BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23320.1
Length=1237
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343891 jgi|Araly1|343891|fgenesh1_pg.C_scaffold_4000233 1404 0.0
> Ahg343891 jgi|Araly1|343891|fgenesh1_pg.C_scaffold_4000233
Length=945
Score = 1404 bits (760), Expect = 0.0
Identities = 898/961 (93%), Gaps = 23/961 (2%)
Strand=Plus/Plus
Query 66 ATGGCGGTGGAGCTCATGACTCGGAATTACATCTCCGGCGTCGGAGCTGATAGCTTCGCC 125
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGGCGGTGGAGCTCATGACTCGGAATTACATCTCCGGCGTCGGAACTGATAGCTTCGCC 60
Query 126 GTTCAAGAAGCAGCTGCTTCAGGACTCAAAAGTATCGAAAATTTCATCGGTTTAATGTCT 185
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 GTTCAAGAAGCAGCAGCTTCAGGACTCAAAAGTATCGAAAACTTCATCGGTTTAATGTCT 120
Query 186 CGTGATAGCTTTAACTCTGATCAGCCATCTTCTTCTTCCGCCTCCGCCTCCGCCTCCGCC 245
||||||||||||||||||||||| || ||||||||||||||||||||| || || || ||
Sbjct 121 CGTGATAGCTTTAACTCTGATCAACCCTCTTCTTCTTCCGCCTCCGCCGCCACCACCACC 180
Query 246 GCCGCAGATCTTGAATCAGCTCGTAACACAACGGCGGACGCGGCTGTTTCAAAGTTTAAA 305
| || |||||||||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 181 GTCGAAGATCTTGAATCAGCTCGTAACACGACGGCCGACGCGGCGGTTTCAAAGTTTAAA 240
Query 306 AGAGTCATATCTC-TCTTAGATCGAACTCGAACCGGACACGCCCGGTTTAGACGTGCTCC 364
||||||||||||| || ||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 241 AGAGTCATATCTCTTC-TAGATAGAACTCGAACCGGACACGCCCGGTTTAGACGCGCTCC 299
Query 365 GGTTCATGTTATTTCTCCGGTTCTT--TTA-CAAGAAGAACCAAAAACGACGCCGTTTCA 421
| ||||||||||||||| || | | ||||||||||||||| |||| ||||||||
Sbjct 300 -G-----GTTATTTCTCCGGTTATTAATAATCAAGAAGAACCAAAACCGACACCGTTTCA 353
Query 422 GTCTCCTC-T--TCCTCCTCCGCCGCAAATGATCCGAAAAGGTTCGTTTTCTTCATCGAT 478
||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 354 ATCTCCTCTTCCTCCTCCTCCGCCGCAAATGATTCGAAAAGGTTCGTTTTCTTCATCGAT 413
Query 479 GAAAACGATTGATTTCTCATCTCTCTCCTCTGTAACAACGGAATCAGACAACCAGAAGAA 538
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 414 GAAAACGATTGATTTCTCATCTCTCTCCTCTGTAACAACGGAATCAGACCACCACAAGAA 473
Query 539 GATTCATCATCATCAACGTCCCTCTGAAACGGCGCCGTTTGCGTCTCAAACTCAAAGCCT 598
| | | |||| ||||| ||||||||||||||||||| | |||||||||||||||
Sbjct 474 G----A-C-TCAT---CGTCCTTCTGAAACGGCGCCGTTTGGGAGTCAAACTCAAAGCCT 524
Query 599 CTCCACGACGGTCTCGTCTTTCTCAAAATCAACAAAGAGAAAATGTAACTCTGAGAATCT 658
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 CTCCACGACGGTTTCTTCTTTCTCAAAATCAACAAAGAGAAAATGTAACTCTGAGAATCT 584
Query 659 TCTCACCGGAAAATGCGCTTCCGCTTCTTCCTCCGGTCGTTGTCATTGCTCGAAGAAAAG 718
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 585 TCTCACCGGAAAATGCGCTTCTGCTTCTTCCTCCGGTCGTTGTCATTGCTCCAAGAAAAG 644
Query 719 AAAGATAAAACAGAGGAGAATAATTAGGGTTCCGGCGATAAGTGCAAAAATGTCCGATGT 778
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 645 AAAGATTAAACAGAGGAGAATAATTAGGGTTCCGGCGATAAGTGCTAAAATGTCCGATGT 704
Query 779 ACCACCGGACGATTATTCATGGAGGAAATACGGACAAAAACCAATTAAAGGATCTCCACA 838
||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 705 ACCTCCGGACGATTACTCATGGAGAAAATACGGACAAAAACCAATTAAAGGATCTCCACA 764
Query 839 TCCAAGAGGATATTATAAGTGTAGTAGCGTAAGAGGTTGTCCAGCACGTAAACATGTTGA 898
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 765 TCCAAGAGGATATTATAAGTGTAGTAGCGTAAGAGGTTGTCCAGCTCGTAAACATGTTGA 824
Query 899 GAGAGCAGCTGATGATTCGTCCATGTTGATTGTTACTTATGAAGGAGATCATAATCATTC 958
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 825 GAGAGCAGCTGATGATTCGTCGATGTTGATTGTTACTTATGAAGGAGATCATAATCATTC 884
Query 959 TCTCTCCGCCGCTGATCTCGCCGGAGCCGCCGTTGCTGATCTTATTTTGGAATCGTCTTG 1018
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 885 TCTCTCCGCCGCTGATCTTGCCGGAGCCGCCGTTGCTGATCTTATTTTGGAATCGTCTTG 944
Query 1019 A 1019
|
Sbjct 945 A 945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46204975404
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5