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1344 TTTGCTTAAAGCTTCTGCTTACATTTTGGGAGCCACCGGTTCGAGTATAATGTACAAGAC 1403
Query 1416 TGTTCTTGAGGACGGTACGGTTCTCGCGGTTCGTCGGTTAGGTGAGAATGGTTTGAGTCA 1475
||||||||||| || |||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 1404 GGTTCTTGAGGATGGGACGGTTCTTGCGGTTCGTCGGTTAGGTGAGAACGGTTTAAGTCA 1463
Query 1476 ACAACGCCGGTTTAAAGACTTTGAGGCACATATTCGAGCTATTGGTAAATTGGTTCACCC 1535
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1464 ACAACGCCGGTTTAAGGACTTTGAGGCACATATTCGAGCTATTGGTAAACTGGTTCACCC 1523
Query 1536 GAATTTGGTACGTCTTCGTGGATTCTATTGGGGCACCGACGAGAAATTGGTCATTTACGA 1595
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1524 GAATTTGGTTCGTCTCCGTGGATTCTATTGGGGCACCGACGAGAAATTGGTCATTTACGA 1583
Query 1596 TTTTGTTCCTAACGGCAGTCTCGTCAACGCCCGTTACAGGAAAGGAGGGTCTTCGCCGTG 1655
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1584 TTTTGTCCCTAACGGCAGTCTCGTCAACGCCCGTTACAGGAAAGGAGGGTCGTCGCCGTG 1643
Query 1656 CCATTTACCGTGGGAGACTCGGCTCAAGATAGTAAAAGGTTTGGCTCGTGGGCTTGCTTA 1715
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1644 CCATTTACCATGGGAGACTCGGCTCAAGATAGCGAAAGGTTTGGCTCGTGGGCTTGCTTA 1703
Query 1716 CCTCCACGACAAGAAACATGTGCACGGTAACTTGAAGCCTAGTAACATACTCTTGGGCCA 1775
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1704 CCTCCACGACAAGAAACATGTGCACGGTAACTTGAAACCTAGTAACATACTTTTGGGCCA 1763
Query 1776 AGATATGGAGCCCAAGATCGGAGATTTCGGGCTCGAAAGGCTTCTCGCCGGGGATACTAG 1835
||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||
Sbjct 1764 AGATATGGAGCCCAAGATCGGCGATTTTGGGCTCGAAAGGCTTCTCGCCGGAGATACAAG 1823
Query 1836 CTATAACCGAGCTAGTGGATCATCTCGGATTTTCAGTAGCAAGCGATTGACAGCATCCTC 1895
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1824 CTATAACCGAGCTAGTGGATCATCTCGGATTTTCAGTAGCAAGAGATTGACAGCGTCCTC 1883
Query 1896 GCGTGAATTTGGTACC-ATCGGGCCCACACCGAGCCCAAGTCCAAGCTCCGTTGGGCCCA 1954
|||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1884 GCGTGAATTTGG-ATCGATCGGGCCCACACCGAGCCCAAGTCCAAGCTCCGTTGGGCCTA 1942
Query 1955 TATCTCCCTATTGCGCACCCGAGTCGCTCCGCAATCTCAAACCAAACCCGAAATGGGATG 2014
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1943 TATCTCCATATTGCGCACCCGAGTCGCTCCGCAATCTCAAACCAAACCCAAAATGGGATG 2002
Query 2015 TGTTTGGGTTTGGAGTGATCCTCCTCGAGCTGCTCACGGGAAAAATAGTGTCGATAGACG 2074
||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct 2003 TGTTTGGGTTTGGAGTGATCCTCCTTGAGCTGCTCACAGGAAAAATTGTGTCGATAGACG 2062
Query 2075 AGGTGGGGGTAGGAAATGGGCTGACCGTAGAGGACGGGAACCGGGCGCTAATAATGGCTG 2134
|||| ||||||||||||||| |||| ||||| ||||||||||||||||| ||||||||||
Sbjct 2063 AGGTCGGGGTAGGAAATGGGTTGACGGTAGAAGACGGGAACCGGGCGCTGATAATGGCTG 2122
Query 2135 ATGTAGCGATCCGCTCCGAATTGGAAGGCAAAGAGGACTTTTTACTTGGCCTTTTCAAAT 2194
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2123 ATGTAGCGATTCGCTCTGAATTGGAAGGCAAAGAGGACTTTTTACTTGGCCTTTTCAAGT 2182
Query 2195 TGGGATATAGTTGTGCATCTCAAATTCCACAAAAGAGACCGACCATGAAAGAGGCGTTAG 2254
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 2183 TGGGATATAGTTGTGCATCTCAAGTTCCACAAAAGAGACCGACCATGAAAGAGGCATTAG 2242
Query 2255 TAGTGTTTGAAAGATATCC-TATTAGCTCATCGGCTAAGAGTCCATCGTACCATTACGGA 2313
||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 2243 TAGTGTTTGAAAGAT-TCCCTATTAGCTCATCGGCTAAGTCTCCATCGTACCATTACGGA 2301
Query 2314 CACTATTAA 2322
|||||||||
Sbjct 2302 CACTATTAA 2310
> Ahg944134 jgi|Araly1|944134|scaffold_700363.1
Length=2342
Score = 1229 bits (665), Expect = 0.0
Identities = 1825/2359 (77%), Gaps = 184/2359 (8%)
Strand=Plus/Plus
Query 52 ttcttcttcttctctt-ctctgtttct-tctctcctctgctttaaactctgatggagtt- 108
||||||||||||| || |||||||| | | ||||||| |||||||||||||||| ||
Sbjct 48 TTCTTCTTCTTCTTTTGCTCTGTTT-TGAGT-TCCTCTGGTTTAAACTCTGATGGA-TTG 104
Query 109 ctctt-ACTG-AGTTTCAAATACTCTGTTCTTCTTGATCCTCTCTCTTTATTACA-ATCA 165
| || | || || ||||||| |||||||||| |||||||||| ||||||||||| | ||
Sbjct 105 GTTTTGA-TGAAG-TTCAAATCCTCTGTTCTTGTTGATCCTCTGTCTTTATTACAGA-CA 161
Query 166 TGGAACTACGACCACGACAA-TCCTTGTTCA-TGGCGAGGTGTGT-TGTGTAATAACGAT 222
||||||||| | ||||| || ||| |||| | ||| |||| | | | ||||||||||||
Sbjct 162 TGGAACTACAAACACGA-AACTCCATGTT-ATTGGAGAGGAATCTCT-TGTAATAACGAT 218
Query 223 TC-AAGAGTTGTT-ACTTTATCTC-TCCCAAACTCT-AACCTCGTTGGTTCGATTCCTTC 278
|| || || | || || || |||| |||| || ||| ||| || ||||||||||||||||
Sbjct 219 TCTAA-AG-TCTTAACCTTGTCTCTTCCC-AATTCTCAACTTC-TTGGTTCGATTCCTTC 274
Query 279 CGATCTGGGTTTCCTC-CAAAAC-CTCCAAAGTCTTAATCTTTCCAATAATTCAC-TCAA 335
||| |||| || ||| | ||| || ||||||| |||||||||| ||||| | ||||
Sbjct 275 TGATTTGGG-TT-CTCTCTTAACACTTAAAAGTCTCGATCTTTCCAACAATTC-CTTCAA 331
Query 336 TGGGTCATTACCGGTTGAGTTT-TTCGCCGCCGATA-AGCTCCGGTTT-CTTGATTTATC 392
|||| ||||||||||| ||| ||| || | | | |||| | |||| || ||| | ||
Sbjct 332 TGGGCCATTACCGGTT-TCTTTCTTCAACG-CTAGAGAGCTTC-GTTTCCTCGATCTCTC 388
Query 393 AAATAACTTGATCTCCGGCGAGATCCCTGT-ATCAATCGGAGGT-TTACACAA-CCTCCA 449
| |||| ||||||||||||| |||||| | |||| || | | || ||||| | || |
Sbjct 389 TAGTAACATGATCTCCGGCGAAATCCCT-TCCGCAATTGGTGATCTT-CACAATCTTCTA 446
Query 450 GACGTTAAATCTCTCCGATAACATCTTCACCGGGAAA-CTACCAGCTAACTTAGCGTCTC 508
|| |||||||||| ||||| ||| ||||||| |||| || || || |||||
Sbjct 447 -ACCCTAAATCTCTCTGATAATGCCTT-GGCGGGAAAGTTACCTGCAAATTTGGCGTC-A 503
Query 509 TTG-GAAGCTTAACGGAGGTTTCTCTGAAGAACAACTACTTCTCCGGCGAGTTTCCCGGC 567
||| ||| | |||||| ||||||| || |||| || ||||| |||||||| || || |
Sbjct 504 TTGAGAAACCTAACGGTGGTTTCTTTGGAGAATAATTACTTTTCCGGCGAAATT-CC--C 560
Query 568 GGCGGATGGAGA-TCGGTTCAGTATC-TAGACATTTCTTCAAATCTAATCAACGGTTCAC 625
||||| |||||| | ||| ||| || ||||| | || || ||||| ||||| || || |
Sbjct 561 GGCGGTTGGAGAGT-TGTTGAGT-TCTTAGACCTATCGTCGAATCTGATCAATGGCTCGC 618
Query 626 TCCCACCTGATTTCT-CCGGCGACAATCTCCGATACCTGAATGTCTCGTATAACCAAATC 684
| ||||||||||| | ||| || | |||||| ||| |||| ||||||| ||| ||||||
Sbjct 619 TACCACCTGATTT-TGGCGGAGATAGTCTCCGGTACTTGAACGTCTCGTTTAATCAAATC 677
Query 685 TCCGGAGAGATTCCTCCGAATG-TTGGTGCCGGTTTTCCTCA-AAACGCCACCGTTGATT 742
||||| || ||||| ||| | | |||| | | ||||| || ||||| ||||||||||
Sbjct 678 TCCGGCGAAATTCCACCGGA-GATTGGAGTC-AATTTCCCCAGAAACGTCACCGTTGATC 735
Query 743 TCTCCTTCAACAATTTAACCGGTTCAATCCCAGATTCTCCGGTTTACCTTAACCAGAAAT 802
||||||||||||||||||||||| |||| |||||||||||||||| | |||||||| |||
Sbjct 736 TCTCCTTCAACAATTTAACCGGTCCAATACCAGATTCTCCGGTTTTCTTTAACCAGGAAT 795
Query 803 C-AATTTCGTTTTCCGGAAACCCGGGTTTATGCGGAGGTCCGACCCGAAACCCGTGTCCC 861
| |||||| ||||| |||||||||||| ||||||| | || ||||| ||||||||||
Sbjct 796 CGAATTTC-TTTTCAGGAAACCCGGGTCTATGCGGTGAACCAACCCGTAACCCGTGTCTT 854
Query 862 ATTCCTTCATCTCCGGCCA-C-CGT-C-TCGCC-A----CCAACCTCTACACCTGCACTC 912
|| ||||| || ||| | | | | | | |||| | || || |||||||| ||| ||
Sbjct 855 ATCCCTTCCTCGCCGTCAATCGCCTCCAACGCCGACGTGCCGACGTCTACACCAGCAATC 914
Query 913 GCAGCTATACCTAA-ATCAATCGGGTCTAA-TCGAGAAACCGAACC--GA--ACAAC--A 964
|| || ||||| || | ||||||| || || || | ||||| || | ||||| |
Sbjct 915 GCCGCCATACCGAACA-CAATCGGTTCAAACCCG-GTTACCGATCCAAAATCACAACAAA 972
Query 965 ---ACTCAAAT-CCTCGAACCGGGTTAAGACCAGGAGTTATAATCGGAATCATAGTCGGA 1020
|| ||||| || |||||||||||| |||| |||||||||||||||||| ||||||||
Sbjct 973 CCGACCCAAATGCC-CGAACCGGGTTACGACCCGGAGTTATAATCGGAATCGTAGTCGGA 1031
Query 1021 GATATCGCCGGAATCGGAATCCTCGCTC-TTATCTTCTTCTACGTTTATAAATACAAAAA 1079
|||||||||||||||||||||||||| | | || ||| ||||| | || | || ||| ||
Sbjct 1032 GATATCGCCGGAATCGGAATCCTCGC-CGTAATTTTCCTCTACATCTACAGATGCAAGAA 1090
Query 1080 CAACAAGACAGTGGAGAAGAAGAACAATCATAGCCTAGAAGCTCATGAAGCTAAAGACAC 1139
||||||| ||||| || || ||| | || || | | ||| || ||| | |||||
Sbjct 1091 GAACAAGATTGTGGATAATAACAACGA-CA-AG-C-A-AAGAACA-GAA---ACGGACAC 1141
Query 1140 AACTT-CGTTATCACCATCATCATCAACAACTACATCTTCTTCATCTCCAGAACAATCAA 1198
|| || || ||||||||| | | ||| | |||||||| || |||||| ||||||
Sbjct 1142 AA-TTACGCTATCACCAT--T--T-----ACTTCTTCTTCTTCTTCACCAGAAGAATCAA 1191
Query 1199 GCAGATTTGC-A-AAATGGTCATGTCTCCGTAAGA-ATCAAGAAACCGATG-AAACCGAA 1254
| ||| || | | |||||||| ||||| || || | ||| |||| ||| | | |||
Sbjct 1192 GAAGA-TT-CAAGAAATGGTCGTGTCTACG-AAAAGATCCTGAAA-CGACGCCGTCTGAA 1247
Query 1255 GAAG--AA-GACGAAGA-AAATCAA-CGG-T-C-A-GGAGA-GATTGG--A-GAGAATAA 1301
|||| || || ||||| || || ||| | | | | | | | || | ||| ||||
Sbjct 1248 GAAGATAATGATGAAGACGAAGAAAGCGGTTACAATGCAAATCAACGGTCAGGAG-ATAA 1306
Query 1302 GAAAGGGACTTTAGTAACCATTGATGGAGGAGAGAAAGAGCTTGAAG-TTGAAACTTTGC 1360
|| | ||||| ||| ||||| |||||||||||| || || |||| ||| |||
Sbjct 1307 -CAA--G---TTAGTGACCGTTGAT---GGAGAGAAAGAG-ATGGAGATTGAGACTCTGC 1356
Query 1361 TTAAGGCTTCTGCTTACATTTTAGGAGCCACTGGTTCGAGTATAATGTACAA-GACTGTT 1419
|||||||||| ||||| |||||||||||||||||||||||||||||||| || | | |||
Sbjct 1357 TTAAGGCTTCAGCTTATATTTTAGGAGCCACTGGTTCGAGTATAATGTATAAAGCC-GTT 1415
Query 1420 CTTGAGGACGGTACGGTTCTCGCGGTTCGTCGGTTAGGTGAGAATGGTTTGAGTCAACAA 1479
||||| ||||| | |||| |||||||||||||| | |||||||| ||||||| ||| |
Sbjct 1416 CTTGAAGACGGAAGGGTTTTCGCGGTTCGTCGGCTCGGTGAGAACGGTTTGAATCAGC-- 1473
Query 1480 CGCCGGTTTAAAGACTTTGAGGCACATATTCGAGCTATTGGTAAATTGGTTCACCCGAAT 1539
|||||||||| || |||||| | || |||||||| ||||| ||||||||||||||||||
Sbjct 1474 -GCCGGTTTAAGGATTTTGAGTCGCACATTCGAGCCATTGGCAAATTGGTTCACCCGAAT 1532
Query 1540 TTGGT-ACGTCTTCGTGGATTCTATTGGGGCACCGACGAGAAATTGGTCATTTACGATTT 1598
||||| | | ||| |||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1533 TTGGTTA-GACTTTGTGGGTTCTATTGGGGTACCGACGAGAAATTGGTCATTTACGATTT 1591
Query 1599 TGTTCCTAACGGCAGTCTCGTCAACGCCCGTTACAGGAAAGGAGG-G--TCTTCG-C-C- 1652
||| ||||||||||| ||||||||| |||||||| | |||||||| | ||||| | |
Sbjct 1592 TGTCCCTAACGGCAGCCTCGTCAACCCCCGTTACCGAAAAGGAGGAGGGTCTTCTTCACC 1651
Query 1653 GTGCCATTTACCGTGGGAGACTCGGCTCAAGATAGTAAAAGGT-TTGGCTCGTGGGCTTG 1711
|| || |||| ||||| |||||||||||||||| ||| || ||| | |||||||| |
Sbjct 1652 GTATCACCTACCATGGGAAACTCGGCTCAAGATAGCAAAGGGCATTG-CACGTGGGCTGG 1710
Query 1712 CTTACCTCCACGACAAGAAACATGTGCACGGTAACTTGAAGCCTAGTAACATACTCTTGG 1771
|||| |||||||| ||||| |||||||| || ||||||||||||||||||||||| ||||
Sbjct 1711 CTTATCTCCACGAGAAGAAGCATGTGCATGGAAACTTGAAGCCTAGTAACATACTTTTGG 1770
Query 1772 GCCAAGATATGGAGCCCAAGATCGGAGATTTCGGGCTCGAAAGGCTTCTCGCCGGGGATA 1831
|||| || ||||||||||| || || |||||||| ||||| ||||||||| | || || |
Sbjct 1771 GCCATGACATGGAGCCCAAAATAGGCGATTTCGGACTCGAGAGGCTTCTCACAGGCGAAA 1830
Query 1832 CTAGCTATAACCGAGCTAGTGGATCATCTCGGATTTTCAGTAGCAAGCGATTG-ACAGCA 1890
| ||||| | ||||||| ||||||| ||||||||||| ||||| ||||| || ||| |
Sbjct 1831 CGAGCTACATCCGAGCTGGTGGATCTTCTCGGATTTTTAGTAGTAAGCG-TTACACAACT 1889
Query 1891 TCCTCGCGTGAATT-TGGTACCATCGGGCCCACACCGAGCCCAAGTCCAAGCTCCGTTGG 1949
|| ||||| ||||| | || | || ||||| ||||| ||||| ||||| ||||| || ||
Sbjct 1890 TCATCGCGAGAATTCTCGT-CTATGGGGCCTACACCAAGCCCGAGTCCGAGCTCGGTGGG 1948
Query 1950 GCCCATATCTCCCTATTGCGCACCCGAGTCGCTCCGCAATCTCAAACCAAACCCGAAATG 2009
||| || || ||||| |||||||| ||||| |||| | || ||||| | ||||||||
Sbjct 1949 GCCGATGTCACCCTACTGCGCACCAGAGTCTTTCCGGAGCCTAAAACCGAGTCCGAAATG 2008
Query 2010 GGATGTGTTTGGG-TTTGGAGTGATCCTCCTCGAGCTGCTCACGGGAAAAATAGTGTC-G 2067
||| || || || ||||| |||||||| |||||||| ||||||||||| || ||||| |
Sbjct 2009 GGACGT-TTACGGCTTTGGCGTGATCCTTCTCGAGCTTCTCACGGGAAAGATTGTGTCTG 2067
Query 2068 ATAGACGAGGTGGGGGTAGGAAATGGGCTGACCGTAGAGGACGGGAACCGGGC-GCTAAT 2126
| || ||| | | | |||||||||| ||||| || |||||| || |||| || | | |
Sbjct 2068 TT-GAAGAGATTGTGCTAGGAAATGGACTGACGGTTGAGGACAGGCACCGCGCAG-TGAG 2125
Query 2127 AATGGCTGATGT-AGCGATCCGCTCCGAATTGGAAGGCAAAGAGGACTTTTTACTTGGCC 2185
||||| ||||| | | |||||| ||| || || |||||| | || |||||||| |
Sbjct 2126 AATGGTTGATGCGA-CTATCCGCGGCGAGTTAGATGGCAAACAAGAGTTTTTACTCGAA- 2183
Query 2186 T-TTTCAAATT-GGGATATAGTTGTGCATCTCAAATTCCACAAAAGAGACCGACCATGAA 2243
| |||||| || ||| ||||| |||||||||| | || |||||||| || || |||||
Sbjct 2184 TGTTTCAAGTTAGGG-TATAGCTGTGCATCTCCTGTGCCTCAAAAGAGGCCAACGATGAA 2242
Query 2244 AGAGGCGTTAG-TAGTGT-TTGAAAGATATCCTAT--TAGCTCATCGGCTAAGA-GTC-- 2296
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Sbjct 2243 AGAATCTTTGGCT-GT-TCTTGAAAGAT-TCC-ATCCTAACTCCTCTGTTATTAAGTCTT 2298
Query 2297 CATCGTACCATTACGGACA 2315
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Sbjct 2299 CATCGTTCCATTACGGACA 2317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87455202520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5