BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G23348.1

Length=473
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg899647 jgi|Araly1|899647|Al_scaffold_0004_297                     261    3e-69


> Ahg899647 jgi|Araly1|899647|Al_scaffold_0004_297
Length=231

 Score =  261 bits (141),  Expect = 3e-69
 Identities = 203/232 (88%), Gaps = 8/232 (3%)
 Strand=Plus/Plus

Query  131  ACTTCTATGCTCAGGTTATACGTTCCTACTTGTGGCTTTTCGAACAATTTATGTCTCTGT  190
            ||||||||||||| || |||| ||||| ||||||||||||||||||||||||||||||||
Sbjct  3    ACTTCTATGCTCAAGTAATACTTTCCTGCTTGTGGCTTTTCGAACAATTTATGTCTCTGT  62

Query  191  TATATCATTGACTCATGAGGCTTATGAGGATATTTCAGATTATAGCTTTGTTAGATTT-T  249
            ||| ||| | ||| |||||||||||| ||||||||||||||||| ||||| | | ||| |
Sbjct  63   TATCTCACTAACTTATGAGGCTTATGCGGATATTTCAGATTATAACTTTGATGGCTTTGT  122

Query  250  CTTATAA-TATTTGGCATTGGCATTCACTTGTCCGGTTCTCATGTGATGGATATGTGATA  308
             || | | ||  || |||||||||| |||  ||||||||||||||||||||| |||||||
Sbjct  123  -TT-TCACTAGATGTCATTGGCATTTACTAATCCGGTTCTCATGTGATGGATCTGTGATA  180

Query  309  GCATGGATTGAAA-TCTTGAAGCTTTTGGTTATGGTTTTC-GTTCTAATCTA  358
            ||||||||||||| |||||||||||||| ||||||||||| || ||||||||
Sbjct  181  GCATGGATTGAAAATCTTGAAGCTTTTG-TTATGGTTTTCAGT-CTAATCTA  230



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17131859461


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5