BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23340.1
Length=878
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481204 jgi|Araly1|481204|fgenesh2_kg.4__264__AT2G23340.1 584 3e-166
> Ahg481204 jgi|Araly1|481204|fgenesh2_kg.4__264__AT2G23340.1
Length=649
Score = 584 bits (316), Expect = 3e-166
Identities = 384/416 (92%), Gaps = 7/416 (2%)
Strand=Plus/Plus
Query 180 CCGGCGGTTATGGAGACGGAAGCGGCGGTGACAG-CGACGGTTACGGCGGCGACGATGGG 238
||||||||||||||||||| |||| ||||||| | |||||||||||||||||||||||||
Sbjct 1 CCGGCGGTTATGGAGACGGGAGCGACGGTGAC-GACGACGGTTACGGCGGCGACGATGGG 59
Query 239 GATTGGGACGAGGAAGAGAGATCTGAAACCGTATAAAGGAATACGAATGAGGAAATGGGG 298
||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||
Sbjct 60 GATTGGGACGAGGAAGAGAGATCTGAAACCGTACAAAGGAATAAGAATGAGAAAATGGGG 119
Query 299 GAAATGGGTGGCGGAGAT-ACGGGAACCGAATAAGAGATCAAGGATCTGGTTAGGTTCTT 357
||||||||||||||||| | | |||||||| ||||| ||||||||||||||||||||||
Sbjct 120 AAAATGGGTGGCGGAGATTA-GAGAACCGAACAAGAGGTCAAGGATCTGGTTAGGTTCTT 178
Query 358 ATGCGACGCCTGAAGCGGCGGCGAGAGCTTACGACACTGCTGTTTTTTACCTCCGTGGTC 417
|| | || ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 179 ATTCTACACCTGAAGCGGCGGCGAGAGCTTACGACACCGCTGTTTTTTACCTCCGTGGTC 238
Query 418 CTTCAGCGAGGCTTAATTTTCCGGAGCTTTTGGCTGGACTTACTGTTTCTAACGGCGGAG 477
|||| || |||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 239 CTTCTGCTCGGCTTAATTTCCCGGAGCTTTTGGCTGGACTTACGGTTTCTAACGGCGGAG 298
Query 478 GAAGAGGTGGTGATTTATCGGCGGCGTATATTAGGAGAAAAGCGGCGGAGGTTGGTGCTC 537
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 299 GAAGAGGTGGTGATTTATCGGCGGCGTATATAAGAAGAAAAGCGGCGGAGGTTGGTGCTC 358
Query 538 AGGTTGATGCGCTTGGAGCGACGGTGGTTGTGAATACCGGCGGCGAGAATCGCGGT 593
|||||||||| |||||||||||||||| ||||||| ||| | |||||| |||||
Sbjct 359 AGGTTGATGCTCTTGGAGCGACGGTGGCTGTGAATTCCG-C--CGAGAAGAGCGGT 411
Score = 359 bits (194), Expect = 2e-98
Identities = 234/252 (93%), Gaps = 8/252 (3%)
Strand=Plus/Plus
Query 621 AAGAGCGGTAACGGGTCATTGGAACGGGTCGATTTGAATAAATTACCCGACCCGGAAAAT 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 AAGAGCGGTAACGGGTCATTGGAACGGGTCGATTTGAATAAATTACCCGACCCGGAAAAT 462
Query 681 TCGGATGGTGATGATGACGAATGTGTGAAAAGAAGATAGaaaaaataaaaa-GTAGTTGT 739
||||||| |||||||||||| |||||||| || |||||||||||| ||||| ||||||||
Sbjct 463 TCGGATGATGATGATGACGAGTGTGTGAAGAGGAGATAGAAAAAAAAAAAAAGTAGTTGT 522
Query 740 AGAAGGAGAGACGAGAATGTTTGTCTTTAAGATGCGCTGTTGCCGCTAACATGCGCTTT- 798
|||| || | ||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 523 AGAATGA-A-ACGAGAATGTTTGTCTTTACGATGCGCTGTTGTCGCTAACATGCGCTTTT 580
Query 799 CGATTTTA-GTGTTAAACATGCGCCTCCATTGTTTTTGGGTTTTGTTTTCGTCGTCGATA 857
|| ||||| ||||||||||||||||||||||||||| ||||||||||| | || ||||||
Sbjct 581 CG-TTTTAAGTGTTAAACATGCGCCTCCATTGTTTT-GGGTTTTGTTT-CTTCCTCGATA 637
Query 858 ATCAAAGATTTT 869
||||||||||||
Sbjct 638 ATCAAAGATTTT 649
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32518848201
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5